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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45268 (43 seq.)
>A171000397
CP001338
Euryarchaeota
Methanosphaerula palustris E1-9c [CP001338]
2830661
2830747
+
Ser
CGA
-
¡û
>A171007220
HE964772
Euryarchaeota
Methanoculleus bourgensis MS2 MS2T [HE964772]
137715
137629
-
Ser
CGA
-
¡û
>A171007576
LT158599
Euryarchaeota
Methanoculleus bourgensis [LT158599]
141088
141002
-
Ser
CGA
-
¡û
>A171007645
LT549891
Euryarchaeota
Methanoculleus bourgensis [LT549891]
187294
187208
-
Ser
CGA
-
¡û
>WENV180094502
MTBK01011356
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
590
676
+
Ser
CGA
[ENA]
¢þ
>WENV180095185
MTBK01054480
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
886
972
+
Ser
CGA
[ENA]
¢þ
>WENV180096492
MTBK01132258
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
7315
7229
-
Ser
CGA
[ENA]
¢þ
>WENV180097289
MTBK01178992
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
31181
31267
+
Ser
CGA
[ENA]
¢þ
>WENV180098561
MTBK01254050
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
8465
8379
-
Ser
CGA
[ENA]
¢þ
>WENV181230470
OFEK01001109
[OFEK] activated sludge metagenome; Anaerobic digester
12147
12061
-
Ser
CGA
[ENA]
¢þ
>WENV181230486
OFEK01001148
[OFEK] activated sludge metagenome; Anaerobic digester
6
92
+
Ser
CGA
[ENA]
¢þ
>WENV181230848
OFEK01004227
[OFEK] activated sludge metagenome; Anaerobic digester
3509
3595
+
Ser
CGA
[ENA]
¢þ
>WENV181231264
OFEK01016522
[OFEK] activated sludge metagenome; Anaerobic digester
2134
2046
-
Ser
CGA
[ENA]
¢þ
>At1271
CP000562
Euryarchaeota
Methanoculleus marisnigri JR1 [CP000562]
248553
248469
-
Ser
CGA
[Ensembl]
¡û
>WENV170562335
CZCB01002232
[CZCB] anaerobic digester metagenome; anaerobic digester
45655
45569
-
Ser
CGA
[ENA]
¢þ
>WENV170562771
CZCB01005307
[CZCB] anaerobic digester metagenome; anaerobic digester
10069
10155
+
Ser
CGA
[ENA]
¢þ
>WENV170669167
LAHR01023434
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
348
434
+
Ser
CGA
[ENA]
¢þ
>WENV170677662
LDZT01007875
[LDZT] terrestrial metagenome; oil reservoir sample SB1
25
111
+
Ser
CGA
[ENA]
¢þ
>WENV170678694
LDZU01003913
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1933
2019
+
Ser
CGA
[ENA]
¢þ
>WENV170688623
LFRM01253971
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
77477
77563
+
Ser
CGA
[ENA]
¢þ
>WENV170688890
LFRM01266632
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
11796
11882
+
Ser
CGA
[ENA]
¢þ
>WENV170715294
LNQE01001339
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
1861
1946
+
Ser
CGA
[ENA]
¢þ
>WENV170716607
LSQX01005169
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
15861
15775
-
Ser
CGA
[ENA]
¢þ
>WENV170718700
LSQX01087281
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
727
812
+
Ser
CGA
[ENA]
¢þ
>WENV170723000
LSQX01250951
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
978
1064
+
Ser
CGA
[ENA]
¢þ
>WENV170724321
LSQX01300829
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
101
186
+
Ser
CGA
[ENA]
¢þ
>WENV170724468
LSQX01306467
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
92
178
+
Ser
CGA
[ENA]
¢þ
>WENV170724893
LSQX01322447
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2508
2423
-
Ser
CGA
[ENA]
¢þ
>WENV170725595
LSQX01348856
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1475
1561
+
Ser
CGA
[ENA]
¢þ
>WENV170967828
MTKW01003731
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
785
699
-
Ser
CGA
[ENA]
¢þ
>W1910211676
FMID01000029
Euryarchaeota
Methanoculleus chikugoensis [FMID]
483
395
-
Ser
CGA
[ENA]
¡û
>W1910226980
FNFT01000009
Euryarchaeota
Methanoculleus thermophilus DSM 2373 [FNFT]
19933
19847
-
Ser
CGA
[ENA]
¡û
>W1910572509
JMIO01000013
Euryarchaeota
Methanoculleus sp. MH98A [JMIO]
23849
23935
+
Ser
CGA
[ENA]
¡û
>W1910583805
JXOJ01000001
Euryarchaeota
Methanoculleus sediminis S3Fa [JXOJ]
71148
71062
-
Ser
CGA
[ENA]
¡û
>W1910783524
MPOY01000163
Euryarchaeota
Methanoculleus sp. EBM-46 [MPOY]
2886
2799
-
Ser
CGA
[ENA]
¡û
>W1610000263
AASI01000002
Euryarchaeota
Methanoculleus marisnigri JR1 [AASI]
6709
6623
-
Ser
CGA
[ENA]
¡û
>W1610001005
ABZB01000003
Euryarchaeota
Methanosphaerula palustris palustris E1-9c [ABZB]
69163
69249
+
Ser
CGA
[ENA]
¡û
>W1610063043
BCNX01000012
Euryarchaeota
Methanoculleus thermophilus CR-1 [BCNX]
73493
73579
+
Ser
CGA
[ENA]
¡û
>W1610063090
BCNY01000015
Euryarchaeota
Methanoculleus horonobensis T10 [BCNY]
579046
578957
-
Ser
CGA
[ENA]
¡û
>W1610605024
LFRN01000178
Euryarchaeota
Candidatus Methanoculleus thermohydrogenotrophicum DTU006 [LFRN]
77477
77563
+
Ser
CGA
[ENA]
¡û
>W1610605065
LFRO01000068
Euryarchaeota
Methanoculleus sp. DTU007 [LFRO]
11796
11882
+
Ser
CGA
[ENA]
¡û
>W1610614431
LGHE01000321
Euryarchaeota
Methanoculleus marisnigri [LGHE]
1933
2019
+
Ser
CGA
[ENA]
¡û
>W1610946070
LUYK01000007
Euryarchaeota
Methanomicrobiales archaeon Methan_07 [LUYK]
3144
3057
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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