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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TGA
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.6218 (2 seq.)
>W141262915
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
244073
243980
-
Ser
TGA
[ENA]
¡û
>WENV170008563
AOMQ01004081
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
621
714
+
Ser
TGA
[ENA]
¢þ
Identical group No.20843 (1 seq.)
>C09100392
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1033890
1033800
-
Ser
TGA
[Ensembl]
¡û
Identical group No.28418 (1 seq.)
>W131231781
AUIS01000017
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
48088
48178
+
Ser
TGA
[ENA]
¡û
Identical group No.34414 (13 seq.)
>W1711190234
LWRY01000024
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
14213
14124
-
Ser
TGA
[ENA]
¡û
>W1711190355
LWRZ01000197
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
12114
12203
+
Ser
TGA
[ENA]
¡û
>W1711190403
LWSA01000064
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
6092
6003
-
Ser
TGA
[ENA]
¡û
>W1711190532
LWSB01000100
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6124
6035
-
Ser
TGA
[ENA]
¡û
>W1711190587
LWSC01000033
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
8572
8483
-
Ser
TGA
[ENA]
¡û
>W1711190685
LWSD01000103
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
13508
13597
+
Ser
TGA
[ENA]
¡û
>W1711293209
LZYI01000220
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
29973
30062
+
Ser
TGA
[ENA]
¡û
>W1711585806
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
716024
716113
+
Ser
TGA
[ENA]
¡û
>W141206783
AZMO01000035
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
31992
32081
+
Ser
TGA
[ENA]
¡û
>C191022884
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
1404279
1404368
+
Ser
TGA
-
¡û
>W141695546
JMEB01000054
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
18373
18462
+
Ser
TGA
[ENA]
¡û
>W11168556
AFOH01000156
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
6431
6342
-
Ser
TGA
[ENA]
¡û
>W1710743681
LGYM01000020
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
286620
286531
-
Ser
TGA
[ENA]
¡û
Identical group No.34479 (2 seq.)
>CL170500013
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
2279820
2279511
-
Ser
TGA
[Ensembl]
¡û
>CL170500014
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
2125985
2125676
-
Ser
TGA
[Ensembl]
¡û
Identical group No.36113 (2 seq.)
>CL08000007
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
1746520
1746209
-
Ser
TGA
[Ensembl]
¡û
>W1910831826
MXAV01000010
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
28467
28556
+
Ser
TGA
[ENA]
¡û
Identical group No.41686 (1 seq.)
>W11300867
AEFB01001108
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
455
366
-
Ser
TGA
[ENA]
¡û
Identical group No.49444 (6 seq.)
>W1711190471
LWSA01000320
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
1693
1605
-
Ser
TGA
[ENA]
¡û
>W1711190517
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
3472
3560
+
Ser
TGA
[ENA]
¡û
>W1711190727
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
1020
1108
+
Ser
TGA
[ENA]
¡û
>W1711293136
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
13193
13105
-
Ser
TGA
[ENA]
¡û
>W141206742
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
132761
132849
+
Ser
TGA
[ENA]
¡û
>W141695571
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
20281
20193
-
Ser
TGA
[ENA]
¡û
Identical group No.63905 (3 seq.)
>W1710798660
LJTU01000005
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
25951
26038
+
Ser
TGA
[ENA]
¡û
>WENV180296930
OBJA01005631
[OBJA] soil metagenome; sediment, water from around vicinity
497
584
+
Ser
TGA
[ENA]
¢þ
>W1610662617
LJTU01000005
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
25951
26038
+
Ser
TGA
[ENA]
¡û
Identical group No.67410 (4 seq.)
>W1710798748
LJTW01000237
Gammaproteobacteria
Thiotrichales bacterium SG8_50 [LJTW]
6299
6386
+
Ser
TGA
[ENA]
¡û
>W1710799195
LJUK01000147
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
6702
6615
-
Ser
TGA
[ENA]
¡û
>W1610662705
LJTW01000237
Gammaproteobacteria
Thiotrichales bacterium SG8_50 [LJTW]
6299
6386
+
Ser
TGA
[ENA]
¡û
>W1610663152
LJUK01000147
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
6702
6615
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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