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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001809)
Anticodon = CGA
HIT:
25 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.2985 (1 seq.)
>SRA1033159
SRR035088.186546
454 Sequencing (SRP001809)
298
394
+
Ser
CGA
[SRA]
Identical group No.4391 (10 seq.)
>WENV170624555
FUWD013183389
[FUWD] metagenome; unknown
5623
5528
-
Ser
CGA
[ENA]
¢þ
>WENV170632844
FUWD013387975
[FUWD] metagenome; unknown
5623
5528
-
Ser
CGA
[ENA]
¢þ
>WENV170694115
LGVD01012047
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
157
62
-
Ser
CGA
[ENA]
¢þ
>WENV170695564
LGVE01121882
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
354
449
+
Ser
CGA
[ENA]
¢þ
>WENV170697924
LGVF01222883
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
304
399
+
Ser
CGA
[ENA]
¢þ
>SRA1032487
SRR035088.24006
454 Sequencing (SRP001809)
143
48
-
Ser
CGA
[SRA]
>SRA1032978
SRR035088.142468
454 Sequencing (SRP001809)
36
131
+
Ser
CGA
[SRA]
>SRA1033502
SRR035088.274810
454 Sequencing (SRP001809)
235
330
+
Ser
CGA
[SRA]
>SRA1048500
SRR035094.187787
454 Sequencing (SRP001815)
362
267
-
Ser
CGA
[SRA]
>SRA1050415
SRR035095.258119
454 Sequencing (SRP001816)
31
126
+
Ser
CGA
[SRA]
Identical group No.5212 (1 seq.)
>SRA1032511
SRR035088.33253
454 Sequencing (SRP001809)
131
226
+
Ser
CGA
[SRA]
Identical group No.7681 (1 seq.)
>SRA1034090
SRR035088.482139
454 Sequencing (SRP001809)
109
15
-
Ser
CGA
[SRA]
Identical group No.22556 (2 seq.)
>SRA1033355
SRR035088.233740
454 Sequencing (SRP001809)
178
87
-
Ser
CGA
[SRA]
>SRA1054716
SRR035099.194180
454 Sequencing (SRP001820)
14
105
+
Ser
CGA
[SRA]
Identical group No.24687 (2 seq.)
>WENV170612230
FUWD012544625
[FUWD] metagenome; unknown
12
103
+
Ser
CGA
[ENA]
¢þ
>SRA1034099
SRR035088.486072
454 Sequencing (SRP001809)
12
103
+
Ser
CGA
[SRA]
Identical group No.28071 (1 seq.)
>SRA1032575
SRR035088.51434
454 Sequencing (SRP001809)
286
195
-
Ser
CGA
[SRA]
Identical group No.28074 (1 seq.)
>SRA1033124
SRR035088.179320
454 Sequencing (SRP001809)
261
170
-
Ser
CGA
[SRA]
Identical group No.28076 (1 seq.)
>SRA1033652
SRR035088.313758
454 Sequencing (SRP001809)
271
362
+
Ser
CGA
[SRA]
Identical group No.34527 (4 seq.)
>WENV170607982
FUWD010878036
[FUWD] metagenome; unknown
279
369
+
Ser
CGA
[ENA]
¢þ
>SRA1032810
SRR035088.107625
454 Sequencing (SRP001809)
280
370
+
Ser
CGA
[SRA]
>SRA1033704
SRR035088.329930
454 Sequencing (SRP001809)
280
370
+
Ser
CGA
[SRA]
>SRA1054596
SRR035099.170194
454 Sequencing (SRP001820)
102
12
-
Ser
CGA
[SRA]
Identical group No.42647 (2 seq.)
>WENV170697474
LGVF01140470
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
648
736
+
Ser
CGA
[ENA]
¢þ
>SRA1033699
SRR035088.328797
454 Sequencing (SRP001809)
240
152
-
Ser
CGA
[SRA]
Identical group No.42649 (1 seq.)
>SRA1033825
SRR035088.367004
454 Sequencing (SRP001809)
248
336
+
Ser
CGA
[SRA]
Identical group No.42651 (1 seq.)
>SRA1034112
SRR035088.492097
454 Sequencing (SRP001809)
126
214
+
Ser
CGA
[SRA]
Identical group No.45864 (75 seq.)
>C018277
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
671308
671222
-
Ser
CGA
[Ensembl]
¡û
>WENV170613648
FUWD012815672
[FUWD] metagenome; unknown
954
867
-
Ser
CGA
[ENA]
¢þ
>WENV170614861
FUWD012843185
[FUWD] metagenome; unknown
231
142
-
Ser
CGA
[ENA]
¢þ
>W09103339
AAJD01000001
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
290114
290027
-
Ser
CGA
[ENA]
¡û
>SRA1018617
SRR035082.323272
454 Sequencing (SRP001803)
186
99
-
Ser
CGA
[SRA]
>SRA1020168
SRR035083.65597
454 Sequencing (SRP001804)
187
100
-
Ser
CGA
[SRA]
>SRA1020211
SRR035083.74874
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1020328
SRR035083.97491
454 Sequencing (SRP001804)
248
161
-
Ser
CGA
[SRA]
>SRA1020355
SRR035083.101244
454 Sequencing (SRP001804)
383
470
+
Ser
CGA
[SRA]
>SRA1020453
SRR035083.117886
454 Sequencing (SRP001804)
248
161
-
Ser
CGA
[SRA]
>SRA1020631
SRR035083.143169
454 Sequencing (SRP001804)
170
257
+
Ser
CGA
[SRA]
>SRA1020850
SRR035083.172977
454 Sequencing (SRP001804)
247
160
-
Ser
CGA
[SRA]
>SRA1020910
SRR035083.183777
454 Sequencing (SRP001804)
175
88
-
Ser
CGA
[SRA]
>SRA1021268
SRR035083.233721
454 Sequencing (SRP001804)
142
55
-
Ser
CGA
[SRA]
>SRA1021296
SRR035083.238462
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1021486
SRR035083.264975
454 Sequencing (SRP001804)
76
163
+
Ser
CGA
[SRA]
>SRA1021528
SRR035083.269768
454 Sequencing (SRP001804)
227
140
-
Ser
CGA
[SRA]
>SRA1021573
SRR035083.274911
454 Sequencing (SRP001804)
153
66
-
Ser
CGA
[SRA]
>SRA1021674
SRR035083.291168
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1021725
SRR035083.297770
454 Sequencing (SRP001804)
137
224
+
Ser
CGA
[SRA]
>SRA1021782
SRR035083.307980
454 Sequencing (SRP001804)
170
257
+
Ser
CGA
[SRA]
>SRA1021838
SRR035083.315367
454 Sequencing (SRP001804)
182
269
+
Ser
CGA
[SRA]
>SRA1021845
SRR035083.316909
454 Sequencing (SRP001804)
260
173
-
Ser
CGA
[SRA]
>SRA1021895
SRR035083.326032
454 Sequencing (SRP001804)
255
168
-
Ser
CGA
[SRA]
>SRA1021965
SRR035083.332538
454 Sequencing (SRP001804)
136
223
+
Ser
CGA
[SRA]
>SRA1022018
SRR035083.339812
454 Sequencing (SRP001804)
289
376
+
Ser
CGA
[SRA]
>SRA1022096
SRR035083.353177
454 Sequencing (SRP001804)
188
101
-
Ser
CGA
[SRA]
>SRA1022128
SRR035083.356460
454 Sequencing (SRP001804)
136
223
+
Ser
CGA
[SRA]
>SRA1022192
SRR035083.366402
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1022313
SRR035083.387122
454 Sequencing (SRP001804)
231
318
+
Ser
CGA
[SRA]
>SRA1022319
SRR035083.388543
454 Sequencing (SRP001804)
164
77
-
Ser
CGA
[SRA]
>SRA1022409
SRR035083.401887
454 Sequencing (SRP001804)
115
28
-
Ser
CGA
[SRA]
>SRA1022465
SRR035083.409044
454 Sequencing (SRP001804)
177
264
+
Ser
CGA
[SRA]
>SRA1022472
SRR035083.410561
454 Sequencing (SRP001804)
136
223
+
Ser
CGA
[SRA]
>SRA1022633
SRR035083.435416
454 Sequencing (SRP001804)
153
66
-
Ser
CGA
[SRA]
>SRA1022755
SRR035083.454326
454 Sequencing (SRP001804)
170
257
+
Ser
CGA
[SRA]
>SRA1023001
SRR035083.503100
454 Sequencing (SRP001804)
17
104
+
Ser
CGA
[SRA]
>SRA1032010
SRR035087.530095
454 Sequencing (SRP001808)
174
261
+
Ser
CGA
[SRA]
>SRA1032712
SRR035088.85422
454 Sequencing (SRP001809)
71
158
+
Ser
CGA
[SRA]
>SRA1033197
SRR035088.194694
454 Sequencing (SRP001809)
133
46
-
Ser
CGA
[SRA]
>SRA1033810
SRR035088.361644
454 Sequencing (SRP001809)
208
121
-
Ser
CGA
[SRA]
>SRA1034800
SRR035089.175675
454 Sequencing (SRP001810)
227
140
-
Ser
CGA
[SRA]
>SRA1035155
SRR035089.248820
454 Sequencing (SRP001810)
158
71
-
Ser
CGA
[SRA]
>SRA1035653
SRR035089.349665
454 Sequencing (SRP001810)
227
140
-
Ser
CGA
[SRA]
>SRA1035833
SRR035089.384809
454 Sequencing (SRP001810)
247
160
-
Ser
CGA
[SRA]
>SRA1036925
SRR035090.39658
454 Sequencing (SRP001811)
143
56
-
Ser
CGA
[SRA]
>SRA1036980
SRR035090.51463
454 Sequencing (SRP001811)
127
40
-
Ser
CGA
[SRA]
>SRA1037194
SRR035090.91293
454 Sequencing (SRP001811)
270
183
-
Ser
CGA
[SRA]
>SRA1037683
SRR035090.173884
454 Sequencing (SRP001811)
97
10
-
Ser
CGA
[SRA]
>SRA1037756
SRR035090.189246
454 Sequencing (SRP001811)
212
125
-
Ser
CGA
[SRA]
>SRA1038174
SRR035090.258309
454 Sequencing (SRP001811)
279
366
+
Ser
CGA
[SRA]
>SRA1038211
SRR035090.265595
454 Sequencing (SRP001811)
246
159
-
Ser
CGA
[SRA]
>SRA1038215
SRR035090.266359
454 Sequencing (SRP001811)
221
308
+
Ser
CGA
[SRA]
>SRA1038358
SRR035090.291392
454 Sequencing (SRP001811)
246
159
-
Ser
CGA
[SRA]
>SRA1038429
SRR035090.302940
454 Sequencing (SRP001811)
197
110
-
Ser
CGA
[SRA]
>SRA1038468
SRR035090.311214
454 Sequencing (SRP001811)
171
84
-
Ser
CGA
[SRA]
>SRA1038622
SRR035090.338693
454 Sequencing (SRP001811)
183
96
-
Ser
CGA
[SRA]
>SRA1038750
SRR035090.359715
454 Sequencing (SRP001811)
269
182
-
Ser
CGA
[SRA]
>SRA1039088
SRR035090.422553
454 Sequencing (SRP001811)
144
231
+
Ser
CGA
[SRA]
>SRA1039140
SRR035090.431249
454 Sequencing (SRP001811)
118
205
+
Ser
CGA
[SRA]
>SRA1039219
SRR035090.446466
454 Sequencing (SRP001811)
132
45
-
Ser
CGA
[SRA]
>SRA1039271
SRR035090.455240
454 Sequencing (SRP001811)
279
192
-
Ser
CGA
[SRA]
>SRA1039288
SRR035090.459082
454 Sequencing (SRP001811)
190
103
-
Ser
CGA
[SRA]
>SRA1039571
SRR035090.518294
454 Sequencing (SRP001811)
249
162
-
Ser
CGA
[SRA]
>SRA1039704
SRR035090.549321
454 Sequencing (SRP001811)
169
256
+
Ser
CGA
[SRA]
>SRA1042854
SRR035091.456188
454 Sequencing (SRP001812)
201
114
-
Ser
CGA
[SRA]
>SRA1046763
SRR035093.378306
454 Sequencing (SRP001814)
71
158
+
Ser
CGA
[SRA]
>SRA1051704
SRR035098.61345
454 Sequencing (SRP001819)
280
193
-
Ser
CGA
[SRA]
>SRA1052244
SRR035098.166566
454 Sequencing (SRP001819)
87
174
+
Ser
CGA
[SRA]
>SRA1053096
SRR035098.335301
454 Sequencing (SRP001819)
87
174
+
Ser
CGA
[SRA]
>SRA1054041
SRR035099.40553
454 Sequencing (SRP001820)
87
174
+
Ser
CGA
[SRA]
>SRA1054055
SRR035099.44197
454 Sequencing (SRP001820)
242
155
-
Ser
CGA
[SRA]
>SRA1054585
SRR035099.168074
454 Sequencing (SRP001820)
28
115
+
Ser
CGA
[SRA]
>SRA1054679
SRR035099.186690
454 Sequencing (SRP001820)
417
504
+
Ser
CGA
[SRA]
>SRA1054826
SRR035099.224055
454 Sequencing (SRP001820)
310
397
+
Ser
CGA
[SRA]
Identical group No.57978 (3 seq.)
>WENV170612188
FUWD012527533
[FUWD] metagenome; unknown
17
106
+
Ser
CGA
[ENA]
¢þ
>SRA1033267
SRR035088.210276
454 Sequencing (SRP001809)
17
106
+
Ser
CGA
[SRA]
>SRA1040359
SRR035091.84865
454 Sequencing (SRP001812)
152
64
-
Ser
CGA
[SRA]
Identical group No.66779 (1 seq.)
>SRA1032686
SRR035088.79795
454 Sequencing (SRP001809)
267
178
-
Ser
CGA
[SRA]
Identical group No.66781 (1 seq.)
>SRA1032913
SRR035088.128573
454 Sequencing (SRP001809)
192
281
+
Ser
CGA
[SRA]
Identical group No.66788 (1 seq.)
>SRA1033991
SRR035088.435585
454 Sequencing (SRP001809)
279
368
+
Ser
CGA
[SRA]
Identical group No.66789 (1 seq.)
>SRA1034013
SRR035088.447366
454 Sequencing (SRP001809)
114
25
-
Ser
CGA
[SRA]
Identical group No.87068 (10 seq.)
>WENV170627300
FUWD013232509
[FUWD] metagenome; unknown
5509
5422
-
Ser
CGA
[ENA]
¢þ
>SRA1030661
SRR035087.310930
454 Sequencing (SRP001808)
111
24
-
Ser
CGA
[SRA]
>SRA1034025
SRR035088.451778
454 Sequencing (SRP001809)
310
223
-
Ser
CGA
[SRA]
>SRA1035115
SRR035089.240303
454 Sequencing (SRP001810)
127
40
-
Ser
CGA
[SRA]
>SRA1040451
SRR035091.99602
454 Sequencing (SRP001812)
94
7
-
Ser
CGA
[SRA]
>SRA1041823
SRR035091.299683
454 Sequencing (SRP001812)
157
70
-
Ser
CGA
[SRA]
>SRA1042749
SRR035091.440409
454 Sequencing (SRP001812)
456
369
-
Ser
CGA
[SRA]
>SRA1043587
SRR035092.142745
454 Sequencing (SRP001813)
152
239
+
Ser
CGA
[SRA]
>SRA1043715
SRR035092.164413
454 Sequencing (SRP001813)
467
380
-
Ser
CGA
[SRA]
>SRA1049710
SRR035095.123259
454 Sequencing (SRP001816)
526
439
-
Ser
CGA
[SRA]
Identical group No.106986 (1 seq.)
>SRA1032633
SRR035088.67756
454 Sequencing (SRP001809)
152
65
-
Ser
CGA
[SRA]
Identical group No.157496 (6 seq.)
>WENV170613369
FUWD012800133
[FUWD] metagenome; unknown
148
233
+
Ser
CGA
[ENA]
¢þ
>WENV170626505
FUWD013223964
[FUWD] metagenome; unknown
267
184
-
Ser
CGA
[ENA]
¢þ
>SRA1017918
SRR035082.213887
454 Sequencing (SRP001803)
335
418
+
Ser
CGA
[SRA]
>SRA1030278
SRR035087.254876
454 Sequencing (SRP001808)
267
184
-
Ser
CGA
[SRA]
>SRA1033141
SRR035088.181650
454 Sequencing (SRP001809)
69
152
+
Ser
CGA
[SRA]
>SRA1049824
SRR035095.143692
454 Sequencing (SRP001816)
198
115
-
Ser
CGA
[SRA]
Identical group No.174269 (1 seq.)
>SRA1033147
SRR035088.183200
454 Sequencing (SRP001809)
291
373
+
Ser
CGA
[SRA]
Identical group No.222837 (6 seq.)
>WENV170608170
FUWD010898580
[FUWD] metagenome; unknown
100
184
+
Ser
CGA
[ENA]
¢þ
>SRA1032984
SRR035088.144017
454 Sequencing (SRP001809)
234
150
-
Ser
CGA
[SRA]
>SRA1041302
SRR035091.225498
454 Sequencing (SRP001812)
53
137
+
Ser
CGA
[SRA]
>SRA1043574
SRR035092.140937
454 Sequencing (SRP001813)
122
206
+
Ser
CGA
[SRA]
>SRA1049194
SRR035095.35758
454 Sequencing (SRP001816)
98
182
+
Ser
CGA
[SRA]
>SRA1049697
SRR035095.121279
454 Sequencing (SRP001816)
76
160
+
Ser
CGA
[SRA]
Identical group No.226331 (1 seq.)
>SRA1033632
SRR035088.308467
454 Sequencing (SRP001809)
239
159
-
Ser
CGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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