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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = CAT
HIT:
72 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261205 (1 seq.)
>W1711391191
MEKK01000183
Acidobacteriota
Acidobacteria bacterium RBG_16_68_9 [MEKK]
4737
4663
-
Met
CAT
[ENA]
¡û
Identical group No.262220 (1 seq.)
>W1810047237
OMOG01000348
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
2096
2019
-
Met
CAT
[ENA]
¡û
Identical group No.262222 (1 seq.)
>W1810047249
OMOG01000613
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
2745
2668
-
Met
CAT
[ENA]
¡û
Identical group No.264178 (2 seq.)
>W1711575240
MNHT01000114
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_10 [MNHT]
270
347
+
Met
CAT
[ENA]
¡û
>W1711576105
MNKL01000030
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_14 [MNKL]
12932
13009
+
Met
CAT
[ENA]
¡û
Identical group No.266537 (1 seq.)
>W1711574622
MNFT01000113
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_69_4 [MNFT]
6029
6106
+
Met
CAT
[ENA]
¡û
Identical group No.277163 (4 seq.)
>W1711573434
MNDD01000174
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_7 [MNDD]
880
804
-
Met
CAT
[ENA]
¡û
>W1711573469
MNDE01000191
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
64760
64684
-
Met
CAT
[ENA]
¡û
>W1711573888
MNEA01000164
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_6 [MNEA]
2506
2430
-
Met
CAT
[ENA]
¡û
>W1711574672
MNFW01000151
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_58_4 [MNFW]
6005
5929
-
Met
CAT
[ENA]
¡û
Identical group No.299359 (1 seq.)
>W1810587138
QFFY01000002
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
354859
354935
+
Met
CAT
[ENA]
¡û
Identical group No.299363 (1 seq.)
>W1810587162
QFFY01000005
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
538535
538611
+
Met
CAT
[ENA]
¡û
Identical group No.302394 (2 seq.)
>C121011817
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
4501335
4501259
-
Met
CAT
[Ensembl]
¡û
>W1710534870
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
3373530
3373606
+
Met
CAT
[ENA]
¡û
Identical group No.303078 (1 seq.)
>W1711573497
MNDG01000142
Acidobacteriota
Acidobacteriales bacterium 13_2_20CM_55_8 [MNDG]
2370
2294
-
Met
CAT
[ENA]
¡û
Identical group No.303086 (2 seq.)
>W1711574631
MNFU01000209
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_65_8 [MNFU]
3031
3107
+
Met
CAT
[ENA]
¡û
>W1711574947
MNGT01000184
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_65_5 [MNGT]
9485
9409
-
Met
CAT
[ENA]
¡û
Identical group No.320937 (2 seq.)
>W1610576100
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
1695453
1695377
-
Met
CAT
[ENA]
¡û
>W1710694364
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
1695453
1695377
-
Met
CAT
[ENA]
¡û
Identical group No.338899 (1 seq.)
>W1711575865
MNJQ01000115
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_58_11 [MNJQ]
6473
6399
-
Met
CAT
[ENA]
¡û
Identical group No.348108 (2 seq.)
>W1910697535
MEKV01000038
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
92725
92649
-
Met
CAT
[ENA]
¡û
>W1910697782
MELC01000036
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
97546
97470
-
Met
CAT
[ENA]
¡û
Identical group No.362063 (2 seq.)
>W1711575223
MNHS01000191
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_5 [MNHS]
16281
16205
-
Met
CAT
[ENA]
¡û
>W1711576095
MNKK01000095
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_7 [MNKK]
10224
10148
-
Met
CAT
[ENA]
¡û
Identical group No.362065 (4 seq.)
>W1711574194
MNEY01000007
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
24611
24685
+
Met
CAT
[ENA]
¡û
>W1711574972
MNGU01000107
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_56_11 [MNGU]
21878
21952
+
Met
CAT
[ENA]
¡û
>W1711575279
MNHX01000196
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_56_11 [MNHX]
13301
13227
-
Met
CAT
[ENA]
¡û
>W1711576140
MNKP01000020
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_55_15 [MNKP]
1036
962
-
Met
CAT
[ENA]
¡û
Identical group No.364287 (1 seq.)
>W131179240
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1862487
1862411
-
Met
CAT
[ENA]
¡û
Identical group No.364413 (1 seq.)
>W141557284
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
2640767
2640843
+
Met
CAT
[ENA]
¡û
Identical group No.371841 (1 seq.)
>C000175
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
5023126
5023050
-
Met
CAT
[Ensembl]
¡û
Identical group No.374235 (1 seq.)
>C000182
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
3907713
3907637
-
Met
CAT
[Ensembl]
¡û
Identical group No.380297 (2 seq.)
>W1910697426
MEKS01000025
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
40395
40471
+
Met
CAT
[ENA]
¡û
>W1910697729
MELA01000042
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11 [MELA]
2977
2901
-
Met
CAT
[ENA]
¡û
Identical group No.380535 (1 seq.)
>W1810046982
OKRE01000131
Acidobacteriota
Candidatus Sulfotelmatobacter sp. SbA7 SbA7 Peat soil MAG SbA7 [OKRE]
40844
40768
-
Met
CAT
[ENA]
¡û
Identical group No.380972 (2 seq.)
>C024939
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
1431217
1431141
-
Met
CAT
[Ensembl]
¡û
>W09102597
AAIA01000005
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
80133
80057
-
Met
CAT
[ENA]
¡û
Identical group No.392118 (3 seq.)
>W141564279
JIAQ01000006
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
20763
20687
-
Met
CAT
[ENA]
¡û
>W1511432653
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
115867
115943
+
Met
CAT
[ENA]
¡û
>W1710539045
FNVA01000002
Acidobacteriota
Bryocella elongata [FNVA]
578620
578544
-
Met
CAT
[ENA]
¡û
Identical group No.393139 (1 seq.)
>C09100226
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
3881649
3881725
+
Met
CAT
[Ensembl]
¡û
Identical group No.393170 (1 seq.)
>W121017782
AGSB01000058
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
84020
84096
+
Met
CAT
[ENA]
¡û
Identical group No.406711 (2 seq.)
>C181193318
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
3874075
3873999
-
Met
CAT
-
¡û
>W1911748635
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
2777298
2777374
+
Met
CAT
[ENA]
¡û
Identical group No.406718 (1 seq.)
>W1911748663
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
656391
656315
-
Met
CAT
[ENA]
¡û
Identical group No.406723 (1 seq.)
>W1810046999
OKRF01000039
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA3 SbA3 Peat soil MAG SbA3 [OKRF]
43471
43547
+
Met
CAT
[ENA]
¡û
Identical group No.406726 (1 seq.)
>W1810047008
OKRF01000166
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA3 SbA3 Peat soil MAG SbA3 [OKRF]
2668
2744
+
Met
CAT
[ENA]
¡û
Identical group No.406738 (1 seq.)
>W1810047254
OMOG01000745
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
11678
11602
-
Met
CAT
[ENA]
¡û
Identical group No.406927 (1 seq.)
>W1810915069
QVQT01000009
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
26168
26092
-
Met
CAT
[ENA]
¡û
Identical group No.414706 (1 seq.)
>W1910697473
MEKT01000126
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
388
462
+
Met
CAT
[ENA]
¡û
Identical group No.415684 (1 seq.)
>C161037464
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
2577621
2577697
+
Met
CAT
-
¡û
Identical group No.415685 (1 seq.)
>C161037468
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
3725622
3725698
+
Met
CAT
-
¡û
Identical group No.415885 (2 seq.)
>W1610083323
CBXV010000007
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
331223
331299
+
Met
CAT
[ENA]
¡û
>W1710088340
CBXV010000007
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
331223
331299
+
Met
CAT
[ENA]
¡û
Identical group No.416390 (1 seq.)
>W1711575911
MNJR01000093
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
3667
3741
+
Met
CAT
[ENA]
¡û
Identical group No.429850 (1 seq.)
>W1711573913
MNEC01000119
Acidobacteriota
Acidobacteriales bacterium 13_2_20CM_2_55_5 [MNEC]
9507
9583
+
Met
CAT
[ENA]
¡û
Identical group No.429857 (1 seq.)
>W1711574615
MNFT01000031
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_69_4 [MNFT]
17172
17248
+
Met
CAT
[ENA]
¡û
Identical group No.441710 (1 seq.)
>W141564070
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
551839
551763
-
Met
CAT
[ENA]
¡û
Identical group No.445600 (1 seq.)
>W1810046938
OKRB01000086
Acidobacteriota
Candidatus Sulfotelmatomonas gaucii SbA5 Peat soil MAG SbA5 [OKRB]
210143
210219
+
Met
CAT
[ENA]
¡û
Identical group No.446637 (1 seq.)
>W1711391198
MEKL01000060
Acidobacteriota
Acidobacteria bacterium RBG_16_70_10 [MEKL]
25308
25235
-
Met
CAT
[ENA]
¡û
Identical group No.447262 (1 seq.)
>W131179146
ARMD01000022
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
57525
57601
+
Met
CAT
[ENA]
¡û
Identical group No.447373 (1 seq.)
>W141730264
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
2253352
2253276
-
Met
CAT
[ENA]
¡û
Identical group No.447458 (1 seq.)
>W1511591100
LBHJ01000001
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
456096
456020
-
Met
CAT
[ENA]
¡û
Identical group No.486229 (1 seq.)
>W1710534890
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
1810455
1810380
-
Met
CAT
[ENA]
¡û
Identical group No.486961 (2 seq.)
>W1711573481
MNDG01000003
Acidobacteriota
Acidobacteriales bacterium 13_2_20CM_55_8 [MNDG]
16221
16296
+
Met
CAT
[ENA]
¡û
>W1711575000
MNGW01000047
Acidobacteriota
Acidobacteriales bacterium 13_1_40CM_3_55_5 [MNGW]
39393
39468
+
Met
CAT
[ENA]
¡û
Identical group No.524400 (1 seq.)
>W1910697368
MEKQ01000090
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20 [MEKQ]
8731
8806
+
Met
CAT
[ENA]
¡û
Identical group No.524405 (1 seq.)
>W1910697628
MEKX01000039
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
7927
7852
-
Met
CAT
[ENA]
¡û
Identical group No.524407 (2 seq.)
>W1910697639
MEKX01000111
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
2963
3038
+
Met
CAT
[ENA]
¡û
>W1910697703
MEKZ01000062
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
567
492
-
Met
CAT
[ENA]
¡û
Identical group No.552257 (1 seq.)
>W1711575705
MNJG01000222
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_56_7 [MNJG]
13261
13336
+
Met
CAT
[ENA]
¡û
Identical group No.562047 (2 seq.)
>W1910697339
MEKP01000093
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 [MEKP]
6148
6073
-
Met
CAT
[ENA]
¡û
>W1910697655
MEKY01000040
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
12269
12194
-
Met
CAT
[ENA]
¡û
Identical group No.562718 (1 seq.)
>C000161
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
4130979
4131054
+
Met
CAT
[Ensembl]
¡û
Identical group No.572772 (1 seq.)
>W1810046980
OKRE01000131
Acidobacteriota
Candidatus Sulfotelmatobacter sp. SbA7 SbA7 Peat soil MAG SbA7 [OKRE]
3235
3310
+
Met
CAT
[ENA]
¡û
Identical group No.572773 (1 seq.)
>W1810046997
OKRE01000191
Acidobacteriota
Candidatus Sulfotelmatobacter sp. SbA7 SbA7 Peat soil MAG SbA7 [OKRE]
3935
4010
+
Met
CAT
[ENA]
¡û
Identical group No.576089 (2 seq.)
>C024941
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
709622
709547
-
Met
CAT
[Ensembl]
¡û
>W09102591
AAIA01000002
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
249261
249336
+
Met
CAT
[ENA]
¡û
Identical group No.587392 (1 seq.)
>W141696008
JMFG01000002
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
175828
175753
-
Met
CAT
[ENA]
¡û
Identical group No.602251 (1 seq.)
>W1910697381
MEKR01000023
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
23868
23943
+
Met
CAT
[ENA]
¡û
Identical group No.602253 (1 seq.)
>W1910697405
MEKR01000175
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
4972
4897
-
Met
CAT
[ENA]
¡û
Identical group No.602664 (2 seq.)
>W141564069
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
764689
764614
-
Met
CAT
[ENA]
¡û
>W1810915044
QVQT01000004
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
11654
11729
+
Met
CAT
[ENA]
¡û
Identical group No.614518 (1 seq.)
>W131179173
ARME01000006
Acidobacteriota
Acidobacteriaceae bacterium KBS 89 [ARME]
868401
868476
+
Met
CAT
[ENA]
¡û
Identical group No.619661 (1 seq.)
>W1910548802
FZOU01000001
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
148711
148636
-
Met
CAT
[ENA]
¡û
Identical group No.627356 (1 seq.)
>C181193319
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
3759337
3759262
-
Met
CAT
-
¡û
Identical group No.628898 (1 seq.)
>W1711573395
MNDC01000027
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
80723
80648
-
Met
CAT
[ENA]
¡û
Identical group No.639804 (1 seq.)
>C11106441
CP002514
Acidobacteriota
Chloracidobacterium thermophilum B [CP002514, CP002515]
453466
453391
-
Met
CAT
[Ensembl]
¡û
Identical group No.647890 (1 seq.)
>W1711502570
MKSV01000003
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
431247
431172
-
Met
CAT
[ENA]
¡û
Identical group No.648605 (1 seq.)
>W131179155
ARMD01000023
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
362854
362779
-
Met
CAT
[ENA]
¡û
Identical group No.648700 (1 seq.)
>W141730242
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
1497236
1497311
+
Met
CAT
[ENA]
¡û
Identical group No.698054 (1 seq.)
>W1711575373
MNIJ01000229
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_58_21 [MNIJ]
31027
30953
-
Met
CAT
[ENA]
¡û
Identical group No.726806 (2 seq.)
>C024912
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
4360710
4360781
+
Met
CAT
[Ensembl]
¡û
>W09102603
AAIA01000014
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
26241
26313
+
Met
CAT
[ENA]
¡û
Identical group No.735313 (2 seq.)
>W1711391136
MEKI01000110
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
6311
6237
-
Met
CAT
[ENA]
¡û
>W141696023
JMFG01000011
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
13770
13696
-
Met
CAT
[ENA]
¡û
Identical group No.739924 (1 seq.)
>W1711574205
MNEY01000103
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
7443
7369
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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