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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21235 (99 seq.)
>W1710785140
LJHP01000006
Alphaproteobacteria
Blastomonas sp. AAP25 [LJHP]
77760
77850
+
Ser
GGA
[ENA]
¡û
>W1710785389
LJHV01000001
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
38953
38863
-
Ser
GGA
[ENA]
¡û
>W1710866244
LMHH01000004
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
67501
67411
-
Ser
GGA
[ENA]
¡û
>W1710892814
LNED01000032
Alphaproteobacteria
Sphingomonadales bacterium Ga0077531 [LNED]
44861
44950
+
Ser
GGA
[ENA]
¡û
>W1710926905
LOET01000127
Alphaproteobacteria
Sphingomonadales bacterium BRH_c3 [LOET]
10116
10206
+
Ser
GGA
[ENA]
¡û
>W1710927015
LOEX01000051
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
11497
11407
-
Ser
GGA
[ENA]
¡û
>W131058800
ANFX01000039
Alphaproteobacteria
Porphyrobacter sp. AAP82 [ANFX]
1539
1629
+
Ser
GGA
[ENA]
¡û
>W1711051713
LRSE01000012
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
19073
18983
-
Ser
GGA
[ENA]
¡û
>W1711073953
LSJB01000318
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
42214
42124
-
Ser
GGA
[ENA]
¡û
>W1711074338
LSJK01000292
Alphaproteobacteria
Erythrobacter donghaensis [LSJK]
14084
14174
+
Ser
GGA
[ENA]
¡û
>W1711074567
LSJQ01000466
Alphaproteobacteria
Erythrobacter donghaensis [LSJQ]
11220
11130
-
Ser
GGA
[ENA]
¡û
>W1711074937
LSJZ01000139
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
8494
8584
+
Ser
GGA
[ENA]
¡û
>W1711075546
LSKM01000206
Alphaproteobacteria
Erythrobacter donghaensis [LSKM]
42412
42322
-
Ser
GGA
[ENA]
¡û
>W131229841
AUHC01000002
Alphaproteobacteria
Erythrobacter cryptus DSM 12079 [AUHC]
376074
376164
+
Ser
GGA
[ENA]
¡û
>W1711766316
MUYH01000001
Alphaproteobacteria
Erythrobacter sanguineus [MUYH]
26554
26644
+
Ser
GGA
[ENA]
¡û
>W1711766443
MUYJ01000015
Alphaproteobacteria
Erythrobacter tepidarius [MUYJ]
2644
2554
-
Ser
GGA
[ENA]
¡û
>C171049949
CP016460
Alphaproteobacteria
Blastomonas sp. RAC04 [CP016460]
306567
306477
-
Ser
GGA
-
¡û
>C009139
CP000157
Alphaproteobacteria
Erythrobacter litoralis HTCC2594 [CP000157]
1921567
1921477
-
Ser
GGA
[Ensembl]
¡û
>WENV180075802
MPMA02235835
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
109
19
-
Ser
GGA
[ENA]
¡û
>WENV180079660
MPMB02175226
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
402
312
-
Ser
GGA
[ENA]
¡û
>WENV181227048
OFDN01001239
[OFDN] hot springs metagenome; Water
14868
14958
+
Ser
GGA
[ENA]
¡û
>WENV181234680
OFEU01001382
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
101
11
-
Ser
GGA
[ENA]
¡û
>WENV182546188
OJBO01002070
[OJBO] seawater metagenome; Sea water
574
484
-
Ser
GGA
[ENA]
¡û
>WENV182547890
OJBU01001210
[OJBU] seawater metagenome; Sea water
3902
3992
+
Ser
GGA
[ENA]
¡û
>WENV182549239
OJBY01000029
[OJBY] seawater metagenome; Sea water
67420
67510
+
Ser
GGA
[ENA]
¡û
>WENV182549578
OJBY01002533
[OJBY] seawater metagenome; Sea water
4551
4641
+
Ser
GGA
[ENA]
¡û
>WENV182563791
OJED01000057
[OJED] seawater metagenome; Sea water
7446
7356
-
Ser
GGA
[ENA]
¡û
>WENV183727950
PJTP01009061
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
776
686
-
Ser
GGA
[ENA]
¡û
>WENV183729038
PJTQ01002943
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
2402
2312
-
Ser
GGA
[ENA]
¡û
>WENV183730535
PJTS01000102
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
2554
2464
-
Ser
GGA
[ENA]
¡û
>WENV183731554
PJTT01000020
[PJTT] soil metagenome; Soil (2) enriched on wood chips
60218
60128
-
Ser
GGA
[ENA]
¡û
>WENV183731825
PJTT01000217
[PJTT] soil metagenome; Soil (2) enriched on wood chips
2554
2464
-
Ser
GGA
[ENA]
¡û
>WENV183740706
PJUF01007153
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
2347
2257
-
Ser
GGA
[ENA]
¡û
>WENV183747879
PPFU01001695
[PPFU] hypolithon metagenome; Antarctic Hypolithon
13695
13785
+
Ser
GGA
[ENA]
¡û
>WENV183748158
PPFU01016094
[PPFU] hypolithon metagenome; Antarctic Hypolithon
10326
10236
-
Ser
GGA
[ENA]
¡û
>WENV183810876
PVBE011524581
[PVBE] marine metagenome; water
1070
1160
+
Ser
GGA
[ENA]
¡û
>WENV170002668
AGTN01096161
[AGTN] bioreactor metagenome; poplar biomass
138
228
+
Ser
GGA
[ENA]
¡û
>WENV170018563
BBPD01000006
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
48722
48632
-
Ser
GGA
[ENA]
¡û
>WENV170136306
CENV01020993
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
44490
44580
+
Ser
GGA
[ENA]
¡û
>WENV170710431
LNFM01001738
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3449
3359
-
Ser
GGA
[ENA]
¡û
>C191002583
AP018498
Alphaproteobacteria
Altererythrobacter sp. B11 [AP018498]
3688547
3688457
-
Ser
GGA
-
¡û
>W09101652
AAGG01000003
Alphaproteobacteria
Erythrobacter litoralis HTCC2594 [AAGG]
323706
323796
+
Ser
GGA
[ENA]
¡û
>C191171250
CP039704
Alphaproteobacteria
Hankyongella ginsenosidimutans W1-2-3 [CP039704]
368108
368018
-
Ser
GGA
-
¡û
>W141820306
JQMU01000001
Alphaproteobacteria
Porphyrobacter sp. HL-46 [JQMU]
2168627
2168717
+
Ser
GGA
[ENA]
¡û
>W1911823495
QZVQ01000002
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
161724
161814
+
Ser
GGA
[ENA]
¡û
>W1810195459
PKRO01000010
Alphaproteobacteria
Porphyrobacter sp. TH134 [PKRO]
85268
85358
+
Ser
GGA
[ENA]
¡û
>C151079669
CP011310
Alphaproteobacteria
Aurantiacibacter atlanticus s21-N3 [CP011310]
2604552
2604462
-
Ser
GGA
[Ensembl]
¡û
>C151086188
CP011770
Alphaproteobacteria
Croceicoccus naphthovorans PQ-2 [CP011770]
824549
824639
+
Ser
GGA
[Ensembl]
¡û
>W2010459385
JAAFZT010000017
Alphaproteobacteria
Altererythrobacter sp. SALINAS58 [JAAFZT]
18336
18246
-
Ser
GGA
[ENA]
¡û
>W2010523138
JAANOZ010000012
Alphaproteobacteria
Altererythrobacter sp. YJ20 [JAANOZ]
47836
47746
-
Ser
GGA
[ENA]
¡û
>W2010641930
JABWGV010000005
Alphaproteobacteria
Altererythrobacter sp. HHU K3-1 [JABWGV]
59698
59608
-
Ser
GGA
[ENA]
¡û
>W2010668087
JACBZF010000004
Alphaproteobacteria
Novosphingobium marinum DSM 29043 [JACBZF]
10004
9914
-
Ser
GGA
[ENA]
¡û
>W2010722919
JACICF010000002
Alphaproteobacteria
Sphingomicrobium lutaoense DSM 24194 [JACICF]
389201
389111
-
Ser
GGA
[ENA]
¡û
>W2010725798
JACIEL010000008
Alphaproteobacteria
Croceicoccus naphthovorans DSM 102796 [JACIEL]
120367
120457
+
Ser
GGA
[ENA]
¡û
>W2010743416
JACJVJ010000003
Alphaproteobacteria
Parasphingopyxis sp. GrpM-11 [JACJVJ]
344540
344450
-
Ser
GGA
[ENA]
¡û
>W2011350485
QZVQ01000002
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
161724
161814
+
Ser
GGA
[ENA]
¡û
>W2011352751
RAHX01000001
Alphaproteobacteria
Erythrobacter aquimixticola JSSK-14 [RAHX]
2411905
2411995
+
Ser
GGA
[ENA]
¡û
>W2011498804
RXOL01000007
Alphaproteobacteria
Croceicoccus sp. GM-16 [RXOL]
115976
116066
+
Ser
GGA
[ENA]
¡û
>W2011549831
SDPV01000001
Alphaproteobacteria
Altererythrobacter sp. AY-3R [SDPV]
150270
150360
+
Ser
GGA
[ENA]
¡û
>W2011552201
SDSI01000001
Alphaproteobacteria
Erythrobacter sp. CFH 74456 [SDSI]
119822
119912
+
Ser
GGA
[ENA]
¡û
>W2011612898
SJSR01000001
Alphaproteobacteria
Erythrobacteraceae bacterium CFH 75059 [SJSR]
119822
119912
+
Ser
GGA
[ENA]
¡û
>W2011617106
SKCJ01000002
Alphaproteobacteria
Altererythrobacter lutipelagi GH1-16 [SKCJ]
256312
256402
+
Ser
GGA
[ENA]
¡û
>W2011970577
VCAO01000006
Alphaproteobacteria
Erythrobacter sp. KEM-5 [VCAO]
9622
9532
-
Ser
GGA
[ENA]
¡û
>W2012426154
WRPO01000028
Alphaproteobacteria
Novosphingobium sp. M24A2M [WRPO]
39405
39495
+
Ser
GGA
[ENA]
¡û
>W2012438572
WTYA01000011
Alphaproteobacteria
Porphyrobacter algicida KEMB 9005-328 [WTYA]
70702
70792
+
Ser
GGA
[ENA]
¡û
>W2012438998
WTYJ01000004
Alphaproteobacteria
Altererythrobacter xixiisoli S36 [WTYJ]
96861
96951
+
Ser
GGA
[ENA]
¡û
>W2012439102
WTYM01000022
Alphaproteobacteria
Altererythrobacter salegens MCCC 1K01500 [WTYM]
9183
9093
-
Ser
GGA
[ENA]
¡û
>W2012439648
WTYY01000001
Alphaproteobacteria
Altererythrobacter aestuarii JCM 16339 [WTYY]
496076
496166
+
Ser
GGA
[ENA]
¡û
>W2110030294
BMLK01000028
Alphaproteobacteria
Novosphingobium indicum CGMCC 1.6784 [BMLK]
37860
37950
+
Ser
GGA
[ENA]
¡û
>W2110284319
JACXLC010000001
Alphaproteobacteria
Erythrobacter sp. KMU-140 [JACXLC]
314125
314215
+
Ser
GGA
[ENA]
¡û
>W2110456265
JAEVFE010000017
Alphaproteobacteria
Altererythrobacter sp. C41 [JAEVFE]
5621
5531
-
Ser
GGA
[ENA]
¡û
>W2110600289
JAHFVK010000003
Alphaproteobacteria
Croceibacterium sp. LX-88 [JAHFVK]
7838
7748
-
Ser
GGA
[ENA]
¡û
>W2110650674
JAHVAH010000001
Alphaproteobacteria
Sphingomicrobium sp. B8 [JAHVAH]
112868
112958
+
Ser
GGA
[ENA]
¡û
>C211235829
CP067087
Alphaproteobacteria
Croceicoccus sp. YJ47 [CP067087]
246266
246176
-
Ser
GGA
-
¡û
>C231161305
CP078091
Alphaproteobacteria
Porphyrobacter sp. ULC335 [CP078091]
1470228
1470318
+
Ser
GGA
-
¡û
>C231401989
CP098453
Alphaproteobacteria
Pelagerythrobacter marinus E6 [CP098453]
1896936
1896846
-
Ser
GGA
-
¡û
>C231555508
CP114054
Alphaproteobacteria
Aurantiacibacter sp. MUD11 [CP114054]
2493044
2493134
+
Ser
GGA
-
¡û
>C241286721
CP129107
Alphaproteobacteria
Alteriqipengyuania flavescens [CP129107]
1718136
1718226
+
Ser
GGA
-
¡û
>C241360407
CP141285
Alphaproteobacteria
Altererythrobacter sp. H2 [CP141285]
2709634
2709544
-
Ser
GGA
-
¡û
>W1511398036
JTDI01000006
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
255824
255734
-
Ser
GGA
[ENA]
¡û
>W1511398364
JTDN01000001
Alphaproteobacteria
Croceibacterium mercuriale Coronado [JTDN]
537062
536972
-
Ser
GGA
[ENA]
¡û
>W1511590535
LBHB01000002
Alphaproteobacteria
Aurantiacibacter luteus KA37 [LBHB]
1063548
1063638
+
Ser
GGA
[ENA]
¡û
>W1511591749
LBHU01000004
Alphaproteobacteria
Aurantiacibacter marinus HWDM-33 [LBHU]
206143
206053
-
Ser
GGA
[ENA]
¡û
>W1511629902
LDCP01000004
Alphaproteobacteria
Aurantiacibacter marinus KCTC 23554 [LDCP]
206598
206508
-
Ser
GGA
[ENA]
¡û
>C161098704
CP016545
Alphaproteobacteria
Paraurantiacibacter namhicola JCM 16345 [CP016545]
1034418
1034508
+
Ser
GGA
[Ensembl]
¡û
>W1610648946
LJHP01000006
Alphaproteobacteria
Blastomonas sp. AAP25 [LJHP]
77760
77850
+
Ser
GGA
[ENA]
¡û
>W1610649195
LJHV01000001
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
38953
38863
-
Ser
GGA
[ENA]
¡û
>W1610728590
LMHH01000004
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
67501
67411
-
Ser
GGA
[ENA]
¡û
>W1610753080
LNED01000032
Alphaproteobacteria
Sphingomonadales bacterium Ga0077531 [LNED]
44861
44950
+
Ser
GGA
[ENA]
¡û
>W1610784447
LOET01000127
Alphaproteobacteria
Sphingomonadales bacterium BRH_c3 [LOET]
10116
10206
+
Ser
GGA
[ENA]
¡û
>W1610784557
LOEX01000051
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
11497
11407
-
Ser
GGA
[ENA]
¡û
>W1610892842
LRSE01000012
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
19073
18983
-
Ser
GGA
[ENA]
¡û
>W1610913258
LSJB01000318
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
42214
42124
-
Ser
GGA
[ENA]
¡û
>W1610913643
LSJK01000292
Alphaproteobacteria
Erythrobacter donghaensis [LSJK]
14084
14174
+
Ser
GGA
[ENA]
¡û
>W1610913872
LSJQ01000466
Alphaproteobacteria
Erythrobacter donghaensis [LSJQ]
11220
11130
-
Ser
GGA
[ENA]
¡û
>W1610914242
LSJZ01000139
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
8494
8584
+
Ser
GGA
[ENA]
¡û
>W1610914851
LSKM01000206
Alphaproteobacteria
Erythrobacter donghaensis [LSKM]
42412
42322
-
Ser
GGA
[ENA]
¡û
>W1611004979
LXQM01000013
Alphaproteobacteria
Croceibacterium salegens XY-R17 [LXQM]
69712
69802
+
Ser
GGA
[ENA]
¡û
>W1710593215
FRDF01000007
Alphaproteobacteria
Erythrobacter sanguineus [FRDF]
25078
25168
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK