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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
Anticodon = GGA
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.22543 (1 seq.)
>SRA1003110
SRR002326.204961
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
110
201
+
Ser
GGA
[SRA]
Identical group No.26597 (1 seq.)
>SRA1004141
SRR002328.168169
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
137
228
+
Ser
GGA
[SRA]
Identical group No.34520 (1 seq.)
>SRA1002985
SRR002326.136529
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
46
136
+
Ser
GGA
[SRA]
Identical group No.34523 (1 seq.)
>SRA1003143
SRR002326.239915
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
114
204
+
Ser
GGA
[SRA]
Identical group No.34524 (6 seq.)
>WENV180343634
OBLK01051810
[OBLK] soil metagenome; Clay
202
292
+
Ser
GGA
[ENA]
¢þ
>WENV170994182
MWWD01026860
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
91
181
+
Ser
GGA
[ENA]
¢þ
>SRA1003198
SRR002326.299386
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
74
164
+
Ser
GGA
[SRA]
>SRA1003611
SRR002327.67714
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
189
99
-
Ser
GGA
[SRA]
>SRA1003718
SRR002327.143032
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
237
147
-
Ser
GGA
[SRA]
>W1511324683
JQFJ01000002
Alphaproteobacteria
Sphingopyxis sp. MWB1 [JQFJ]
173324
173234
-
Ser
GGA
[ENA]
¡û
Identical group No.37026 (1 seq.)
>SRA1003734
SRR002327.150987
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
158
68
-
Ser
GGA
[SRA]
Identical group No.37028 (1 seq.)
>SRA1003767
SRR002327.170743
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
204
291
+
Ser
GGA
[SRA]
Identical group No.52729 (2 seq.)
>SRA1002997
SRR002326.145056
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
147
58
-
Ser
GGA
[SRA]
>SRA1004006
SRR002328.91900
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
115
204
+
Ser
GGA
[SRA]
Identical group No.52731 (1 seq.)
>SRA1003047
SRR002326.170029
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
45
134
+
Ser
GGA
[SRA]
Identical group No.52733 (4 seq.)
>W141565129
JIBH01000001
Betaproteobacteria
Polaromonas sp. EUR3 1.2.1 [JIBH]
1826904
1826815
-
Ser
GGA
[ENA]
¡û
>W1910699886
MERZ01000203
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11 [MERZ]
153
242
+
Ser
GGA
[ENA]
¡û
>SRA1003123
SRR002326.220178
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
60
149
+
Ser
GGA
[SRA]
>SRA1003559
SRR002327.31702
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
98
9
-
Ser
GGA
[SRA]
Identical group No.52739 (1 seq.)
>SRA1003391
SRR002326.432974
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
94
5
-
Ser
GGA
[SRA]
Identical group No.56655 (1 seq.)
>SRA1003788
SRR002327.186129
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
158
69
-
Ser
GGA
[SRA]
Identical group No.56656 (1 seq.)
>SRA1003797
SRR002327.189487
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
259
170
-
Ser
GGA
[SRA]
Identical group No.56657 (14 seq.)
>WENV181379392
OFRD01001083
[OFRD] wastewater metagenome; Exp Tend CN 100WW
2673
2760
+
Ser
GGA
[ENA]
¢þ
>WENV181384106
OFRH01017887
[OFRH] wastewater metagenome; Exp Tend NO 100WW
118
31
-
Ser
GGA
[ENA]
¢þ
>WENV183621230
OOFT01023009
[OOFT] marine metagenome; sea ice
564
651
+
Ser
GGA
[ENA]
¢þ
>WENV170559849
CXWL01161303
[CXWL] groundwater metagenome; biofilm material
1545
1634
+
Ser
GGA
[ENA]
¢þ
>W1810072199
PEFE01000001
Bacteroidota
Flavobacterium sp. 11 [PEFE]
684981
684894
-
Ser
GGA
[ENA]
¡û
>W1810121187
PHUE01000001
Bacteroidota
Flavobacterium sp. 5 [PHUE]
1728787
1728700
-
Ser
GGA
[ENA]
¡û
>SRA1003836
SRR002327.220806
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
223
136
-
Ser
GGA
[SRA]
>W1810722608
QNUX01000011
Bacteroidota
Flavobacterium psychrolimnae LMG 22018 [QNUX]
57597
57684
+
Ser
GGA
[ENA]
¡û
>W1810723020
QNVY01000001
Bacteroidota
Flavobacterium petrolei Kopri-42 [QNVY]
240937
240850
-
Ser
GGA
[ENA]
¡û
>W1511390938
JSYM01000004
Bacteroidota
Flavobacterium sp. AED [JSYM]
59167
59078
-
Ser
GGA
[ENA]
¡û
>W1710533469
FNRD01000002
Bacteroidota
Flavobacterium gillisiae [FNRD]
66473
66384
-
Ser
GGA
[ENA]
¡û
>W1710548166
FODN01000007
Bacteroidota
Flavobacterium sinopsychrotolerans [FODN]
168760
168849
+
Ser
GGA
[ENA]
¡û
>W1710551340
FOFZ01000011
Bacteroidota
Flavobacterium frigoris [FOFZ]
40918
41007
+
Ser
GGA
[ENA]
¡û
>W1710592412
FRCL01000002
Bacteroidota
Flavobacterium xinjiangense [FRCL]
128825
128912
+
Ser
GGA
[ENA]
¡û
Identical group No.56658 (1 seq.)
>SRA1003845
SRR002327.227510
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
204
115
-
Ser
GGA
[SRA]
Identical group No.63110 (1 seq.)
>SRA1003917
SRR002328.33775
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
82
169
+
Ser
GGA
[SRA]
Identical group No.93356 (1 seq.)
>SRA1003105
SRR002326.200485
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
238
150
-
Ser
GGA
[SRA]
Identical group No.97222 (6 seq.)
>W1710853229
LLWK01000038
Bacteroidota
Flavobacterium sp. TAB 87 [LLWK]
627783
627868
+
Ser
GGA
[ENA]
¡û
>W131225428
AUDO01000009
Bacteroidota
Flavobacterium frigidarium DSM 17623 [AUDO]
37045
36958
-
Ser
GGA
[ENA]
¡û
>SRA1003537
SRR002327.6983
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
163
78
-
Ser
GGA
[SRA]
>W1610716353
LLWK01000038
Bacteroidota
Flavobacterium sp. TAB 87 [LLWK]
627783
627868
+
Ser
GGA
[ENA]
¡û
>W1710585196
FQWE01000002
Bacteroidota
Flavobacterium segetis [FQWE]
352217
352130
-
Ser
GGA
[ENA]
¡û
>W1710585244
FQWF01000008
Bacteroidota
Flavobacterium micromati [FQWF]
175054
175141
+
Ser
GGA
[ENA]
¡û
Identical group No.97228 (1 seq.)
>SRA1003676
SRR002327.115536
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
213
126
-
Ser
GGA
[SRA]
Identical group No.103388 (1 seq.)
>SRA1004229
SRR002328.212721
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
118
205
+
Ser
GGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK