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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
70 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1003948
SRR002328.56313
297043
Betaproteobacteria
CAT
Met
>SRA1003210
SRR002326.307419
297043
Betaproteobacteria
CAT
Met
>SRA1002796
SRR002326.22042
452923
Betaproteobacteria
TTT
Lys
>SRA1003307
SRR002326.379999
454252
Betaproteobacteria
CGC
Ala
>SRA1003169
SRR002326.267705
655859
Betaproteobacteria
GGT
Thr
>SRA1002948
SRR002326.117426
275880
Betaproteobacteria
GAT
Ile
>SRA1002857
SRR002326.61453
275880
Betaproteobacteria
GAT
Ile
>SRA1002790
SRR002326.17369
275880
Betaproteobacteria
GAT
Ile
>SRA1003651
SRR002327.96503
456398
Betaproteobacteria
GAA
Phe
>SRA1003585
SRR002327.50024
456398
Betaproteobacteria
GAA
Phe
>SRA1002963
SRR002326.126972
456398
Betaproteobacteria
GAA
Phe
>SRA1003502
SRR002326.510757
454455
Betaproteobacteria
CCG
Arg
>SRA1003323
SRR002326.390184
454455
Betaproteobacteria
CCG
Arg
>SRA1003294
SRR002326.370320
454455
Betaproteobacteria
CCG
Arg
>SRA1003290
SRR002326.368462
454455
Betaproteobacteria
CCG
Arg
>SRA1003284
SRR002326.365840
454455
Betaproteobacteria
CCG
Arg
>SRA1003086
SRR002326.188858
454455
Betaproteobacteria
CCG
Arg
>SRA1002902
SRR002326.87648
454455
Betaproteobacteria
CCG
Arg
>SRA1003658
SRR002327.101803
456400
Betaproteobacteria
TTC
Glu
>SRA1003234
SRR002326.326863
456400
Betaproteobacteria
TTC
Glu
>SRA1004213
SRR002328.203574
780146
Betaproteobacteria
CCC
Gly
>SRA1002811
SRR002326.31606
780146
Betaproteobacteria
CCC
Gly
>SRA1004149
SRR002328.172717
452595
Betaproteobacteria
GTT
Asn
>SRA1004019
SRR002328.98486
452595
Betaproteobacteria
GTT
Asn
>SRA1004018
SRR002328.98486
452595
Betaproteobacteria
GTT
Asn
>SRA1003969
SRR002328.65499
452595
Betaproteobacteria
GTT
Asn
>SRA1003654
SRR002327.98037
452595
Betaproteobacteria
GTT
Asn
>SRA1003624
SRR002327.71906
452595
Betaproteobacteria
GTT
Asn
>SRA1003623
SRR002327.71906
452595
Betaproteobacteria
GTT
Asn
>SRA1003165
SRR002326.264531
452595
Betaproteobacteria
GTT
Asn
>SRA1003075
SRR002326.183360
452595
Betaproteobacteria
GTT
Asn
>SRA1003037
SRR002326.165342
452595
Betaproteobacteria
GTT
Asn
>SRA1004137
SRR002328.167224
457359
Betaproteobacteria
TTT
Lys
>SRA1003998
SRR002328.89399
457359
Betaproteobacteria
TTT
Lys
>SRA1003733
SRR002327.150608
457359
Betaproteobacteria
TTT
Lys
>SRA1002785
SRR002326.12879
457359
Betaproteobacteria
TTT
Lys
>SRA1003213
SRR002326.308831
456523
Betaproteobacteria
TTC
Glu
>SRA1003148
SRR002326.243255
456523
Betaproteobacteria
TTC
Glu
>SRA1002860
SRR002326.62842
456523
Betaproteobacteria
TTC
Glu
>SRA1003412
SRR002326.451314
180358
Betaproteobacteria
CAG
Leu
>SRA1003835
SRR002327.219092
273483
Betaproteobacteria
ACG
Arg
>SRA1003728
SRR002327.146921
273483
Betaproteobacteria
ACG
Arg
>SRA1003643
SRR002327.87127
273483
Betaproteobacteria
ACG
Arg
>SRA1003602
SRR002327.62690
273483
Betaproteobacteria
ACG
Arg
>SRA1003449
SRR002326.477394
273483
Betaproteobacteria
ACG
Arg
>SRA1003366
SRR002326.413180
273483
Betaproteobacteria
ACG
Arg
>SRA1003017
SRR002326.153095
273483
Betaproteobacteria
ACG
Arg
>SRA1003445
SRR002326.473478
455528
Betaproteobacteria
CCG
Arg
>SRA1002974
SRR002326.130860
455528
Betaproteobacteria
CCG
Arg
>SRA1004034
SRR002328.106513
282077
Betaproteobacteria
TTG
Gln
>SRA1003614
SRR002327.68507
282077
Betaproteobacteria
TTG
Gln
>SRA1003377
SRR002326.421428
282077
Betaproteobacteria
TTG
Gln
>SRA1003334
SRR002326.397668
282077
Betaproteobacteria
TTG
Gln
>SRA1002920
SRR002326.102118
282077
Betaproteobacteria
TTG
Gln
>SRA1003976
SRR002328.68302
465310
Betaproteobacteria
TGC
Ala
>SRA1003599
SRR002327.59901
465310
Betaproteobacteria
TGC
Ala
>SRA1004037
SRR002328.109162
452596
Betaproteobacteria
GTT
Asn
>SRA1003939
SRR002328.50074
477700
Betaproteobacteria
GCC
Gly
>SRA1004158
SRR002328.176774
283585
Betaproteobacteria
CAT
Met
>SRA1004033
SRR002328.105765
283585
Betaproteobacteria
CAT
Met
>SRA1004110
SRR002328.152659
525560
Betaproteobacteria
GCC
Gly
>SRA1004015
SRR002328.97191
525560
Betaproteobacteria
GCC
Gly
>SRA1003851
SRR002327.234449
336760
Betaproteobacteria
GAT
Ile
>SRA1003606
SRR002327.65505
336760
Betaproteobacteria
GAT
Ile
>SRA1003630
SRR002327.76046
286012
Betaproteobacteria
CAT
Met
>SRA1003618
SRR002327.69569
455934
Betaproteobacteria
TTC
Glu
>SRA1003869
SRR002327.248035
273481
Betaproteobacteria
GGG
Pro
>SRA1003685
SRR002327.120926
273481
Betaproteobacteria
GGG
Pro
>SRA1003535
SRR002327.6310
273481
Betaproteobacteria
GGG
Pro
>SRA1003778
SRR002327.180594
780860
Betaproteobacteria
GCA
Cys
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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