tRNA genes clustered and arranged according to each identical group

Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)

Anticodon = CAT

HIT: 16 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.256228 (1 seq.)
>SRA1002529 SRR001325.103422 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 83 9 - Met CAT [SRA]
Identical group No.266334 (1 seq.)
>SRA1002353 SRR001322.58866 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 28 104 + Met CAT [SRA]
Identical group No.381057 (1 seq.)
>SRA1002461 SRR001324.34939 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 115 39 - Met CAT [SRA]
Identical group No.562809 (1 seq.)
>SRA1002494 SRR001325.9626 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 77 4 - Met CAT [SRA]
Identical group No.628133 (1 seq.)
>SRA1002351 SRR001322.54555 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 27 102 + Met CAT [SRA]
Identical group No.628134 (1 seq.)
>SRA1002362 SRR001322.71991 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 104 29 - Met CAT [SRA]
Identical group No.639917 (1 seq.)
>SRA1002440 SRR001323.149686 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 40 114 + Met CAT [SRA]
Identical group No.668222 (9 seq.)
>WENV170017307 BART01010872 [BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula 73 1 - Met CAT [ENA]
>WENV170017729 BARU01018546 [BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula 212 284 + Met CAT [ENA]
>WENV170018000 BARV01003285 [BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula 1017 1089 + Met CAT [ENA]
>WENV170018133 BARV01017924 [BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula 642 570 - Met CAT [ENA]
>WENV170018198 BARV01024079 [BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula 228 156 - Met CAT [ENA]
>WENV170209593 CEPV01073035 [CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2351 2425 + Met CAT [ENA]
>WENV170647754 JREQ01004007 [JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C 1167 1239 + Met CAT [ENA]
>SRA1002406 SRR001323.61612 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 20 92 + Met CAT [SRA]
>SRA1002415 SRR001323.87094 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 20 92 + Met CAT [SRA]
Identical group No.668239 (4 seq.)
>WENV170018078 BARV01010189 [BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula 266 338 + Met CAT [ENA]
>WENV170018388 BARW01007724 [BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula 80 8 - Met CAT [ENA]
>WENV170018497 BARW01028631 [BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula 250 178 - Met CAT [ENA]
>SRA1002534 SRR001325.117198 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 89 17 - Met CAT [SRA]
Identical group No.700983 (4 seq.)
>WENV181414072 OGCK01212774 [OGCK] hot springs metagenome; hot spring sediment 481 407 - fMet CAT [ENA]
>WENV170216586 CEPX01212103 [CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 442 514 + Met CAT [ENA]
>SRA1002513 SRR001325.69608 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 42 113 + Met CAT [SRA]
>SRA1002524 SRR001325.91148 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 42 113 + Met CAT [SRA]
Identical group No.710766 (5 seq.)
>WENV170607665 FUWD010845993 [FUWD] metagenome; unknown 222 148 - Met CAT [ENA]
>SRA1002379 SRR001322.121696 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 98 24 - Met CAT [SRA]
>SRA1013422 SRR023396.15870 Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095) 75 149 + Met CAT [SRA]
>SRA1017321 SRR035082.119174 454 Sequencing (SRP001803) 222 148 - Met CAT [SRA]
>SRA1018313 SRR035082.271853 454 Sequencing (SRP001803) 258 184 - Met CAT [SRA]
Identical group No.726858 (2 seq.)
>SRA1002454 SRR001324.21346 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 19 90 + Met CAT [SRA]
>SRA1002481 SRR001324.72716 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 19 90 + Met CAT [SRA]
Identical group No.726859 (1 seq.)
>SRA1002455 SRR001324.23157 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 24 96 + Met CAT [SRA]
Identical group No.761291 (1 seq.)
>SRA1002366 SRR001322.84452 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 48 119 + Met CAT [SRA]
Identical group No.771057 (1 seq.)
>SRA1002395 SRR001323.43298 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 80 6 - Met CAT [SRA]
Identical group No.771061 (1 seq.)
>SRA1002416 SRR001323.88159 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 80 6 - Met CAT [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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