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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = GGC
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338088 (4 seq.)
>A171001350
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
56475
56548
+
Ala
GGC
-
¡û
>W1610000646
ABSD01000014
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
46158
46232
+
Ala
GGC
[ENA]
¡û
>W1610000670
ABSD01000037
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
14866
14793
-
Ala
GGC
[ENA]
¡û
>W1610001682
ADFG01000001
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
88501
88574
+
Ala
GGC
[ENA]
¡û
Identical group No.361460 (1 seq.)
>A171002866
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
96634
96709
+
Ala
GGC
-
¡û
Identical group No.455547 (23 seq.)
>A171002549
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1179408
1179335
-
Ala
GGC
-
¡û
>A171003536
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1355489
1355416
-
Ala
GGC
-
¡û
>A171006507
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
279228
279303
+
Ala
GGC
-
¡û
>WENV180098557
MTBK01253124
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
105
180
+
Ala
GGC
[ENA]
¢þ
>WENV180326043
OBKS01022570
[OBKS] human gut metagenome; human gut
1380
1307
-
Ala
GGC
[ENA]
¢þ
>WENV180340752
OBLI01042803
[OBLI] pig gut metagenome; faeces
1248
1321
+
Ala
GGC
[ENA]
¢þ
>WENV180346889
OBLN01386469
[OBLN] sediment metagenome; sediment
185
112
-
Ala
GGC
[ENA]
¢þ
>WENV180664349
OCVV011155471
[OCVV] gut metagenome; gut
1300
1225
-
Ala
GGC
[ENA]
¢þ
>WENV180664350
OCVV011155471
[OCVV] gut metagenome; gut
1300
1225
-
Ala
GGC
[ENA]
¢þ
>WENV180674433
OCVV011351340
[OCVV] gut metagenome; gut
1830
1905
+
Ala
GGC
[ENA]
¢þ
>WENV180674434
OCVV011351340
[OCVV] gut metagenome; gut
1830
1905
+
Ala
GGC
[ENA]
¢þ
>WENV181606941
OGLM01001951
[OGLM] metagenome; Human gut stool
4923
4850
-
Ala
GGC
[ENA]
¢þ
>WENV181655696
OGOB01000572
[OGOB] metagenome; Human gut stool
11210
11137
-
Ala
GGC
[ENA]
¢þ
>WENV181772442
OGRD01003637
[OGRD] human gut metagenome; faeces
4378
4451
+
Ala
GGC
[ENA]
¢þ
>WENV182525987
OIWT01006229
[OIWT] human gut metagenome; faeces
367
294
-
Ala
GGC
[ENA]
¢þ
>WENV183045947
OLGE01041473
[OLGE] human gut metagenome; faeces
367
294
-
Ala
GGC
[ENA]
¢þ
>WENV183382842
OLYL01022278
[OLYL] human gut metagenome; feces
742
815
+
Ala
GGC
[ENA]
¢þ
>WENV183439025
OMCF01022278
[OMCF] human gut metagenome; feces
742
815
+
Ala
GGC
[ENA]
¢þ
>WENV183458562
OMDM01026593
[OMDM] human gut metagenome; feces
1054
981
-
Ala
GGC
[ENA]
¢þ
>WENV183517906
OMNP01024815
[OMNP] human gut metagenome; feces
309
382
+
Ala
GGC
[ENA]
¢þ
>WENV170718052
LSQX01059363
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
6375
6300
-
Ala
GGC
[ENA]
¢þ
>W1610011063
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
620679
620752
+
Ala
GGC
[ENA]
¡û
>W1610651897
LJKL01000013
Unclassified
Methanomassiliicoccales archaeon RumEn M2 [LJKL]
82800
82875
+
Ala
GGC
[ENA]
¡û
Identical group No.456289 (14 seq.)
>A171003719
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
344583
344510
-
Ala
GGC
-
¡û
>WENV181035960
ODXP01000081
[ODXP] human metagenome; G_DNA_Stool
64404
64331
-
Ala
GGC
[ENA]
¢þ
>WENV181088683
OEBA01003651
[OEBA] human metagenome; G_DNA_Stool
3255
3328
+
Ala
GGC
[ENA]
¢þ
>WENV181701998
OGPH01012074
[OGPH] human gut metagenome; faeces
222
149
-
Ala
GGC
[ENA]
¢þ
>WENV182536308
OIXH01000420
[OIXH] human gut metagenome; faeces
39707
39780
+
Ala
GGC
[ENA]
¢þ
>WENV183038615
OLGB01000850
[OLGB] human gut metagenome; faeces
39190
39263
+
Ala
GGC
[ENA]
¢þ
>WENV183041307
OLGD01000561
[OLGD] human gut metagenome; faeces
39707
39780
+
Ala
GGC
[ENA]
¢þ
>WENV170563291
CZCB01013721
[CZCB] anaerobic digester metagenome; anaerobic digester
827
754
-
Ala
GGC
[ENA]
¢þ
>WENV170688697
LFRM01258552
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
52509
52582
+
Ala
GGC
[ENA]
¢þ
>WENV170721235
LSQX01182909
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
33470
33543
+
Ala
GGC
[ENA]
¢þ
>WENV170969799
MTKW01039935
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1268
1195
-
Ala
GGC
[ENA]
¢þ
>W1610082856
CAJE01000013
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
252247
252172
-
Ala
GGC
[ENA]
¡û
>W1610605365
LFRW01000035
Euryarchaeota
Methanomicrobia archaeon DTU008 [LFRW]
52509
52582
+
Ala
GGC
[ENA]
¡û
>W1610651843
LJKK01000009
Unclassified
Methanomassiliicoccales archaeon RumEn M1 [LJKK]
56643
56716
+
Ala
GGC
[ENA]
¡û
Identical group No.563624 (1 seq.)
>A171000298
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1405581
1405654
+
Ala
GGC
-
¡û
Identical group No.647543 (1 seq.)
>A171005742
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
863304
863230
-
Ala
GGC
-
¡û
Identical group No.674647 (9 seq.)
>A171003631
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1676285
1676214
-
Ala
GGC
-
¡û
>A171006635
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
626516
626445
-
Ala
GGC
-
¡û
>W141000057
AADL01001227
Unclassified
mine drainage metagenome Group III [AADL]
626
555
-
Ala
GGC
[ENA]
¡û
>W141000073
AADL01001492
Unclassified
mine drainage metagenome Group III [AADL]
5598
5669
+
Ala
GGC
[ENA]
¡û
>W141000143
AADL01002036
Unclassified
mine drainage metagenome Group III [AADL]
700
628
-
Ala
GGC
[ENA]
¡û
>W1610000077
AABC05000014
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
332167
332096
-
Ala
GGC
[ENA]
¡û
>WENV077065
AADL01001227
Acid Mine Drainage microbial communities from Richmond mine
626
552
-
Ala
GGC
[ENA]
>WENV077081
AADL01001492
Acid Mine Drainage microbial communities from Richmond mine
5598
5672
+
Ala
GGC
[ENA]
>WENV077151
AADL01002036
Acid Mine Drainage microbial communities from Richmond mine
700
626
-
Ala
GGC
[ENA]
Identical group No.675906 (3 seq.)
>A171007733
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
681169
681240
+
Ala
GGC
-
¡û
>A171007770
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
681721
681792
+
Ala
GGC
-
¡û
>ENV09002228
ACXJ01011354
Mine drainage metagenome Contig1
7367
7438
+
Ala
GGC
[ENA]
¡û
Identical group No.675910 (4 seq.)
>At2007
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1451378
1451307
-
Ala
GGC
[Ensembl]
¡û
>W1911681184
QJSM01000038
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
23414
23485
+
Ala
GGC
[ENA]
¡û
>ENV09002258
ACXJ01012178
Mine drainage metagenome Contig1
673
745
+
Ala
GGC
[ENA]
¡û
>ENV09002285
ACXK01000057
Thermoplasmatales archaeon A-plasma AplasmaContig10144
13331
13259
-
Ala
GGC
[ENA]
¡û
Identical group No.706843 (1 seq.)
>At2052
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1494826
1494755
-
Ala
GGC
[Ensembl]
¡û
Identical group No.721442 (2 seq.)
>At1767
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
781760
781689
-
Ala
GGC
[Ensembl]
¡û
>W1910469078
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
195476
195547
+
Ala
GGC
[ENA]
¡û
Identical group No.775533 (1 seq.)
>C151068555
CP010426
Unclassified
archaeon GW2011_AR20 [CP010426]
129902
129975
+
Ala
GGC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK