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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CAC
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.352289 (2 seq.)
>FU090900054
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
82130
82234
+
Val
CAC
[ENA]
¡û
>FG091800010
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
2211874
2211770
-
Val
CAC
[ENA]
¡û
Identical group No.490154 (1 seq.)
>FG090100028
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
20500
20574
+
Val
CAC
[ENA]
¡û
Identical group No.510144 (2 seq.)
>FG090800143
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
323200
323120
-
Val
CAC
[ENA]
¡û
>FU090900271
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
2996512
2996602
+
Val
CAC
[ENA]
¡û
Identical group No.541146 (1 seq.)
>FG090100438
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
336425
336351
-
Val
CAC
[ENA]
¡û
Identical group No.541147 (2 seq.)
>FG090100762
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
43742
43814
+
Val
CAC
[ENA]
¡û
>FG091100155
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3664826
3664753
-
Val
CAC
[ENA]
¡û
Identical group No.541148 (3 seq.)
>FG090100697
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2938459
2938532
+
Val
CAC
[ENA]
¡û
>FG090100776
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3101343
3101271
-
Val
CAC
[ENA]
¡û
>FG090100778
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3030141
3030069
-
Val
CAC
[ENA]
¡û
Identical group No.541151 (4 seq.)
>WENV170659128
JXWR01000304
[JXWR] soil metagenome; rice field; ambient CO2
7902
7828
-
Val
CAC
[ENA]
¢þ
>WENV170659525
JXWR01008196
[JXWR] soil metagenome; rice field; ambient CO2
377
451
+
Val
CAC
[ENA]
¢þ
>SC0100036
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
1075541
1075467
-
Val
CAC
[ENA]
¡û
>SC0100099
NC_001140
Ascomycota
Saccharomyces cerevisiae S288c
475779
475705
-
Val
CAC
[ENA]
¡û
Identical group No.564721 (1 seq.)
>FG090100388
AL590449
Microsporidia
Encephalitozoon_cuniculi_GB-M1
21671
21599
-
Val
CAC
[ENA]
¡û
Identical group No.575241 (1 seq.)
>FG090800156
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1028206
1028112
-
Val
CAC
[ENA]
¡û
Identical group No.586968 (1 seq.)
>FG090100114
CR380952
Ascomycota
Candida glabrata CBS 138 CBS138
832675
832598
-
Val
CAC
[ENA]
¡û
Identical group No.597161 (2 seq.)
>FG090100012
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
253864
253792
-
Val
CAC
[ENA]
¡û
>FG091100056
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
678334
678262
-
Val
CAC
[ENA]
¡û
Identical group No.604502 (1 seq.)
>FG090100026
AE016816
Ascomycota
Ashbya gossypii ATCC 10895
138033
137961
-
Val
CAC
[ENA]
¡û
Identical group No.622064 (1 seq.)
>FG091100106
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
823592
823666
+
Val
CAC
[ENA]
¡û
Identical group No.675914 (1 seq.)
>FG090100538
CP000496
Ascomycota
Pichia stipitis CBS 6054
217571
217644
+
Val
CAC
[ENA]
¡û
Identical group No.714652 (1 seq.)
>FG092110002
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
446000
446071
+
Val
CAC
[ENA]
¡û
Identical group No.745856 (1 seq.)
>FG090100238
CR382133
Ascomycota
Debaryomyces hansenii CBS767
83619
83690
+
Val
CAC
[ENA]
¡û
Identical group No.745859 (1 seq.)
>FG090300007
CP000501
Ascomycota
Pichia stipitis CBS 6054
549481
549552
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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