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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CGA
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.172241 (1 seq.)
>FG091900196
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
870640
870545
-
Pseudo
CGA
[ENA]
¡û
Identical group No.190893 (4 seq.)
>FG090800147
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1817428
1817519
+
Ser
CGA
[ENA]
¡û
>FG090800166
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1716550
1716459
-
Ser
CGA
[ENA]
¡û
>FU090900246
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2579245
2579154
-
Ser
CGA
[ENA]
¡û
>FG091900280
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
473295
473204
-
Ser
CGA
[ENA]
¡û
Identical group No.199429 (1 seq.)
>FG092810001
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
1096369
1096466
+
Ser
CGA
[ENA]
¡û
Identical group No.199432 (4 seq.)
>FG090800014
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
911660
911560
-
Ser
CGA
[ENA]
¡û
>SC0900050
NC_001135
Ascomycota
Saccharomyces cerevisiae S288c
227938
228038
+
Ser
CGA
[ENA]
¡û
>FG091500005
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
771218
771123
-
Ser
CGA
[ENA]
¡û
>FG091900226
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
771217
771124
-
Ser
CGA
[ENA]
¡û
Identical group No.205476 (1 seq.)
>FG090100359
AL590442
Microsporidia
Encephalitozoon_cuniculi_GB-M1
62756
62675
-
Ser
CGA
[ENA]
¡û
Identical group No.207292 (2 seq.)
>FG090200001
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
433044
432951
-
Ser
CGA
[ENA]
¡û
>FU090900003
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
433044
432951
-
Ser
CGA
[ENA]
¡û
Identical group No.208689 (1 seq.)
>FG091900166
AE016816
Ascomycota
Ashbya gossypii ATCC 10895
661693
661600
-
Ser
CGA
[ENA]
¡û
Identical group No.213539 (1 seq.)
>FG091800004
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1085121
1085030
-
Ser
CGA
[ENA]
¡û
Identical group No.221784 (1 seq.)
>FU090900115
CR382138
Ascomycota
Debaryomyces hansenii CBS767
969456
969547
+
Ser
CGA
[ENA]
¡û
Identical group No.224958 (2 seq.)
>FG090800079
CP000497
Ascomycota
Pichia stipitis CBS 6054
215676
215767
+
Ser
CGA
[ENA]
¡û
>FU090900164
CM000437
Ascomycota
Pichia stipitis CBS 6054
2785264
2785172
-
Ser
CGA
[ENA]
¡û
Identical group No.231590 (1 seq.)
>FG091900006
AE016816
Ascomycota
Ashbya gossypii ATCC 10895
661694
661599
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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