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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001814)
Anticodon = CGT
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453578 (126 seq.)
>WENV170614007
FUWD012823500
[FUWD] metagenome; unknown
11954
11877
-
Thr
CGT
[ENA]
¢þ
>SRA1019868
SRR035083.9283
454 Sequencing (SRP001804)
360
283
-
Thr
CGT
[SRA]
>SRA1019911
SRR035083.19687
454 Sequencing (SRP001804)
324
401
+
Thr
CGT
[SRA]
>SRA1019916
SRR035083.21121
454 Sequencing (SRP001804)
163
86
-
Thr
CGT
[SRA]
>SRA1019964
SRR035083.30966
454 Sequencing (SRP001804)
326
403
+
Thr
CGT
[SRA]
>SRA1019976
SRR035083.34629
454 Sequencing (SRP001804)
324
401
+
Thr
CGT
[SRA]
>SRA1020029
SRR035083.43997
454 Sequencing (SRP001804)
166
89
-
Thr
CGT
[SRA]
>SRA1020030
SRR035083.44156
454 Sequencing (SRP001804)
363
286
-
Thr
CGT
[SRA]
>SRA1020050
SRR035083.48593
454 Sequencing (SRP001804)
158
81
-
Thr
CGT
[SRA]
>SRA1020058
SRR035083.51602
454 Sequencing (SRP001804)
329
406
+
Thr
CGT
[SRA]
>SRA1020083
SRR035083.55634
454 Sequencing (SRP001804)
328
405
+
Thr
CGT
[SRA]
>SRA1020252
SRR035083.83435
454 Sequencing (SRP001804)
327
404
+
Thr
CGT
[SRA]
>SRA1020318
SRR035083.96401
454 Sequencing (SRP001804)
109
32
-
Thr
CGT
[SRA]
>SRA1020371
SRR035083.103289
454 Sequencing (SRP001804)
109
32
-
Thr
CGT
[SRA]
>SRA1020382
SRR035083.105160
454 Sequencing (SRP001804)
116
39
-
Thr
CGT
[SRA]
>SRA1020447
SRR035083.116641
454 Sequencing (SRP001804)
470
393
-
Thr
CGT
[SRA]
>SRA1020460
SRR035083.118657
454 Sequencing (SRP001804)
156
79
-
Thr
CGT
[SRA]
>SRA1020497
SRR035083.123450
454 Sequencing (SRP001804)
116
39
-
Thr
CGT
[SRA]
>SRA1020506
SRR035083.125451
454 Sequencing (SRP001804)
144
67
-
Thr
CGT
[SRA]
>SRA1020515
SRR035083.128659
454 Sequencing (SRP001804)
469
392
-
Thr
CGT
[SRA]
>SRA1020632
SRR035083.143226
454 Sequencing (SRP001804)
71
148
+
Thr
CGT
[SRA]
>SRA1020760
SRR035083.160483
454 Sequencing (SRP001804)
166
243
+
Thr
CGT
[SRA]
>SRA1020788
SRR035083.165526
454 Sequencing (SRP001804)
164
87
-
Thr
CGT
[SRA]
>SRA1020867
SRR035083.175012
454 Sequencing (SRP001804)
369
292
-
Thr
CGT
[SRA]
>SRA1020907
SRR035083.182399
454 Sequencing (SRP001804)
109
32
-
Thr
CGT
[SRA]
>SRA1021016
SRR035083.197814
454 Sequencing (SRP001804)
137
214
+
Thr
CGT
[SRA]
>SRA1021037
SRR035083.201856
454 Sequencing (SRP001804)
393
316
-
Thr
CGT
[SRA]
>SRA1021044
SRR035083.202770
454 Sequencing (SRP001804)
145
68
-
Thr
CGT
[SRA]
>SRA1021048
SRR035083.203343
454 Sequencing (SRP001804)
459
382
-
Thr
CGT
[SRA]
>SRA1021324
SRR035083.242144
454 Sequencing (SRP001804)
110
33
-
Thr
CGT
[SRA]
>SRA1021444
SRR035083.259734
454 Sequencing (SRP001804)
89
12
-
Thr
CGT
[SRA]
>SRA1021488
SRR035083.265120
454 Sequencing (SRP001804)
449
524
+
Thr
CGT
[SRA]
>SRA1021563
SRR035083.273120
454 Sequencing (SRP001804)
145
68
-
Thr
CGT
[SRA]
>SRA1021592
SRR035083.277102
454 Sequencing (SRP001804)
13
90
+
Thr
CGT
[SRA]
>SRA1021616
SRR035083.282649
454 Sequencing (SRP001804)
166
89
-
Thr
CGT
[SRA]
>SRA1021829
SRR035083.314236
454 Sequencing (SRP001804)
137
214
+
Thr
CGT
[SRA]
>SRA1021830
SRR035083.314428
454 Sequencing (SRP001804)
144
67
-
Thr
CGT
[SRA]
>SRA1021876
SRR035083.321642
454 Sequencing (SRP001804)
194
117
-
Thr
CGT
[SRA]
>SRA1022283
SRR035083.381089
454 Sequencing (SRP001804)
166
89
-
Thr
CGT
[SRA]
>SRA1022392
SRR035083.399132
454 Sequencing (SRP001804)
100
23
-
Thr
CGT
[SRA]
>SRA1022447
SRR035083.406268
454 Sequencing (SRP001804)
39
116
+
Thr
CGT
[SRA]
>SRA1022509
SRR035083.416184
454 Sequencing (SRP001804)
178
101
-
Thr
CGT
[SRA]
>SRA1022533
SRR035083.421788
454 Sequencing (SRP001804)
291
366
+
Thr
CGT
[SRA]
>SRA1022565
SRR035083.424736
454 Sequencing (SRP001804)
212
135
-
Thr
CGT
[SRA]
>SRA1022592
SRR035083.430160
454 Sequencing (SRP001804)
144
67
-
Thr
CGT
[SRA]
>SRA1022630
SRR035083.435056
454 Sequencing (SRP001804)
119
42
-
Thr
CGT
[SRA]
>SRA1022639
SRR035083.436243
454 Sequencing (SRP001804)
145
68
-
Thr
CGT
[SRA]
>SRA1022670
SRR035083.439881
454 Sequencing (SRP001804)
106
29
-
Thr
CGT
[SRA]
>SRA1022715
SRR035083.446378
454 Sequencing (SRP001804)
155
78
-
Thr
CGT
[SRA]
>SRA1022733
SRR035083.450406
454 Sequencing (SRP001804)
41
118
+
Thr
CGT
[SRA]
>SRA1022841
SRR035083.470942
454 Sequencing (SRP001804)
166
89
-
Thr
CGT
[SRA]
>SRA1022866
SRR035083.475830
454 Sequencing (SRP001804)
106
29
-
Thr
CGT
[SRA]
>SRA1022911
SRR035083.485006
454 Sequencing (SRP001804)
40
117
+
Thr
CGT
[SRA]
>SRA1022921
SRR035083.486786
454 Sequencing (SRP001804)
166
89
-
Thr
CGT
[SRA]
>SRA1023031
SRR035083.507928
454 Sequencing (SRP001804)
99
176
+
Thr
CGT
[SRA]
>SRA1023058
SRR035083.513277
454 Sequencing (SRP001804)
150
73
-
Thr
CGT
[SRA]
>SRA1030102
SRR035087.227620
454 Sequencing (SRP001808)
260
336
+
Thr
CGT
[SRA]
>SRA1032223
SRR035087.580672
454 Sequencing (SRP001808)
105
182
+
Thr
CGT
[SRA]
>SRA1032741
SRR035088.92517
454 Sequencing (SRP001809)
6
83
+
Thr
CGT
[SRA]
>SRA1032779
SRR035088.102269
454 Sequencing (SRP001809)
389
312
-
Thr
CGT
[SRA]
>SRA1033254
SRR035088.207893
454 Sequencing (SRP001809)
241
164
-
Thr
CGT
[SRA]
>SRA1033798
SRR035088.358674
454 Sequencing (SRP001809)
184
107
-
Thr
CGT
[SRA]
>SRA1034137
SRR035088.505202
454 Sequencing (SRP001809)
121
198
+
Thr
CGT
[SRA]
>SRA1034734
SRR035089.162846
454 Sequencing (SRP001810)
36
113
+
Thr
CGT
[SRA]
>SRA1034824
SRR035089.180735
454 Sequencing (SRP001810)
294
371
+
Thr
CGT
[SRA]
>SRA1035342
SRR035089.286805
454 Sequencing (SRP001810)
290
213
-
Thr
CGT
[SRA]
>SRA1036849
SRR035090.24138
454 Sequencing (SRP001811)
303
226
-
Thr
CGT
[SRA]
>SRA1037036
SRR035090.62170
454 Sequencing (SRP001811)
246
169
-
Thr
CGT
[SRA]
>SRA1037096
SRR035090.72993
454 Sequencing (SRP001811)
165
88
-
Thr
CGT
[SRA]
>SRA1037175
SRR035090.87768
454 Sequencing (SRP001811)
316
239
-
Thr
CGT
[SRA]
>SRA1037445
SRR035090.136356
454 Sequencing (SRP001811)
203
280
+
Thr
CGT
[SRA]
>SRA1037564
SRR035090.155365
454 Sequencing (SRP001811)
202
279
+
Thr
CGT
[SRA]
>SRA1037606
SRR035090.162425
454 Sequencing (SRP001811)
380
456
+
Thr
CGT
[SRA]
>SRA1037660
SRR035090.171085
454 Sequencing (SRP001811)
379
302
-
Thr
CGT
[SRA]
>SRA1037818
SRR035090.201238
454 Sequencing (SRP001811)
107
30
-
Thr
CGT
[SRA]
>SRA1037867
SRR035090.208273
454 Sequencing (SRP001811)
198
121
-
Thr
CGT
[SRA]
>SRA1037968
SRR035090.227577
454 Sequencing (SRP001811)
191
114
-
Thr
CGT
[SRA]
>SRA1037998
SRR035090.231571
454 Sequencing (SRP001811)
246
169
-
Thr
CGT
[SRA]
>SRA1038000
SRR035090.232052
454 Sequencing (SRP001811)
136
59
-
Thr
CGT
[SRA]
>SRA1038099
SRR035090.245151
454 Sequencing (SRP001811)
204
127
-
Thr
CGT
[SRA]
>SRA1038136
SRR035090.252560
454 Sequencing (SRP001811)
349
272
-
Thr
CGT
[SRA]
>SRA1038160
SRR035090.255847
454 Sequencing (SRP001811)
272
195
-
Thr
CGT
[SRA]
>SRA1038212
SRR035090.265909
454 Sequencing (SRP001811)
205
282
+
Thr
CGT
[SRA]
>SRA1038285
SRR035090.280070
454 Sequencing (SRP001811)
215
292
+
Thr
CGT
[SRA]
>SRA1038286
SRR035090.280123
454 Sequencing (SRP001811)
201
278
+
Thr
CGT
[SRA]
>SRA1038307
SRR035090.284696
454 Sequencing (SRP001811)
136
59
-
Thr
CGT
[SRA]
>SRA1038310
SRR035090.285262
454 Sequencing (SRP001811)
235
312
+
Thr
CGT
[SRA]
>SRA1038327
SRR035090.288378
454 Sequencing (SRP001811)
240
317
+
Thr
CGT
[SRA]
>SRA1038414
SRR035090.299921
454 Sequencing (SRP001811)
271
194
-
Thr
CGT
[SRA]
>SRA1038448
SRR035090.306885
454 Sequencing (SRP001811)
136
59
-
Thr
CGT
[SRA]
>SRA1038658
SRR035090.345597
454 Sequencing (SRP001811)
171
94
-
Thr
CGT
[SRA]
>SRA1038676
SRR035090.348213
454 Sequencing (SRP001811)
379
302
-
Thr
CGT
[SRA]
>SRA1038713
SRR035090.353791
454 Sequencing (SRP001811)
247
170
-
Thr
CGT
[SRA]
>SRA1038759
SRR035090.360858
454 Sequencing (SRP001811)
36
113
+
Thr
CGT
[SRA]
>SRA1038790
SRR035090.366660
454 Sequencing (SRP001811)
101
178
+
Thr
CGT
[SRA]
>SRA1039039
SRR035090.413209
454 Sequencing (SRP001811)
113
36
-
Thr
CGT
[SRA]
>SRA1039117
SRR035090.428552
454 Sequencing (SRP001811)
84
7
-
Thr
CGT
[SRA]
>SRA1039141
SRR035090.431459
454 Sequencing (SRP001811)
362
285
-
Thr
CGT
[SRA]
>SRA1039247
SRR035090.451175
454 Sequencing (SRP001811)
13
90
+
Thr
CGT
[SRA]
>SRA1039348
SRR035090.473934
454 Sequencing (SRP001811)
201
124
-
Thr
CGT
[SRA]
>SRA1039350
SRR035090.474495
454 Sequencing (SRP001811)
228
151
-
Thr
CGT
[SRA]
>SRA1039408
SRR035090.485672
454 Sequencing (SRP001811)
363
286
-
Thr
CGT
[SRA]
>SRA1039454
SRR035090.495599
454 Sequencing (SRP001811)
248
325
+
Thr
CGT
[SRA]
>SRA1039464
SRR035090.497146
454 Sequencing (SRP001811)
362
285
-
Thr
CGT
[SRA]
>SRA1039476
SRR035090.499696
454 Sequencing (SRP001811)
39
116
+
Thr
CGT
[SRA]
>SRA1039495
SRR035090.503665
454 Sequencing (SRP001811)
14
91
+
Thr
CGT
[SRA]
>SRA1039514
SRR035090.507101
454 Sequencing (SRP001811)
123
200
+
Thr
CGT
[SRA]
>SRA1039587
SRR035090.520885
454 Sequencing (SRP001811)
178
101
-
Thr
CGT
[SRA]
>SRA1039609
SRR035090.528699
454 Sequencing (SRP001811)
191
114
-
Thr
CGT
[SRA]
>SRA1039743
SRR035090.556846
454 Sequencing (SRP001811)
198
121
-
Thr
CGT
[SRA]
>SRA1039807
SRR035090.574683
454 Sequencing (SRP001811)
101
24
-
Thr
CGT
[SRA]
>SRA1039910
SRR035090.599631
454 Sequencing (SRP001811)
117
40
-
Thr
CGT
[SRA]
>SRA1039944
SRR035090.610216
454 Sequencing (SRP001811)
157
80
-
Thr
CGT
[SRA]
>SRA1040448
SRR035091.98688
454 Sequencing (SRP001812)
105
28
-
Thr
CGT
[SRA]
>SRA1040909
SRR035091.167795
454 Sequencing (SRP001812)
155
78
-
Thr
CGT
[SRA]
>SRA1041620
SRR035091.270242
454 Sequencing (SRP001812)
192
269
+
Thr
CGT
[SRA]
>SRA1042030
SRR035091.329390
454 Sequencing (SRP001812)
63
140
+
Thr
CGT
[SRA]
>SRA1045381
SRR035093.81451
454 Sequencing (SRP001814)
157
234
+
Thr
CGT
[SRA]
>SRA1045415
SRR035093.90143
454 Sequencing (SRP001814)
160
83
-
Thr
CGT
[SRA]
>SRA1045550
SRR035093.120089
454 Sequencing (SRP001814)
439
362
-
Thr
CGT
[SRA]
>SRA1046745
SRR035093.374988
454 Sequencing (SRP001814)
128
204
+
Thr
CGT
[SRA]
>SRA1054058
SRR035099.44950
454 Sequencing (SRP001820)
138
61
-
Thr
CGT
[SRA]
>SRA1054173
SRR035099.75635
454 Sequencing (SRP001820)
176
99
-
Thr
CGT
[SRA]
>SRA1054417
SRR035099.129362
454 Sequencing (SRP001820)
187
110
-
Thr
CGT
[SRA]
>SRA1054496
SRR035099.146460
454 Sequencing (SRP001820)
234
157
-
Thr
CGT
[SRA]
>SRA1054641
SRR035099.181544
454 Sequencing (SRP001820)
187
264
+
Thr
CGT
[SRA]
Identical group No.471177 (49 seq.)
>WENV180650219
OCSY01000194
[OCSY] marine metagenome; 30 L Plastic container
922
995
+
Thr
CGT
[ENA]
¢þ
>WENV181322066
OFKP01002749
[OFKP] marine metagenome; sea ice
921
994
+
Thr
CGT
[ENA]
¢þ
>WENV181322662
OFKT01014520
[OFKT] marine metagenome; sea ice
7
80
+
Thr
CGT
[ENA]
¢þ
>WENV181323545
OFKY01005803
[OFKY] marine metagenome; sea ice
627
700
+
Thr
CGT
[ENA]
¢þ
>WENV181323794
OFKZ01006283
[OFKZ] marine metagenome; sea ice
459
532
+
Thr
CGT
[ENA]
¢þ
>WENV181324198
OFLC01005521
[OFLC] marine metagenome; melt pond
116
189
+
Thr
CGT
[ENA]
¢þ
>WENV181324434
OFLE01010223
[OFLE] marine metagenome; sea ice
411
338
-
Thr
CGT
[ENA]
¢þ
>WENV181324547
OFLF01001386
[OFLF] marine metagenome; melt pond
641
714
+
Thr
CGT
[ENA]
¢þ
>WENV181324815
OFLH01010551
[OFLH] marine metagenome; sea ice
528
455
-
Thr
CGT
[ENA]
¢þ
>WENV181325130
OFLI01008829
[OFLI] seawater metagenome; seawater
412
485
+
Thr
CGT
[ENA]
¢þ
>WENV181325562
OFLJ01005256
[OFLJ] seawater metagenome; seawater
272
345
+
Thr
CGT
[ENA]
¢þ
>WENV181391131
OFRQ01042626
[OFRQ] seawater metagenome; seawater
292
219
-
Thr
CGT
[ENA]
¢þ
>WENV181391431
OFRT01006531
[OFRT] seawater metagenome; seawater
487
560
+
Thr
CGT
[ENA]
¢þ
>WENV181392792
OFRX01005790
[OFRX] seawater metagenome; seawater
517
444
-
Thr
CGT
[ENA]
¢þ
>WENV183615761
OOEB01134425
[OOEB] marine metagenome; sea ice
156
83
-
Thr
CGT
[ENA]
¢þ
>WENV183618094
OOFL01021460
[OOFL] marine metagenome; seawater
277
204
-
Thr
CGT
[ENA]
¢þ
>WENV183618575
OOFO01008888
[OOFO] marine metagenome; seawater
488
415
-
Thr
CGT
[ENA]
¢þ
>WENV183618940
OOFP01005507
[OOFP] marine metagenome; seawater
487
560
+
Thr
CGT
[ENA]
¢þ
>WENV183619428
OOFQ01005283
[OOFQ] marine metagenome; seawater
272
345
+
Thr
CGT
[ENA]
¢þ
>WENV183620043
OOFR01003098
[OOFR] marine metagenome; seawater
628
555
-
Thr
CGT
[ENA]
¢þ
>WENV183620900
OOFT01000013
[OOFT] marine metagenome; sea ice
32186
32259
+
Thr
CGT
[ENA]
¢þ
>WENV183623683
OOGA01035665
[OOGA] marine metagenome; sea ice
581
654
+
Thr
CGT
[ENA]
¢þ
>WENV183625348
OOGF01015393
[OOGF] marine metagenome; seawater
222
295
+
Thr
CGT
[ENA]
¢þ
>WENV183626106
OOGH01013908
[OOGH] marine metagenome; seawater
301
374
+
Thr
CGT
[ENA]
¢þ
>WENV183628318
OOGN01009201
[OOGN] marine metagenome; sea ice
257
330
+
Thr
CGT
[ENA]
¢þ
>WENV183628878
OOGO01049244
[OOGO] marine metagenome; sea ice
196
123
-
Thr
CGT
[ENA]
¢þ
>WENV183629152
OOGP01005701
[OOGP] marine metagenome; seawater
517
444
-
Thr
CGT
[ENA]
¢þ
>WENV170567892
FLMP01008812
[FLMP] seawater metagenome; seawater
1462
1389
-
Thr
CGT
[ENA]
¢þ
>WENV170627053
FUWD013230979
[FUWD] metagenome; unknown
10162
10235
+
Thr
CGT
[ENA]
¢þ
>WENV170627153
FUWD013231702
[FUWD] metagenome; unknown
1772
1699
-
Thr
CGT
[ENA]
¢þ
>WENV170627551
FUWD013233389
[FUWD] metagenome; unknown
10162
10235
+
Thr
CGT
[ENA]
¢þ
>WENV170632082
FUWD013378096
[FUWD] metagenome; unknown
1772
1699
-
Thr
CGT
[ENA]
¢þ
>WENV170950913
MEHZ011526806
[MEHZ] marine metagenome; marine surface water
908
981
+
Thr
CGT
[ENA]
¢þ
>SRA1023156
SRR035084.22579
454 Sequencing (SRP001805)
49
122
+
Thr
CGT
[SRA]
>SRA1023790
SRR035084.176086
454 Sequencing (SRP001805)
240
167
-
Thr
CGT
[SRA]
>SRA1024400
SRR035084.316539
454 Sequencing (SRP001805)
422
349
-
Thr
CGT
[SRA]
>SRA1024924
SRR035084.435642
454 Sequencing (SRP001805)
167
94
-
Thr
CGT
[SRA]
>SRA1025061
SRR035084.473999
454 Sequencing (SRP001805)
215
142
-
Thr
CGT
[SRA]
>SRA1045286
SRR035093.57745
454 Sequencing (SRP001814)
269
196
-
Thr
CGT
[SRA]
>SRA1045401
SRR035093.85803
454 Sequencing (SRP001814)
160
87
-
Thr
CGT
[SRA]
>SRA1045646
SRR035093.140756
454 Sequencing (SRP001814)
258
331
+
Thr
CGT
[SRA]
>SRA1046255
SRR035093.262393
454 Sequencing (SRP001814)
297
370
+
Thr
CGT
[SRA]
>SRA1046516
SRR035093.322521
454 Sequencing (SRP001814)
330
403
+
Thr
CGT
[SRA]
>SRA1046608
SRR035093.343201
454 Sequencing (SRP001814)
249
176
-
Thr
CGT
[SRA]
>SRA1047082
SRR035093.452089
454 Sequencing (SRP001814)
369
442
+
Thr
CGT
[SRA]
>SRA1053354
SRR035098.389978
454 Sequencing (SRP001819)
205
132
-
Thr
CGT
[SRA]
>W121063449
AJKR01000001
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
94408
94481
+
Thr
CGT
[ENA]
¡û
>W1610625715
LIBA01000007
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
9073
9000
-
Thr
CGT
[ENA]
¡û
>W1710756842
LIBA01000007
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
9073
9000
-
Thr
CGT
[ENA]
¡û
Identical group No.474427 (82 seq.)
>WENV180114092
OAPR01148672
[OAPR] marine metagenome; seawater
356
281
-
Thr
CGT
[ENA]
¢þ
>WENV181321994
OFKO01008388
[OFKO] marine metagenome; seawater
35
110
+
Thr
CGT
[ENA]
¢þ
>WENV181393239
OFRX01083034
[OFRX] seawater metagenome; seawater
298
373
+
Thr
CGT
[ENA]
¢þ
>WENV182540385
OJAJ01000072
[OJAJ] seawater metagenome; Sea water
1691
1766
+
Thr
CGT
[ENA]
¢þ
>WENV182540805
OJAQ01000002
[OJAQ] seawater metagenome; Sea water
3228
3303
+
Thr
CGT
[ENA]
¢þ
>WENV182542739
OJAZ01001391
[OJAZ] seawater metagenome; Sea water
5491
5416
-
Thr
CGT
[ENA]
¢þ
>WENV182544240
OJBF01000058
[OJBF] seawater metagenome; Sea water
8071
7996
-
Thr
CGT
[ENA]
¢þ
>WENV182544432
OJBG01001105
[OJBG] seawater metagenome; Sea water
676
751
+
Thr
CGT
[ENA]
¢þ
>WENV182544977
OJBL01001412
[OJBL] seawater metagenome; Sea water
1110
1185
+
Thr
CGT
[ENA]
¢þ
>WENV182545763
OJBN01022568
[OJBN] seawater metagenome; Sea water
542
467
-
Thr
CGT
[ENA]
¢þ
>WENV182548472
OJBW01000416
[OJBW] seawater metagenome; Sea water
558
633
+
Thr
CGT
[ENA]
¢þ
>WENV182550118
OJBZ01003862
[OJBZ] seawater metagenome; Sea water
2776
2851
+
Thr
CGT
[ENA]
¢þ
>WENV182552640
OJCN01000439
[OJCN] seawater metagenome; Sea water
363
438
+
Thr
CGT
[ENA]
¢þ
>WENV182553187
OJCR01000340
[OJCR] seawater metagenome; Sea water
13258
13333
+
Thr
CGT
[ENA]
¢þ
>WENV182554052
OJCT01000089
[OJCT] seawater metagenome; Sea water
4840
4765
-
Thr
CGT
[ENA]
¢þ
>WENV182556513
OJDG01013715
[OJDG] seawater metagenome; Sea water
646
721
+
Thr
CGT
[ENA]
¢þ
>WENV182557167
OJDI01001767
[OJDI] seawater metagenome; Sea water
3977
3902
-
Thr
CGT
[ENA]
¢þ
>WENV182558528
OJDM01011075
[OJDM] seawater metagenome; Sea water
793
718
-
Thr
CGT
[ENA]
¢þ
>WENV182561573
OJDX01000006
[OJDX] seawater metagenome; Sea water
35482
35407
-
Thr
CGT
[ENA]
¢þ
>WENV182561910
OJDY01000006
[OJDY] seawater metagenome; Sea water
21612
21687
+
Thr
CGT
[ENA]
¢þ
>WENV182562640
OJEA01000003
[OJEA] seawater metagenome; Sea water
48968
49043
+
Thr
CGT
[ENA]
¢þ
>WENV182563035
OJEB01000006
[OJEB] seawater metagenome; Sea water
43816
43741
-
Thr
CGT
[ENA]
¢þ
>WENV182564013
OJEE01000001
[OJEE] seawater metagenome; Sea water
45749
45674
-
Thr
CGT
[ENA]
¢þ
>WENV182569227
OJEY01003037
[OJEY] seawater metagenome; Sea water
78
3
-
Thr
CGT
[ENA]
¢þ
>WENV182569703
OJFB01000050
[OJFB] seawater metagenome; Sea water
4822
4897
+
Thr
CGT
[ENA]
¢þ
>WENV182571183
OJFG01001342
[OJFG] seawater metagenome; Sea water
3285
3210
-
Thr
CGT
[ENA]
¢þ
>WENV182573740
OJFP01021078
[OJFP] seawater metagenome; Sea water
789
714
-
Thr
CGT
[ENA]
¢þ
>WENV182574522
OJFS01000004
[OJFS] seawater metagenome; Sea water
45524
45449
-
Thr
CGT
[ENA]
¢þ
>WENV182576691
OJFY01001635
[OJFY] seawater metagenome; Sea water
708
633
-
Thr
CGT
[ENA]
¢þ
>WENV182577925
OJGM01000031
[OJGM] seawater metagenome; Sea water
19323
19398
+
Thr
CGT
[ENA]
¢þ
>WENV182580617
OJGW01004956
[OJGW] seawater metagenome; Sea water
1915
1990
+
Thr
CGT
[ENA]
¢þ
>WENV182582087
OJHA01000006
[OJHA] seawater metagenome; Sea water
22853
22928
+
Thr
CGT
[ENA]
¢þ
>WENV182582407
OJHB01000049
[OJHB] seawater metagenome; Sea water
8768
8693
-
Thr
CGT
[ENA]
¢þ
>WENV182583184
OJHD01000898
[OJHD] seawater metagenome; Sea water
3598
3673
+
Thr
CGT
[ENA]
¢þ
>WENV182584684
OJHG01005276
[OJHG] seawater metagenome; Sea water
427
352
-
Thr
CGT
[ENA]
¢þ
>WENV182586732
OJHK01003934
[OJHK] seawater metagenome; Sea water
891
966
+
Thr
CGT
[ENA]
¢þ
>WENV182587537
OJHN01000009
[OJHN] seawater metagenome; Sea water
4181
4256
+
Thr
CGT
[ENA]
¢þ
>WENV182592318
OJIR01000009
[OJIR] seawater metagenome; Sea water
45835
45760
-
Thr
CGT
[ENA]
¢þ
>WENV183054499
OLGU01000003
[OLGU] seawater metagenome; Sea water
128156
128231
+
Thr
CGT
[ENA]
¢þ
>WENV183055033
OLGW01001376
[OLGW] seawater metagenome; Sea water
759
684
-
Thr
CGT
[ENA]
¢þ
>WENV183059082
OLHS01003235
[OLHS] seawater metagenome; Sea water
133
58
-
Thr
CGT
[ENA]
¢þ
>WENV183059187
OLHU01000001
[OLHU] seawater metagenome; Sea water
128358
128433
+
Thr
CGT
[ENA]
¢þ
>WENV183060190
OLHX01000047
[OLHX] seawater metagenome; Sea water
9417
9342
-
Thr
CGT
[ENA]
¢þ
>WENV183061043
OLHY01032573
[OLHY] seawater metagenome; Sea water
308
383
+
Thr
CGT
[ENA]
¢þ
>WENV183629610
OOGP01086549
[OOGP] marine metagenome; seawater
298
373
+
Thr
CGT
[ENA]
¢þ
>WENV170568196
FLMP01021615
[FLMP] seawater metagenome; seawater
1543
1618
+
Thr
CGT
[ENA]
¢þ
>WENV170600120
FUWD010108602
[FUWD] metagenome; unknown
663
590
-
Thr
CGT
[ENA]
¢þ
>WENV170616595
FUWD012893243
[FUWD] metagenome; unknown
160
85
-
Thr
CGT
[ENA]
¢þ
>WENV170619688
FUWD013019052
[FUWD] metagenome; unknown
214
139
-
Thr
CGT
[ENA]
¢þ
>WENV170620384
FUWD013030779
[FUWD] metagenome; unknown
2597
2670
+
Thr
CGT
[ENA]
¢þ
>WENV170624323
FUWD013179764
[FUWD] metagenome; unknown
1233
1308
+
Thr
CGT
[ENA]
¢þ
>WENV170624324
FUWD013179765
[FUWD] metagenome; unknown
308
383
+
Thr
CGT
[ENA]
¢þ
>WENV170624747
FUWD013186080
[FUWD] metagenome; unknown
613
538
-
Thr
CGT
[ENA]
¢þ
>WENV170626578
FUWD013225830
[FUWD] metagenome; unknown
700
775
+
Thr
CGT
[ENA]
¢þ
>WENV170627203
FUWD013232002
[FUWD] metagenome; unknown
389
464
+
Thr
CGT
[ENA]
¢þ
>WENV170627807
FUWD013237473
[FUWD] metagenome; unknown
214
139
-
Thr
CGT
[ENA]
¢þ
>WENV170629408
FUWD013269716
[FUWD] metagenome; unknown
45236
45163
-
Thr
CGT
[ENA]
¢þ
>WENV170632610
FUWD013385052
[FUWD] metagenome; unknown
308
383
+
Thr
CGT
[ENA]
¢þ
>WENV170632611
FUWD013385053
[FUWD] metagenome; unknown
389
464
+
Thr
CGT
[ENA]
¢þ
>WENV170633026
FUWD013390224
[FUWD] metagenome; unknown
613
538
-
Thr
CGT
[ENA]
¢þ
>WENV170952961
MEHZ011622507
[MEHZ] marine metagenome; marine surface water
13314
13389
+
Thr
CGT
[ENA]
¢þ
>SRA1018078
SRR035082.236652
454 Sequencing (SRP001803)
186
111
-
Thr
CGT
[SRA]
>SRA1023899
SRR035084.203679
454 Sequencing (SRP001805)
346
271
-
Thr
CGT
[SRA]
>SRA1024261
SRR035084.285256
454 Sequencing (SRP001805)
356
281
-
Thr
CGT
[SRA]
>SRA1024734
SRR035084.389800
454 Sequencing (SRP001805)
347
272
-
Thr
CGT
[SRA]
>SRA1024776
SRR035084.398663
454 Sequencing (SRP001805)
356
281
-
Thr
CGT
[SRA]
>SRA1024888
SRR035084.429326
454 Sequencing (SRP001805)
129
54
-
Thr
CGT
[SRA]
>SRA1028664
SRR035086.392260
454 Sequencing (SRP001807)
18
93
+
Thr
CGT
[SRA]
>SRA1032088
SRR035087.550399
454 Sequencing (SRP001808)
367
442
+
Thr
CGT
[SRA]
>SRA1045619
SRR035093.134641
454 Sequencing (SRP001814)
58
133
+
Thr
CGT
[SRA]
>SRA1046086
SRR035093.233281
454 Sequencing (SRP001814)
357
430
+
Thr
CGT
[SRA]
>SRA1046443
SRR035093.308006
454 Sequencing (SRP001814)
216
291
+
Thr
CGT
[SRA]
>SRA1046612
SRR035093.343929
454 Sequencing (SRP001814)
319
394
+
Thr
CGT
[SRA]
>SRA1046720
SRR035093.370225
454 Sequencing (SRP001814)
434
506
+
Thr
CGT
[SRA]
>SRA1047471
SRR035093.548495
454 Sequencing (SRP001814)
194
119
-
Thr
CGT
[SRA]
>SRA1047513
SRR035093.561931
454 Sequencing (SRP001814)
153
228
+
Thr
CGT
[SRA]
>SRA1050990
SRR035096.66993
454 Sequencing (SRP001817)
242
167
-
Thr
CGT
[SRA]
>SRA1051669
SRR035098.55362
454 Sequencing (SRP001819)
35
110
+
Thr
CGT
[SRA]
>SRA1051896
SRR035098.98595
454 Sequencing (SRP001819)
35
110
+
Thr
CGT
[SRA]
>SRA1052476
SRR035098.211159
454 Sequencing (SRP001819)
160
85
-
Thr
CGT
[SRA]
>SRA1052948
SRR035098.306072
454 Sequencing (SRP001819)
226
301
+
Thr
CGT
[SRA]
>SRA1052984
SRR035098.312837
454 Sequencing (SRP001819)
35
110
+
Thr
CGT
[SRA]
Identical group No.484646 (1 seq.)
>SRA1045890
SRR035093.190352
454 Sequencing (SRP001814)
118
43
-
Thr
CGT
[SRA]
Identical group No.484655 (2 seq.)
>WENV170607808
FUWD010857546
[FUWD] metagenome; unknown
147
72
-
Thr
CGT
[ENA]
¢þ
>SRA1046013
SRR035093.216522
454 Sequencing (SRP001814)
440
365
-
Thr
CGT
[SRA]
Identical group No.484708 (1 seq.)
>SRA1046781
SRR035093.383701
454 Sequencing (SRP001814)
336
261
-
Thr
CGT
[SRA]
Identical group No.484749 (28 seq.)
>W1710893989
LNFH01000189
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
4376
4451
+
Thr
CGT
[ENA]
¡û
>W1711073389
LSIM01000190
Alphaproteobacteria
Bradyrhizobium sp. CCH4-A6 [LSIM]
37128
37053
-
Thr
CGT
[ENA]
¡û
>W1711073432
LSIN01000236
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
90383
90458
+
Thr
CGT
[ENA]
¡û
>WENV180025753
FTIQ01019578
[FTIQ] metagenome; soil
82
7
-
Thr
CGT
[ENA]
¢þ
>WENV180027452
FTIZ01000011
[FTIZ] metagenome; soil
15732
15807
+
Thr
CGT
[ENA]
¢þ
>W141007464
AGWX01000005
Alphaproteobacteria
Afipia broomeae ATCC 49717 [AGWX]
788072
788147
+
Thr
CGT
[ENA]
¡û
>WENV180396518
OBPV01013086
[OBPV] marine metagenome; ENVO:00002010
366
441
+
Thr
CGT
[ENA]
¢þ
>WENV180397779
OBPZ01006343
[OBPZ] marine metagenome; ENVO:00002010
10
85
+
Thr
CGT
[ENA]
¢þ
>W141063413
APHQ01000016
Alphaproteobacteria
Afipia sp. OHSU_II-uncloned [APHQ]
257240
257315
+
Thr
CGT
[ENA]
¡û
>W141063713
APJE01000014
Alphaproteobacteria
Afipia sp. OHSU_I-C6 [APJE]
26001
25926
-
Thr
CGT
[ENA]
¡û
>W141063756
APJF01000006
Alphaproteobacteria
Afipia sp. OHSU_I-C4 [APJF]
26001
25926
-
Thr
CGT
[ENA]
¡û
>W141063800
APJG01000012
Alphaproteobacteria
Afipia sp. OHSU_I-uncloned [APJG]
230163
230238
+
Thr
CGT
[ENA]
¡û
>W141063845
APJH01000009
Alphaproteobacteria
Afipia sp. OHSU_II-C2 [APJH]
230159
230234
+
Thr
CGT
[ENA]
¡û
>W141063894
APJI01000010
Alphaproteobacteria
Afipia sp. OHSU_II-C1 [APJI]
230159
230234
+
Thr
CGT
[ENA]
¡û
>W141093595
AVBK01000009
Alphaproteobacteria
Afipia sp. NBIMC_P1-C1 [AVBK]
176740
176665
-
Thr
CGT
[ENA]
¡û
>W141093658
AVBL01000018
Alphaproteobacteria
Afipia sp. NBIMC_P1-C2 [AVBL]
216469
216544
+
Thr
CGT
[ENA]
¡û
>W141093708
AVBM01000021
Alphaproteobacteria
Afipia sp. NBIMC_P1-C3 [AVBM]
110172
110247
+
Thr
CGT
[ENA]
¡û
>W141243612
CAJQ02000031
Alphaproteobacteria
Afipia birgiae 34632 [CAJQ]
1270
1345
+
Thr
CGT
[ENA]
¡û
>WENV170623136
FUWD013137910
[FUWD] metagenome; unknown
1749
1674
-
Thr
CGT
[ENA]
¢þ
>WENV170630417
FUWD013307983
[FUWD] metagenome; unknown
10233
10308
+
Thr
CGT
[ENA]
¢þ
>WENV170710743
LNFM01002527
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
34239
34164
-
Thr
CGT
[ENA]
¢þ
>C181158536
CP027668
Alphaproteobacteria
Phreatobacter cathodiphilus S-12 [CP027668]
4234667
4234742
+
Thr
CGT
-
¡û
>SRA1047268
SRR035093.498335
454 Sequencing (SRP001814)
149
224
+
Thr
CGT
[SRA]
>W1511591982
LBIA01000001
Alphaproteobacteria
Afipia massiliensis LC387 [LBIA]
2436800
2436875
+
Thr
CGT
[ENA]
¡û
>W1610754255
LNFH01000189
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
4376
4451
+
Thr
CGT
[ENA]
¡û
>W1610912694
LSIM01000190
Alphaproteobacteria
Bradyrhizobium sp. CCH4-A6 [LSIM]
37128
37053
-
Thr
CGT
[ENA]
¡û
>W1610912737
LSIN01000236
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
90383
90458
+
Thr
CGT
[ENA]
¡û
>W1710567155
FOSN01000001
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
562407
562332
-
Thr
CGT
[ENA]
¡û
Identical group No.484777 (1 seq.)
>SRA1047624
SRR035093.604836
454 Sequencing (SRP001814)
101
29
-
Thr
CGT
[SRA]
Identical group No.672737 (13 seq.)
>WENV180101592
OAOV01021003
[OAOV] marine metagenome; ENVO:00002010
354
280
-
Thr
CGT
[ENA]
¢þ
>WENV183620359
OOFR01042022
[OOFR] marine metagenome; seawater
175
249
+
Thr
CGT
[ENA]
¢þ
>WENV183624035
OOGB01014639
[OOGB] marine metagenome; sea ice
419
346
-
Thr
CGT
[ENA]
¢þ
>WENV183629974
OOGR01001861
[OOGR] marine metagenome; seawater
970
896
-
Thr
CGT
[ENA]
¢þ
>WENV170571185
FLOH01000088
[FLOH] marine metagenome; water
72328
72402
+
Thr
CGT
[ENA]
¢þ
>WENV170572273
FLOH01000685
[FLOH] marine metagenome; water
14732
14806
+
Thr
CGT
[ENA]
¢þ
>WENV170572274
FLOH01000685
[FLOH] marine metagenome; water
44270
44344
+
Thr
CGT
[ENA]
¢þ
>WENV170626807
FUWD013229654
[FUWD] metagenome; unknown
15450
15524
+
Thr
CGT
[ENA]
¢þ
>WENV170627303
FUWD013232535
[FUWD] metagenome; unknown
4821
4895
+
Thr
CGT
[ENA]
¢þ
>WENV170949542
MEHZ011429950
[MEHZ] marine metagenome; marine surface water
264
190
-
Thr
CGT
[ENA]
¢þ
>WENV170950002
MEHZ011470152
[MEHZ] marine metagenome; marine surface water
3509
3435
-
Thr
CGT
[ENA]
¢þ
>SRA1025048
SRR035084.468158
454 Sequencing (SRP001805)
71
145
+
Thr
CGT
[SRA]
>SRA1046471
SRR035093.315824
454 Sequencing (SRP001814)
177
251
+
Thr
CGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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