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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
12 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170233051
CEQI01205045
396582
Alphaproteobacteria
GAC
Val
>WENV170233073
CEQI01207998
370289
Alphaproteobacteria
GGT
Thr
>WENV170231931
CEQI01006731
309312
Alphaproteobacteria
TGC
Ala
>WENV170231975
CEQI01009892
265211
Alphaproteobacteria
CCA
Trp
>WENV170232014
CEQI01014118
278841
Alphaproteobacteria
TTT
Lys
>WENV170232095
CEQI01023505
278841
Alphaproteobacteria
TTT
Lys
>WENV170232639
CEQI01085874
220291
Alphaproteobacteria
CCG
Arg
>WENV170232511
CEQI01067962
371034
Alphaproteobacteria
GAC
Val
>WENV170233055
CEQI01205243
169247
Alphaproteobacteria
CCT
Arg
>WENV170232750
CEQI01097403
32718
Alphaproteobacteria
TGA
Ser
>WENV170232028
CEQI01016216
163875
Alphaproteobacteria
ACG
Arg
>WENV170232532
CEQI01070135
219821
Alphaproteobacteria
GTG
His
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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