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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = CAT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238729 (1 seq.)
>A17A001825
LN890280
Nitrososphaerota
Candidatus Nitrosotalea devanaterra [LN890280]
1429091
1429184
+
Met
CAT
-
¡û
Identical group No.244898 (2 seq.)
>A173000292
CP012850
Nitrososphaerota
Candidatus Nitrosocosmicus oleophilus MY3 [CP012850]
2284815
2284890
+
Met
CAT
-
¡û
>A173000324
CP017922
Nitrososphaerota
Candidatus Nitrosocosmicus hydrocola G61 [CP017922]
1726377
1726302
-
Met
CAT
-
¡û
Identical group No.250845 (4 seq.)
>A17A000963
CP003843
Nitrososphaerota
Candidatus Nitrosopumilus sediminis AR2 [CP003843]
1228755
1228870
+
Met
CAT
-
¡û
>A17A000051
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
1212832
1212946
+
Met
CAT
-
¡û
>A17A000958
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
1246594
1246708
+
Met
CAT
-
¡û
>A17A001323
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
679867
679753
-
Met
CAT
-
¡û
Identical group No.259868 (2 seq.)
>A171004258
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
2079162
2079087
-
Met
CAT
-
¡û
>A171004335
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
968450
968375
-
Met
CAT
-
¡û
Identical group No.259890 (4 seq.)
>A173000182
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
2430700
2430775
+
Met
CAT
-
¡û
>A173000193
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
1290201
1290276
+
Met
CAT
-
¡û
>A179000207
CP002408
Nitrososphaerota
Candidatus Nitrososphaera gargensis Ga9.2 [CP002408]
336050
336141
+
Met
CAT
-
¡û
>A175000064
CP002408
Nitrososphaerota
Candidatus Nitrososphaera gargensis Ga9.2 [CP002408]
336050
336143
+
Met
CAT
-
¡û
Identical group No.264094 (1 seq.)
>A17A001118
CP007026
Nitrososphaerota
Candidatus Nitrosopelagicus brevis CN25 [CP007026]
879625
879742
+
Met
CAT
-
¡û
Identical group No.266444 (1 seq.)
>A17A001682
CP021324
Nitrososphaerota
Candidatus Nitrosomarinus catalina SPOT01 [CP021324]
315644
315529
-
Met
CAT
-
¡û
Identical group No.268550 (1 seq.)
>A179000594
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
472971
472869
-
Met
CAT
-
¡û
Identical group No.268702 (1 seq.)
>At0095
DP000238
Nitrososphaerota
Cenarchaeum symbiosum [DP000238]
1989473
1989384
-
Met
CAT
[Ensembl]
¡û
Identical group No.441157 (1 seq.)
>At0055
DP000238
Nitrososphaerota
Cenarchaeum symbiosum [DP000238]
166015
166105
+
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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