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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
22 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1003885
SRR002328.7891
227519
Betaproteobacteria
TTG
Gln
>SRA1004189
SRR002328.190446
197278
Betaproteobacteria
CAT
Met
>SRA1004238
SRR002328.216529
197278
Betaproteobacteria
CAT
Met
>SRA1004304
SRR002328.258734
197278
Betaproteobacteria
CAT
Met
>SRA1004033
SRR002328.105765
198132
Betaproteobacteria
CAT
Met
>SRA1004158
SRR002328.176774
198132
Betaproteobacteria
CAT
Met
>SRA1003968
SRR002328.63250
290590
Betaproteobacteria
TAC
Val
>SRA1003969
SRR002328.65499
281431
Betaproteobacteria
GTT
Asn
>SRA1004018
SRR002328.98486
281431
Betaproteobacteria
GTT
Asn
>SRA1004019
SRR002328.98486
281431
Betaproteobacteria
GTT
Asn
>SRA1004149
SRR002328.172717
281431
Betaproteobacteria
GTT
Asn
>SRA1003959
SRR002328.58849
307931
Betaproteobacteria
TTC
Glu
>SRA1004042
SRR002328.112103
307931
Betaproteobacteria
TTC
Glu
>SRA1004213
SRR002328.203574
483989
Betaproteobacteria
>SRA1003998
SRR002328.89399
284821
Betaproteobacteria
TTT
Lys
>SRA1004137
SRR002328.167224
284821
Betaproteobacteria
TTT
Lys
>SRA1003934
SRR002328.47373
293769
Betaproteobacteria
GCC
Gly
>SRA1004240
SRR002328.217425
211214
Betaproteobacteria
CAT
Met
>SRA1004318
SRR002328.273095
211214
Betaproteobacteria
CAT
Met
>SRA1004011
SRR002328.95622
120253
Betaproteobacteria
CAG
Leu
>SRA1004202
SRR002328.195622
120253
Betaproteobacteria
CAG
Leu
>SRA1003976
SRR002328.68302
340615
Betaproteobacteria
TGC
Ala
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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