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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TTC
HIT:
26 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240793 (1 seq.)
>SRA1025636
SRR035085.54455
454 Sequencing (SRP001806)
189
112
-
Glu
TTC
[SRA]
Identical group No.240820 (1 seq.)
>SRA1026268
SRR035085.175913
454 Sequencing (SRP001806)
76
152
+
Glu
TTC
[SRA]
Identical group No.240825 (3 seq.)
>WENV183806104
PVBE011085057
[PVBE] marine metagenome; water
911
835
-
Glu
TTC
[ENA]
¢þ
>WENV170017333
BART01016896
[BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula
171
95
-
Glu
TTC
[ENA]
¢þ
>SRA1026424
SRR035085.205046
454 Sequencing (SRP001806)
213
139
-
Glu
TTC
[SRA]
Identical group No.240826 (2 seq.)
>WENV170001050
AGBJ01001551
[AGBJ] hypersaline lake metagenome; upper interface of the deep-sea hypersaline anoxic lake (DHAL) Thetis located South-East
317
394
+
Glu
TTC
[ENA]
¢þ
>SRA1026440
SRR035085.207271
454 Sequencing (SRP001806)
76
153
+
Glu
TTC
[SRA]
Identical group No.240841 (1 seq.)
>SRA1026724
SRR035085.272431
454 Sequencing (SRP001806)
23
100
+
Glu
TTC
[SRA]
Identical group No.272353 (2 seq.)
>WENV170612776
FUWD012686392
[FUWD] metagenome; unknown
201
277
+
Glu
TTC
[ENA]
¢þ
>SRA1026090
SRR035085.140992
454 Sequencing (SRP001806)
107
31
-
Glu
TTC
[SRA]
Identical group No.272405 (3 seq.)
>WENV170612631
FUWD012648253
[FUWD] metagenome; unknown
194
267
+
Glu
TTC
[ENA]
¢þ
>SRA1026427
SRR035085.205749
454 Sequencing (SRP001806)
181
108
-
Glu
TTC
[SRA]
>SRA1043928
SRR035092.196137
454 Sequencing (SRP001813)
194
267
+
Glu
TTC
[SRA]
Identical group No.272406 (2 seq.)
>SRA1026429
SRR035085.205850
454 Sequencing (SRP001806)
80
154
+
Glu
TTC
[SRA]
>SRA1026809
SRR035085.297183
454 Sequencing (SRP001806)
82
156
+
Glu
TTC
[SRA]
Identical group No.453208 (3 seq.)
>W131193328
ASOB01000011
Unclassified
Acetothermia bacterium SCGC AAA255-C06 OP1 bacterium SCGC AAA255-C06 [ASOB]
2710
2785
+
Glu
TTC
[ENA]
¡û
>SRA1025472
SRR035085.18584
454 Sequencing (SRP001806)
151
226
+
Glu
TTC
[SRA]
>SRA1026093
SRR035085.141319
454 Sequencing (SRP001806)
153
228
+
Glu
TTC
[SRA]
Identical group No.453247 (7 seq.)
>WENV170607835
FUWD010859527
[FUWD] metagenome; unknown
410
337
-
Glu
TTC
[ENA]
¢þ
>WENV170779064
LZCG01000250
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
2318
2393
+
Glu
TTC
[ENA]
¢þ
>SRA1025641
SRR035085.55200
454 Sequencing (SRP001806)
254
181
-
Glu
TTC
[SRA]
>SRA1025706
SRR035085.69903
454 Sequencing (SRP001806)
25
98
+
Glu
TTC
[SRA]
>SRA1026040
SRR035085.131818
454 Sequencing (SRP001806)
25
98
+
Glu
TTC
[SRA]
>SRA1026046
SRR035085.132141
454 Sequencing (SRP001806)
25
98
+
Glu
TTC
[SRA]
>SRA1026233
SRR035085.168451
454 Sequencing (SRP001806)
112
185
+
Glu
TTC
[SRA]
Identical group No.453281 (13 seq.)
>WENV170615976
FUWD012873352
[FUWD] metagenome; unknown
91
16
-
Glu
TTC
[ENA]
¢þ
>WENV170624180
FUWD013177114
[FUWD] metagenome; unknown
2379
2304
-
Glu
TTC
[ENA]
¢þ
>WENV170632464
FUWD013382943
[FUWD] metagenome; unknown
2379
2304
-
Glu
TTC
[ENA]
¢þ
>SRA1025772
SRR035085.80386
454 Sequencing (SRP001806)
149
224
+
Glu
TTC
[SRA]
>SRA1026349
SRR035085.190911
454 Sequencing (SRP001806)
234
309
+
Glu
TTC
[SRA]
>SRA1029137
SRR035087.79394
454 Sequencing (SRP001808)
390
315
-
Glu
TTC
[SRA]
>SRA1029167
SRR035087.86178
454 Sequencing (SRP001808)
82
7
-
Glu
TTC
[SRA]
>SRA1031889
SRR035087.506055
454 Sequencing (SRP001808)
91
16
-
Glu
TTC
[SRA]
>SRA1035520
SRR035089.323038
454 Sequencing (SRP001810)
58
133
+
Glu
TTC
[SRA]
>SRA1047886
SRR035094.61648
454 Sequencing (SRP001815)
112
187
+
Glu
TTC
[SRA]
>SRA1048040
SRR035094.96881
454 Sequencing (SRP001815)
112
187
+
Glu
TTC
[SRA]
>SRA1048280
SRR035094.138893
454 Sequencing (SRP001815)
33
108
+
Glu
TTC
[SRA]
>SRA1048349
SRR035094.153267
454 Sequencing (SRP001815)
125
200
+
Glu
TTC
[SRA]
Identical group No.453288 (3 seq.)
>WENV170611490
FUWD012330782
[FUWD] metagenome; unknown
181
256
+
Glu
TTC
[ENA]
¢þ
>SRA1016961
SRR035082.60927
454 Sequencing (SRP001803)
181
256
+
Glu
TTC
[SRA]
>SRA1025814
SRR035085.88129
454 Sequencing (SRP001806)
119
44
-
Glu
TTC
[SRA]
Identical group No.453326 (7 seq.)
>WENV183512267
OMKS01000194
[OMKS] sediment metagenome; hot spring sediment
52326
52399
+
Glu
TTC
[ENA]
¢þ
>WENV170603326
FUWD010302346
[FUWD] metagenome; unknown
152
228
+
Glu
TTC
[ENA]
¢þ
>SRA1026016
SRR035085.127276
454 Sequencing (SRP001806)
118
194
+
Glu
TTC
[SRA]
>SRA1028818
SRR035087.14707
454 Sequencing (SRP001808)
130
206
+
Glu
TTC
[SRA]
>SRA1029673
SRR035087.161783
454 Sequencing (SRP001808)
342
266
-
Glu
TTC
[SRA]
>SRA1034530
SRR035089.116502
454 Sequencing (SRP001810)
152
228
+
Glu
TTC
[SRA]
>W1610004860
AHKP01000003
Euryarchaeota
Methanoplanus limicola DSM 2279 [AHKP]
78862
78936
+
Glu
TTC
[ENA]
¡û
Identical group No.453397 (1 seq.)
>SRA1026448
SRR035085.208683
454 Sequencing (SRP001806)
10
83
+
Glu
TTC
[SRA]
Identical group No.654229 (1 seq.)
>SRA1025444
SRR035085.7979
454 Sequencing (SRP001806)
88
14
-
Glu
TTC
[SRA]
Identical group No.654233 (4 seq.)
>WENV170626667
FUWD013228169
[FUWD] metagenome; unknown
830
758
-
Glu
TTC
[ENA]
¢þ
>SRA1025478
SRR035085.19042
454 Sequencing (SRP001806)
181
109
-
Glu
TTC
[SRA]
>SRA1025498
SRR035085.25480
454 Sequencing (SRP001806)
181
109
-
Glu
TTC
[SRA]
>SRA1029403
SRR035087.122127
454 Sequencing (SRP001808)
106
34
-
Glu
TTC
[SRA]
Identical group No.654235 (21 seq.)
>W131157549
AQSK01000184
Unclassified
Cloacimonetes bacterium SCGC AAA252-E13 KSB1 bacterium SCGC AAA252-E13 [AQSK]
7619
7693
+
Glu
TTC
[ENA]
¡û
>W131157626
AQSM01000141
Unclassified
Cloacimonetes bacterium SCGC AAA252-N14 KSB1 bacterium SCGC AAA252-N14 [AQSM]
16670
16744
+
Glu
TTC
[ENA]
¡û
>W131192127
ASKN01000056
Unclassified
Cloacimonetes bacterium SCGC AAA252-F02 KSB1 bacterium SCGC AAA252-F02 [ASKN]
261
335
+
Glu
TTC
[ENA]
¡û
>W131192139
ASKO01000016
Unclassified
Cloacimonetes bacterium SCGC AAA252-M08 KSB1 bacterium SCGC AAA252-M08 [ASKO]
31559
31485
-
Glu
TTC
[ENA]
¡û
>W131192183
ASKQ01000075
Unclassified
Cloacimonetes bacterium SCGC AAA252-O17 KSB1 bacterium SCGC AAA252-O17 [ASKQ]
7298
7372
+
Glu
TTC
[ENA]
¡û
>W131192925
ASNG01000021
Unclassified
Cloacimonetes bacterium SCGC AAA252-O02 KSB1 bacterium SCGC AAA252-O02 [ASNG]
9366
9292
-
Glu
TTC
[ENA]
¡û
>W131192982
ASNI01000021
Unclassified
Cloacimonetes bacterium SCGC AAA252-N17 KSB1 bacterium SCGC AAA252-N17 [ASNI]
32807
32733
-
Glu
TTC
[ENA]
¡û
>W131193005
ASNJ01000027
Unclassified
Cloacimonetes bacterium SCGC AAA252-N11 KSB1 bacterium SCGC AAA252-N11 [ASNJ]
11102
11176
+
Glu
TTC
[ENA]
¡û
>W131193034
ASNK01000049
Unclassified
Cloacimonetes bacterium SCGC AAA252-E20 KSB1 bacterium SCGC AAA252-E20 [ASNK]
1921
1995
+
Glu
TTC
[ENA]
¡û
>W131193089
ASNN01000065
Unclassified
Cloacimonetes bacterium SCGC AAA252-I11 KSB1 bacterium SCGC AAA252-I11 [ASNN]
7149
7223
+
Glu
TTC
[ENA]
¡û
>W131193120
ASNO01000038
Unclassified
Cloacimonetes bacterium SCGC AAA252-I16 KSB1 bacterium SCGC AAA252-I16 [ASNO]
12242
12316
+
Glu
TTC
[ENA]
¡û
>W131193170
ASNS01000020
Unclassified
Cloacimonetes bacterium SCGC AAA252-P02 KSB1 bacterium SCGC AAA252-P02 [ASNS]
12241
12315
+
Glu
TTC
[ENA]
¡û
>W131193191
ASNT01000027
Unclassified
Cloacimonetes bacterium SCGC AAA252-P10 KSB1 bacterium SCGC AAA252-P10 [ASNT]
16726
16800
+
Glu
TTC
[ENA]
¡û
>W141139690
AWNX01000036
Unclassified
Cloacimonetes bacterium JGI OTU-1 [AWNX]
23714
23640
-
Glu
TTC
[ENA]
¡û
>WENV170624984
FUWD013189453
[FUWD] metagenome; unknown
2909
2835
-
Glu
TTC
[ENA]
¢þ
>WENV170633244
FUWD013393053
[FUWD] metagenome; unknown
2909
2835
-
Glu
TTC
[ENA]
¢þ
>SRA1025480
SRR035085.19583
454 Sequencing (SRP001806)
101
175
+
Glu
TTC
[SRA]
>SRA1025751
SRR035085.76480
454 Sequencing (SRP001806)
102
176
+
Glu
TTC
[SRA]
>SRA1029901
SRR035087.198904
454 Sequencing (SRP001808)
122
48
-
Glu
TTC
[SRA]
>SRA1030769
SRR035087.329414
454 Sequencing (SRP001808)
540
466
-
Glu
TTC
[SRA]
>SRA1034831
SRR035089.181719
454 Sequencing (SRP001810)
74
148
+
Glu
TTC
[SRA]
Identical group No.654272 (7 seq.)
>WENV180296479
OBJA01000640
[OBJA] soil metagenome; sediment, water from around vicinity
28585
28511
-
Glu
TTC
[ENA]
¢þ
>WENV183194140
OLPS01027027
[OLPS] human gut metagenome; faeces
582
508
-
Glu
TTC
[ENA]
¢þ
>WENV183722270
PDWJ01115883
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
578
504
-
Glu
TTC
[ENA]
¢þ
>WENV170645287
JMSV01000021
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
32005
32079
+
Glu
TTC
[ENA]
¢þ
>WENV170645447
JMSV01005166
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
434
508
+
Glu
TTC
[ENA]
¢þ
>SRA1025757
SRR035085.77927
454 Sequencing (SRP001806)
284
210
-
Glu
TTC
[SRA]
>SRA1031532
SRR035087.445479
454 Sequencing (SRP001808)
303
229
-
Glu
TTC
[SRA]
Identical group No.654280 (3 seq.)
>WENV170571129
FLOH01000075
[FLOH] marine metagenome; water
192880
192808
-
Glu
TTC
[ENA]
¢þ
>WENV170602719
FUWD010257517
[FUWD] metagenome; unknown
380
308
-
Glu
TTC
[ENA]
¢þ
>SRA1025808
SRR035085.87302
454 Sequencing (SRP001806)
471
399
-
Glu
TTC
[SRA]
Identical group No.654292 (3 seq.)
>WENV170612006
FUWD012480960
[FUWD] metagenome; unknown
180
254
+
Glu
TTC
[ENA]
¢þ
>SRA1025888
SRR035085.103413
454 Sequencing (SRP001806)
302
228
-
Glu
TTC
[SRA]
>SRA1042923
SRR035091.467797
454 Sequencing (SRP001812)
140
66
-
Glu
TTC
[SRA]
Identical group No.654324 (1 seq.)
>SRA1026156
SRR035085.154962
454 Sequencing (SRP001806)
326
252
-
Glu
TTC
[SRA]
Identical group No.654325 (4 seq.)
>WENV170623440
FUWD013151533
[FUWD] metagenome; unknown
1012
1086
+
Glu
TTC
[ENA]
¢þ
>WENV170631707
FUWD013362492
[FUWD] metagenome; unknown
1012
1086
+
Glu
TTC
[ENA]
¢þ
>SRA1026163
SRR035085.156278
454 Sequencing (SRP001806)
88
14
-
Glu
TTC
[SRA]
>SRA1043223
SRR035092.75882
454 Sequencing (SRP001813)
54
128
+
Glu
TTC
[SRA]
Identical group No.654346 (2 seq.)
>SRA1026328
SRR035085.186443
454 Sequencing (SRP001806)
121
49
-
Glu
TTC
[SRA]
>SRA1044529
SRR035092.294524
454 Sequencing (SRP001813)
299
371
+
Glu
TTC
[SRA]
Identical group No.654374 (2 seq.)
>SRA1026502
SRR035085.217642
454 Sequencing (SRP001806)
309
381
+
Glu
TTC
[SRA]
>SRA1044810
SRR035092.349588
454 Sequencing (SRP001813)
431
359
-
Glu
TTC
[SRA]
Identical group No.654389 (5 seq.)
>WENV170608179
FUWD010899430
[FUWD] metagenome; unknown
79
151
+
Glu
TTC
[ENA]
¢þ
>SRA1026605
SRR035085.238828
454 Sequencing (SRP001806)
169
241
+
Glu
TTC
[SRA]
>SRA1038890
SRR035090.389045
454 Sequencing (SRP001811)
267
195
-
Glu
TTC
[SRA]
>SRA1049916
SRR035095.159669
454 Sequencing (SRP001816)
214
286
+
Glu
TTC
[SRA]
>SRA1050710
SRR035095.334490
454 Sequencing (SRP001816)
214
286
+
Glu
TTC
[SRA]
Identical group No.779799 (1 seq.)
>SRA1025801
SRR035085.86047
454 Sequencing (SRP001806)
273
346
+
Glu
TTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK