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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TAG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.187370 (1 seq.)
>FG091800001
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
645305
645403
+
Leu
TAG
[ENA]
¡û
Identical group No.190887 (1 seq.)
>FG090800126
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
946814
946918
+
Leu
TAG
[ENA]
¡û
Identical group No.196763 (3 seq.)
>SC0800010
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
617911
618013
+
Leu
TAG
[ENA]
¡û
>SC0800012
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
592622
592520
-
Leu
TAG
[ENA]
¡û
>SC0800013
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
732091
732193
+
Leu
TAG
[ENA]
¡û
Identical group No.201382 (4 seq.)
>FU090900024
CR380949
Ascomycota
Candida glabrata CBS 138 CBS138
441493
441601
+
Leu
TAG
[ENA]
¡û
>FU090900038
CR380954
Ascomycota
Candida glabrata CBS 138 CBS138
845903
845795
-
Leu
TAG
[ENA]
¡û
>FU090900039
CR380954
Ascomycota
Candida glabrata CBS 138 CBS138
595750
595642
-
Leu
TAG
[ENA]
¡û
>FU090900043
CR380956
Ascomycota
Candida glabrata CBS 138 CBS138
154247
154355
+
Leu
TAG
[ENA]
¡û
Identical group No.205478 (1 seq.)
>FU090900220
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
1692293
1692189
-
Leu
TAG
[ENA]
¡û
Identical group No.219894 (2 seq.)
>FG090800001
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
9804
9893
+
Leu
TAG
[ENA]
¡û
>FG090800004
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
1516063
1515974
-
Leu
TAG
[ENA]
¡û
Identical group No.219896 (1 seq.)
>FG091800002
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
920209
920112
-
Leu
TAG
[ENA]
¡û
Identical group No.225500 (1 seq.)
>FG090100392
AL590450
Microsporidia
Encephalitozoon_cuniculi_GB-M1
53750
53670
-
Leu
TAG
[ENA]
¡û
Identical group No.227900 (2 seq.)
>FU090900138
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
335455
335585
+
Leu
TAG
[ENA]
¡û
>FU090900139
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
366089
366219
+
Leu
TAG
[ENA]
¡û
Identical group No.232951 (1 seq.)
>FG092910020
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
3591948
3592044
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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