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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = TCA
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.11517 (1 seq.)
>A173000078
CP002737
Euryarchaeota
Methanotorris igneus Kol 5 [CP002737]
979209
979299
+
SeC
TCA
-
¡û
Identical group No.12443 (4 seq.)
>A175000090
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
1729654
1729743
+
SeC
TCA
-
¡û
>At2284
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
1644096
1644185
+
SeC
TCA
[Ensembl]
¡û
>At2285
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
938599
938688
+
SeC
TCA
[Ensembl]
¡û
>W1650000014
AAZM01000001
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
50111
50022
-
SeC
TCA
[ENA]
¡û
Identical group No.15456 (6 seq.)
>A175000009
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
918345
918256
-
SeC
TCA
-
¡û
>At2286
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
1655591
1655502
-
SeC
TCA
[Ensembl]
¡û
>At2288
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
1021153
1021242
+
SeC
TCA
[Ensembl]
¡û
>W1650000011
AAWI01000004
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
250820
250909
+
SeC
TCA
[ENA]
¡û
>W1650000012
AAWX01000001
Euryarchaeota
Methanococcus vannielii SB [AAWX]
757723
757812
+
SeC
TCA
[ENA]
¡û
>W1650000021
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
17786
17697
-
SeC
TCA
[ENA]
¡û
Identical group No.17230 (1 seq.)
>A175000056
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1412925
1413014
+
SeC
TCA
-
¡û
Identical group No.20339 (3 seq.)
>A173000037
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
982631
982719
+
SeC
TCA
-
¡û
>At0921
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
111768
111852
+
SeC
TCA
[Ensembl]
¡û
>W1630000123
ADCA01000002
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
39108
39020
-
SeC
TCA
[ENA]
¡û
Identical group No.21481 (1 seq.)
>A173000208
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
757235
757147
-
SeC
TCA
-
¡û
Identical group No.25476 (2 seq.)
>A173000035
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1031103
1031015
-
SeC
TCA
-
¡û
>W1630000116
ACUW01000002
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
419718
419806
+
SeC
TCA
[ENA]
¡û
Identical group No.28518 (2 seq.)
>At2289
CP000743
Euryarchaeota
Methanococcus aeolicus Nankai-3 [CP000743]
227156
227068
-
SeC
TCA
[Ensembl]
¡û
>W1650000013
AAZL01000001
Euryarchaeota
Methanococcus aeolicus Nankai-3 [AAZL]
562444
562356
-
SeC
TCA
[ENA]
¡û
Identical group No.28523 (1 seq.)
>A173000042
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
487257
487345
+
SeC
TCA
-
¡û
Identical group No.33019 (2 seq.)
>A172000024
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
136348
136261
-
SeC
TCA
-
¡û
>W1610002143
AEDA01000009
Euryarchaeota
Methanothermococcus okinawensis IH1 [AEDA]
49410
49323
-
SeC
TCA
[ENA]
¡û
Identical group No.61614 (1 seq.)
>At2290
AE009439
Euryarchaeota
Methanopyrus kandleri AV19 [AE009439]
188240
188326
+
SeC
TCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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