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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
31 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1014199
SRR023845.36176
58796
Bacteroidota
TGT
Thr
>SRA1014993
SRR023845.416425
148131
Bacteroidota
GTT
Asn
>SRA1014509
SRR023845.172785
417016
Bacteroidota
GCA
Cys
>SRA1014539
SRR023845.189488
417016
Bacteroidota
GCA
Cys
>SRA1014466
SRR023845.151371
175704
Bacteroidota
TGC
Ala
>SRA1014616
SRR023845.228815
175704
Bacteroidota
TGC
Ala
>SRA1014687
SRR023845.263639
148133
Bacteroidota
CAT
Met
>SRA1014545
SRR023845.192877
95676
Bacteroidota
TAG
Leu
>SRA1015143
SRR023845.476809
95676
Bacteroidota
TAG
Leu
>SRA1014617
SRR023845.228920
171336
Bacteroidota
GGC
Ala
>SRA1014812
SRR023845.323050
254169
Bacteroidota
TCC
Gly
>SRA1014276
SRR023845.68048
80658
Bacteroidota
GTA
Tyr
>SRA1014739
SRR023845.291170
80658
Bacteroidota
GTA
Tyr
>SRA1015217
SRR023845.502732
96153
Bacteroidota
CAG
Leu
>SRA1014682
SRR023845.261094
238849
Bacteroidota
TTG
Gln
>SRA1014908
SRR023845.375845
238849
Bacteroidota
TTG
Gln
>SRA1014747
SRR023845.298200
129970
Bacteroidota
TAC
Val
>SRA1014178
SRR023845.29244
238847
Bacteroidota
GCC
Gly
>SRA1015142
SRR023845.476735
151405
Bacteroidota
TGC
Ala
>SRA1015072
SRR023845.448261
238846
Bacteroidota
CCC
Gly
>SRA1015119
SRR023845.466722
238846
Bacteroidota
CCC
Gly
>SRA1015128
SRR023845.470498
238846
Bacteroidota
CCC
Gly
>SRA1014994
SRR023845.416432
129238
Bacteroidota
TAC
Val
>SRA1014307
SRR023845.83485
235745
Bacteroidota
CCC
Gly
>SRA1014263
SRR023845.65739
174002
Bacteroidota
CAT
Met
>SRA1014278
SRR023845.68784
174002
Bacteroidota
CAT
Met
>SRA1014901
SRR023845.373227
174002
Bacteroidota
CAT
Met
>SRA1015060
SRR023845.445178
174002
Bacteroidota
CAT
Met
>SRA1015160
SRR023845.481770
174002
Bacteroidota
CAT
Met
>SRA1014809
SRR023845.322740
176247
Bacteroidota
TCT
Arg
>SRA1015166
SRR023845.483733
23771
Bacteroidota
CGA
Ser
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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