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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = CGA
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95731 (2 seq.)
>A17A000956
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
453933
454034
+
Ser
CGA
-
¡û
>A17A001325
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
1403895
1403794
-
Ser
CGA
-
¡û
Identical group No.107073 (1 seq.)
>A178000412
CP007026
Nitrososphaerota
Candidatus Nitrosopelagicus brevis CN25 [CP007026]
670256
670155
-
Ser
CGA
-
¡û
Identical group No.186279 (4 seq.)
>A171003396
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
623349
623432
+
Ser
CGA
-
¡û
>W1610003102
AEXL02000120
Nitrososphaerota
Candidatus Nitrosopumilus salaria salaria BD31 [AEXL]
21218
21135
-
Ser
CGA
[ENA]
¡û
>W1610005412
AJVI01000008
Nitrososphaerota
Nitrosopumilus sp. SJ [AJVI]
20252
20335
+
Ser
CGA
[ENA]
¡û
>W1610005439
AJVJ01000024
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
20374
20457
+
Ser
CGA
[ENA]
¡û
Identical group No.190403 (2 seq.)
>A173000121
CP003843
Nitrososphaerota
Candidatus Nitrosopumilus sediminis AR2 [CP003843]
608480
608563
+
Ser
CGA
-
¡û
>W1630000369
AJVJ01000002
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
19746
19829
+
Ser
CGA
[ENA]
¡û
Identical group No.196117 (2 seq.)
>A171000238
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
647813
647896
+
Ser
CGA
-
¡û
>W1610000552
ABEO01000002
Nitrososphaerota
Nitrosopumilus maritimus maritimus SCM1 [ABEO]
242481
242564
+
Ser
CGA
[ENA]
¡û
Identical group No.201120 (2 seq.)
>A171005927
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
1220588
1220505
-
Ser
CGA
-
¡û
>W1610617259
LGTD01000712
Nitrososphaerota
Candidatus Nitrosopumilus sp. DDS1 [LGTD]
6670
6752
+
Ser
CGA
[ENA]
¡û
Identical group No.206738 (1 seq.)
>A178000738
LN890280
Nitrososphaerota
Candidatus Nitrosotalea devanaterra [LN890280]
651964
652059
+
Ser
CGA
-
¡û
Identical group No.213246 (1 seq.)
>A171006033
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
1144762
1144680
-
Ser
CGA
-
¡û
Identical group No.215591 (1 seq.)
>A178000557
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
998778
998680
-
Ser
CGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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