This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179645 (97 seq.)
>W1711979149
NDGJ01000013
Bacillota
Paenibacillus apiarius [NDGJ]
904
980
+
Asp
GTC
[ENA]
¡û
>W1711979168
NDGJ01000035
Bacillota
Paenibacillus apiarius [NDGJ]
738
814
+
Asp
GTC
[ENA]
¡û
>W1711979190
NDGJ01000051
Bacillota
Paenibacillus apiarius [NDGJ]
642
718
+
Asp
GTC
[ENA]
¡û
>W1711979207
NDGK01000004
Bacillota
Paenibacillus thiaminolyticus [NDGK]
84350
84274
-
Asp
GTC
[ENA]
¡û
>W1711979216
NDGK01000010
Bacillota
Paenibacillus thiaminolyticus [NDGK]
207963
207887
-
Asp
GTC
[ENA]
¡û
>W1711979254
NDGK01000021
Bacillota
Paenibacillus thiaminolyticus [NDGK]
174376
174300
-
Asp
GTC
[ENA]
¡û
>C171098289
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
657774
657850
+
Asp
GTC
-
¡û
>C171098297
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
665482
665558
+
Asp
GTC
-
¡û
>C171098320
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
2970323
2970399
+
Asp
GTC
-
¡û
>W131176695
ARKG01000037
Bacillota
Cohnella laeviribosi DSM 21336 [ARKG]
8285
8209
-
Asp
GTC
[ENA]
¡û
>W131203807
ASZU01000004
Bacillota
Laceyella sacchari 1·î1Æü [ASZU]
337239
337163
-
Asp
GTC
[ENA]
¡û
>W131203821
ASZU01000011
Bacillota
Laceyella sacchari 1·î1Æü [ASZU]
742
818
+
Asp
GTC
[ENA]
¡û
>W131203827
ASZU01000020
Bacillota
Laceyella sacchari 1·î1Æü [ASZU]
61273
61197
-
Asp
GTC
[ENA]
¡û
>W131203834
ASZU01000020
Bacillota
Laceyella sacchari 1·î1Æü [ASZU]
33266
33190
-
Asp
GTC
[ENA]
¡û
>W131219091
ATYG01000019
Bacillota
Carboxydothermus ferrireducens DSM 11255 [ATYG]
46721
46797
+
Asp
GTC
[ENA]
¡û
>W131223379
AUCA01000010
Bacillota
Alicyclobacillus contaminans DSM 17975 [AUCA]
13542
13618
+
Asp
GTC
[ENA]
¡û
>W131223396
AUCA01000028
Bacillota
Alicyclobacillus contaminans DSM 17975 [AUCA]
27673
27597
-
Asp
GTC
[ENA]
¡û
>W131223418
AUCA01000039
Bacillota
Alicyclobacillus contaminans DSM 17975 [AUCA]
755
679
-
Asp
GTC
[ENA]
¡û
>W131236333
AUMH01000026
Bacillota
Alicyclobacillus herbarius DSM 13609 [AUMH]
24275
24199
-
Asp
GTC
[ENA]
¡û
>W131236345
AUMH01000026
Bacillota
Alicyclobacillus herbarius DSM 13609 [AUMH]
870
794
-
Asp
GTC
[ENA]
¡û
>W131239099
BALG01000016
Bacillota
Paenibacillus popilliae ATCC 14706 [BALG]
493
569
+
Asp
GTC
[ENA]
¡û
>W131239109
BALG01000024
Bacillota
Paenibacillus popilliae ATCC 14706 [BALG]
534
610
+
Asp
GTC
[ENA]
¡û
>W131239134
BALG01000219
Bacillota
Paenibacillus popilliae ATCC 14706 [BALG]
615
691
+
Asp
GTC
[ENA]
¡û
>W131242968
CAOS01000008
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
246287
246211
-
Asp
GTC
[ENA]
¡û
>W131242974
CAOS01000009
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
95156
95232
+
Asp
GTC
[ENA]
¡û
>W131242982
CAOS01000009
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
98707
98783
+
Asp
GTC
[ENA]
¡û
>C005904
CP000141
Bacillota
Carboxydothermus hydrogenoformans Z-2901 [CP000141]
1456122
1456046
-
Asp
GTC
[Ensembl]
¡û
>C007999
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
531315
531391
+
Asp
GTC
[Ensembl]
¡û
>C008007
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
534865
534941
+
Asp
GTC
[Ensembl]
¡û
>C008023
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
3166197
3166273
+
Asp
GTC
[Ensembl]
¡û
>W141150901
AXAR01000004
Bacillota
Alicyclobacillus pomorum DSM 14955 [AXAR]
130116
130040
-
Asp
GTC
[ENA]
¡û
>WENV181801254
OGSB01000024
[OGSB] human gut metagenome; fecal sample 5 from infant 3
63
139
+
Asp
GTC
[ENA]
¢þ
>WENV181801347
OGSB01000112
[OGSB] human gut metagenome; fecal sample 5 from infant 3
80368
80292
-
Asp
GTC
[ENA]
¢þ
>WENV181810413
OGSV01000040
[OGSV] human gut metagenome; fecal sample 4 from infant 3
298
374
+
Asp
GTC
[ENA]
¢þ
>WENV181822917
OGUH01000217
[OGUH] human gut metagenome; fecal sample 3 from infant 3
22248
22172
-
Asp
GTC
[ENA]
¢þ
>WENV170563801
CZCB01030209
[CZCB] anaerobic digester metagenome; anaerobic digester
587
511
-
Asp
GTC
[ENA]
¢þ
>WENV170671629
LAHU01110575
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
427
503
+
Asp
GTC
[ENA]
¢þ
>WENV170677651
LDZT01007724
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1438
1514
+
Asp
GTC
[ENA]
¢þ
>WENV170686179
LFRM01130041
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4287
4363
+
Asp
GTC
[ENA]
¢þ
>WENV170686940
LFRM01170245
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2810
2886
+
Asp
GTC
[ENA]
¢þ
>WENV170690285
LFRM01333594
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
9263
9187
-
Asp
GTC
[ENA]
¢þ
>WENV170691138
LFRM01381950
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
291
367
+
Asp
GTC
[ENA]
¢þ
>WENV170717847
LSQX01052034
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
691
615
-
Asp
GTC
[ENA]
¢þ
>WENV170719877
LSQX01132275
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
24922
24846
-
Asp
GTC
[ENA]
¢þ
>W141564740
JIAZ01000037
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
875
951
+
Asp
GTC
[ENA]
¡û
>W09105190
AAOP01000081
Bacillota
Desulforamulus reducens MI-1 [AAOP]
842
766
-
Asp
GTC
[ENA]
¡û
>W09126252
ACJM01000017
Bacillota
Dethiobacter alkaliphilus AHT 1 [ACJM]
33500
33424
-
Asp
GTC
[ENA]
¡û
>W1910004964
AWVY01000037
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
42349
42273
-
Asp
GTC
[ENA]
¡û
>W1910155150
BIMI01000014
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
84280
84204
-
Asp
GTC
[ENA]
¡û
>W1910155179
BIMI01000183
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
528
452
-
Asp
GTC
[ENA]
¡û
>W1910155190
BIMI01000186
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
171
95
-
Asp
GTC
[ENA]
¡û
>W1911661984
QFFZ01000061
Bacillota
Pelotomaculum propionicicum MGP [QFFZ]
8221
8297
+
Asp
GTC
[ENA]
¡û
>W1911809784
QYZD01000026
Bacillota
Paenibacillus thiaminolyticus BO5 [QYZD]
75662
75586
-
Asp
GTC
[ENA]
¡û
>W1911809796
QYZD01000032
Bacillota
Paenibacillus thiaminolyticus BO5 [QYZD]
559
635
+
Asp
GTC
[ENA]
¡û
>W1911809818
QYZD01000061
Bacillota
Paenibacillus thiaminolyticus BO5 [QYZD]
15790
15714
-
Asp
GTC
[ENA]
¡û
>W1810683197
QKVW01000009
Bacillota
Paenibacillus dendritiformis PV3-16 [QKVW]
531
607
+
Asp
GTC
[ENA]
¡û
>W1810683236
QKVW01000131
Bacillota
Paenibacillus dendritiformis PV3-16 [QKVW]
449
525
+
Asp
GTC
[ENA]
¡û
>W1810683245
QKVW01000144
Bacillota
Paenibacillus dendritiformis PV3-16 [QKVW]
21019
20943
-
Asp
GTC
[ENA]
¡û
>C11106937
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
2551184
2551108
-
Asp
GTC
[Ensembl]
¡û
>C11106944
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
2547836
2547760
-
Asp
GTC
[Ensembl]
¡û
>C11106956
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
461937
461861
-
Asp
GTC
[Ensembl]
¡û
>W1511499716
JXAL01000001
Bacillota
Cohnella kolymensis VKM B-2846 [JXAL]
764425
764349
-
Asp
GTC
[ENA]
¡û
>W1511499740
JXAL01000013
Bacillota
Cohnella kolymensis VKM B-2846 [JXAL]
816
892
+
Asp
GTC
[ENA]
¡û
>W11150352
AEVP01000001
Bacillota
Desulfotomaculum nigrificans DSM 574 [AEVP]
13873
13949
+
Asp
GTC
[ENA]
¡û
>W11150359
AEVP01000001
Bacillota
Desulfotomaculum nigrificans DSM 574 [AEVP]
17221
17297
+
Asp
GTC
[ENA]
¡û
>W11150393
AEVP01000029
Bacillota
Desulfotomaculum nigrificans DSM 574 [AEVP]
19271
19347
+
Asp
GTC
[ENA]
¡û
>W11157536
AFCE01000002
Bacillota
Caldalkalibacillus thermarum TA2.A1 [AFCE]
331
407
+
Asp
GTC
[ENA]
¡û
>C161058339
CP013653
Bacillota
Paenibacillus sp. 32O-W [CP013653]
4665119
4665043
-
Asp
GTC
[Ensembl]
¡û
>C161058353
CP013653
Bacillota
Paenibacillus sp. 32O-W [CP013653]
3550597
3550521
-
Asp
GTC
[Ensembl]
¡û
>C161058362
CP013653
Bacillota
Paenibacillus sp. 32O-W [CP013653]
194872
194796
-
Asp
GTC
[Ensembl]
¡û
>W1610067822
BCQV01000002
Bacillota
Alicyclobacillus shizuokensis NBRC 103103 [BCQV]
143420
143344
-
Asp
GTC
[ENA]
¡û
>W1610067857
BCQV01000141
Bacillota
Alicyclobacillus shizuokensis NBRC 103103 [BCQV]
572
496
-
Asp
GTC
[ENA]
¡û
>W1610068810
BCRP01000030
Bacillota
Alicyclobacillus kakegawensis NBRC 103104 [BCRP]
56
132
+
Asp
GTC
[ENA]
¡û
>W1610068819
BCRP01000030
Bacillota
Alicyclobacillus kakegawensis NBRC 103104 [BCRP]
3450
3526
+
Asp
GTC
[ENA]
¡û
>W1610606715
LFTE01000080
Bacillota
Peptococcaceae bacterium DTU027 [LFTE]
2810
2886
+
Asp
GTC
[ENA]
¡û
>W1610614100
LGGS01000160
Bacillota
Pelotomaculum thermopropionicum [LGGS]
1438
1514
+
Asp
GTC
[ENA]
¡û
>W1710065195
BCQV01000002
Bacillota
Alicyclobacillus shizuokensis NBRC 103103 [BCQV]
143420
143344
-
Asp
GTC
[ENA]
¡û
>W1710065230
BCQV01000141
Bacillota
Alicyclobacillus shizuokensis NBRC 103103 [BCQV]
572
496
-
Asp
GTC
[ENA]
¡û
>W1710066183
BCRP01000030
Bacillota
Alicyclobacillus kakegawensis NBRC 103104 [BCRP]
56
132
+
Asp
GTC
[ENA]
¡û
>W1710066192
BCRP01000030
Bacillota
Alicyclobacillus kakegawensis NBRC 103104 [BCRP]
3450
3526
+
Asp
GTC
[ENA]
¡û
>W1710083595
BDJL01000019
Bacillota
Carboxydothermus islandicus [BDJL]
66201
66277
+
Asp
GTC
[ENA]
¡û
>W1710531302
FNPL01000007
Bacillota
Thermoactinomyces sp. DSM 45892 [FNPL]
118694
118770
+
Asp
GTC
[ENA]
¡û
>W1710531334
FNPL01000020
Bacillota
Thermoactinomyces sp. DSM 45892 [FNPL]
36535
36611
+
Asp
GTC
[ENA]
¡û
>W1710547039
FOCQ01000005
Bacillota
Lihuaxuella thermophila [FOCQ]
180592
180668
+
Asp
GTC
[ENA]
¡û
>W1710547062
FOCQ01000010
Bacillota
Lihuaxuella thermophila [FOCQ]
2385
2461
+
Asp
GTC
[ENA]
¡û
>W1710547069
FOCQ01000010
Bacillota
Lihuaxuella thermophila [FOCQ]
80934
81010
+
Asp
GTC
[ENA]
¡û
>W1710583621
FQUY01000008
Bacillota
Desulforamulus putei DSM 12395 [FQUY]
40047
39971
-
Asp
GTC
[ENA]
¡û
>W1710583628
FQUY01000008
Bacillota
Desulforamulus putei DSM 12395 [FQUY]
36715
36639
-
Asp
GTC
[ENA]
¡û
>W1710583643
FQUY01000014
Bacillota
Desulforamulus putei DSM 12395 [FQUY]
1713
1637
-
Asp
GTC
[ENA]
¡û
>W1710586439
FQXF01000005
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
24056
24132
+
Asp
GTC
[ENA]
¡û
>W1710586470
FQXF01000016
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
466
390
-
Asp
GTC
[ENA]
¡û
>W1710586491
FQXF01000032
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
3313
3389
+
Asp
GTC
[ENA]
¡û
>W1710589486
FRAF01000006
Bacillota
Alicyclobacillus montanus USBA-503 [FRAF]
55882
55806
-
Asp
GTC
[ENA]
¡û
>W1710590031
FRAR01000009
Bacillota
Desulforamulus aeronauticus DSM 10349 [FRAR]
48109
48185
+
Asp
GTC
[ENA]
¡û
>W1710590039
FRAR01000009
Bacillota
Desulforamulus aeronauticus DSM 10349 [FRAR]
52898
52974
+
Asp
GTC
[ENA]
¡û
>W1710728002
LFTE01000080
Bacillota
Peptococcaceae bacterium DTU027 [LFTE]
2810
2886
+
Asp
GTC
[ENA]
¡û
>W1710735183
LGGS01000160
Bacillota
Pelotomaculum thermopropionicum [LGGS]
1438
1514
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK