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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GTT
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280947 (20 seq.)
>WENV180315487
OBKH01107589
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
119
46
-
Asn
GTT
[ENA]
¢þ
>WENV170659526
JXWR01008295
[JXWR] soil metagenome; rice field; ambient CO2
199
272
+
Asn
GTT
[ENA]
¢þ
>WENV170659552
JXWR01009792
[JXWR] soil metagenome; rice field; ambient CO2
206
279
+
Asn
GTT
[ENA]
¢þ
>WENV170659599
JXWR01012796
[JXWR] soil metagenome; rice field; ambient CO2
3982
3909
-
Asn
GTT
[ENA]
¢þ
>WENV170659603
JXWR01013065
[JXWR] soil metagenome; rice field; ambient CO2
378
305
-
Asn
GTT
[ENA]
¢þ
>WENV170659618
JXWR01015319
[JXWR] soil metagenome; rice field; ambient CO2
580
506
-
Asn
GTT
[ENA]
¢þ
>WENV170659641
JXWR01018800
[JXWR] soil metagenome; rice field; ambient CO2
200
275
+
Asn
GTT
[ENA]
¢þ
>WENV170659667
JXWR01022944
[JXWR] soil metagenome; rice field; ambient CO2
2412
2485
+
Asn
GTT
[ENA]
¢þ
>WENV170659672
JXWR01024858
[JXWR] soil metagenome; rice field; ambient CO2
824
749
-
Asn
GTT
[ENA]
¢þ
>WENV170660471
JXWT01113138
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
119
46
-
Asn
GTT
[ENA]
¢þ
>SC0100015
NC_001135
Ascomycota
Saccharomyces cerevisiae S288c
127713
127788
+
Asn
GTT
[ENA]
¡û
>SC0100068
NC_001138
Ascomycota
Saccharomyces cerevisiae S288c
137555
137480
-
Asn
GTT
[ENA]
¡û
>SC0100076
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
731142
731215
+
Asn
GTT
[ENA]
¡û
>SC0100133
NC_001143
Ascomycota
Saccharomyces cerevisiae S288c
74629
74703
+
Asn
GTT
[ENA]
¡û
>SC0100153
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
976053
975980
-
Asn
GTT
[ENA]
¡û
>SC0100175
NC_001146
Ascomycota
Saccharomyces cerevisiae S288c
102716
102789
+
Asn
GTT
[ENA]
¡û
>SC0100178
NC_001146
Ascomycota
Saccharomyces cerevisiae S288c
632600
632675
+
Asn
GTT
[ENA]
¡û
>SC0100185
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
228330
228403
+
Asn
GTT
[ENA]
¡û
>SC0100187
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
487441
487514
+
Asn
GTT
[ENA]
¡û
>SC0100202
NC_001148
Ascomycota
Saccharomyces cerevisiae S288c
810671
810746
+
Asn
GTT
[ENA]
¡û
Identical group No.293076 (9 seq.)
>WENV183511981
OMJG01032596
[OMJG] food metagenome; Cotija cheese
252
326
+
Asn
GTT
[ENA]
¢þ
>FG090100240
CR382133
Ascomycota
Debaryomyces hansenii CBS767
375199
375126
-
Asn
GTT
[ENA]
¡û
>FG090100249
CR382134
Ascomycota
Debaryomyces hansenii CBS767
441019
441094
+
Asn
GTT
[ENA]
¡û
>FG090100258
CR382135
Ascomycota
Debaryomyces hansenii CBS767
323941
323866
-
Asn
GTT
[ENA]
¡û
>FG090100275
CR382137
Ascomycota
Debaryomyces hansenii CBS767
387193
387269
+
Asn
GTT
[ENA]
¡û
>FG090100303
CR382137
Ascomycota
Debaryomyces hansenii CBS767
436469
436394
-
Asn
GTT
[ENA]
¡û
>FG090100307
CR382137
Ascomycota
Debaryomyces hansenii CBS767
266104
266029
-
Asn
GTT
[ENA]
¡û
>FG090100349
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1525623
1525549
-
Asn
GTT
[ENA]
¡û
>FG091100174
CR382135
Ascomycota
Debaryomyces hansenii CBS767
720348
720424
+
Asn
GTT
[ENA]
¡û
Identical group No.323947 (8 seq.)
>FG090100040
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
477711
477786
+
Asn
GTT
[ENA]
¡û
>FG090100059
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
413915
413842
-
Asn
GTT
[ENA]
¡û
>FG090100079
CR380948
Ascomycota
Candida glabrata CBS 138 CBS138
486876
486951
+
Asn
GTT
[ENA]
¡û
>FG090100091
CR380950
Ascomycota
Candida glabrata CBS 138 CBS138
356684
356759
+
Asn
GTT
[ENA]
¡û
>FG090100101
CR380950
Ascomycota
Candida glabrata CBS 138 CBS138
477797
477722
-
Asn
GTT
[ENA]
¡û
>FG090100155
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
954857
954784
-
Asn
GTT
[ENA]
¡û
>FG091100009
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
491814
491741
-
Asn
GTT
[ENA]
¡û
>FG091100066
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
689063
688990
-
Asn
GTT
[ENA]
¡û
Identical group No.323948 (4 seq.)
>FG090100104
CR380951
Ascomycota
Candida glabrata CBS 138 CBS138
28878
28952
+
Asn
GTT
[ENA]
¡û
>FG090100161
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
507294
507221
-
Asn
GTT
[ENA]
¡û
>FG090100168
CR380956
Ascomycota
Candida glabrata CBS 138 CBS138
450015
449942
-
Asn
GTT
[ENA]
¡û
>FG090100210
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
950163
950088
-
Asn
GTT
[ENA]
¡û
Identical group No.323949 (2 seq.)
>FG090100508
CM000437
Ascomycota
Pichia stipitis CBS 6054
1068373
1068448
+
Asn
GTT
[ENA]
¡û
>FG090100579
CP000500
Ascomycota
Pichia stipitis CBS 6054
964784
964857
+
Asn
GTT
[ENA]
¡û
Identical group No.323951 (5 seq.)
>FG090100513
CM000437
Ascomycota
Pichia stipitis CBS 6054
1719519
1719594
+
Asn
GTT
[ENA]
¡û
>FG090100535
CM000437
Ascomycota
Pichia stipitis CBS 6054
346758
346683
-
Asn
GTT
[ENA]
¡û
>FG090100537
CM000437
Ascomycota
Pichia stipitis CBS 6054
120525
120449
-
Asn
GTT
[ENA]
¡û
>FG090100586
CP000500
Ascomycota
Pichia stipitis CBS 6054
1622737
1622662
-
Asn
GTT
[ENA]
¡û
>FG091100088
CP000497
Ascomycota
Pichia stipitis CBS 6054
1196560
1196636
+
Asn
GTT
[ENA]
¡û
Identical group No.323958 (10 seq.)
>FG090800103
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
218968
219059
+
Asn
GTT
[ENA]
¡û
>FG090800114
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
1784915
1785006
+
Asn
GTT
[ENA]
¡û
>FG090800115
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2348596
2348687
+
Asn
GTT
[ENA]
¡û
>FG090800124
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
288773
288682
-
Asn
GTT
[ENA]
¡û
>FG090800130
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2272335
2272426
+
Asn
GTT
[ENA]
¡û
>FG090800170
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
276747
276656
-
Asn
GTT
[ENA]
¡û
>FG091800029
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
508883
508792
-
Asn
GTT
[ENA]
¡û
>FG091800055
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
2540511
2540602
+
Asn
GTT
[ENA]
¡û
>FG091800057
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3010695
3010789
+
Asn
GTT
[ENA]
¡û
>FG091800059
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3198219
3198128
-
Asn
GTT
[ENA]
¡û
Identical group No.340224 (5 seq.)
>FG090100619
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
2032160
2032233
+
Asn
GTT
[ENA]
¡û
>FG090100625
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
4031743
4031816
+
Asn
GTT
[ENA]
¡û
>FG090100642
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1598069
1597996
-
Asn
GTT
[ENA]
¡û
>FG090100656
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
947262
947335
+
Asn
GTT
[ENA]
¡û
>FG090100664
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1701899
1701972
+
Asn
GTT
[ENA]
¡û
Identical group No.340225 (1 seq.)
>FG090100627
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
4210126
4210053
-
Asn
GTT
[ENA]
¡û
Identical group No.352287 (6 seq.)
>FG090100420
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
762451
762526
+
Asn
GTT
[ENA]
¡û
>FG090100431
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
636019
635944
-
Asn
GTT
[ENA]
¡û
>FG090100440
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
228254
228327
+
Asn
GTT
[ENA]
¡û
>FG090100476
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1062465
1062390
-
Asn
GTT
[ENA]
¡û
>FG090100495
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
2283336
2283263
-
Asn
GTT
[ENA]
¡û
>FG090100503
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1020231
1020156
-
Asn
GTT
[ENA]
¡û
Identical group No.352288 (4 seq.)
>FG090500023
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1017744
1017652
-
Asn
GTT
[ENA]
¡û
>FU090900200
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
376198
376290
+
Asn
GTT
[ENA]
¡û
>FU090900317
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1017744
1017652
-
Asn
GTT
[ENA]
¡û
>FG091900229
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
584902
584992
+
Asn
GTT
[ENA]
¡û
Identical group No.352291 (2 seq.)
>FU090900293
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2533986
2534072
+
Asn
GTT
[ENA]
¡û
>FG091900314
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1053738
1053649
-
Asn
GTT
[ENA]
¡û
Identical group No.352326 (3 seq.)
>FG091200006
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1111137
1111045
-
Asn
GTT
[ENA]
¡û
>FG091900203
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1277557
1277654
+
Asn
GTT
[ENA]
¡û
>FG091900207
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1111136
1111046
-
Asn
GTT
[ENA]
¡û
Identical group No.363856 (2 seq.)
>FU090900075
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
912580
912677
+
Asn
GTT
[ENA]
¡û
>FU090900088
AE017356
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
408731
408828
+
Asn
GTT
[ENA]
¡û
Identical group No.373595 (1 seq.)
>FG090100069
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
284902
284975
+
Asn
GTT
[ENA]
¡û
Identical group No.373597 (1 seq.)
>FG091900286
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
2215135
2215225
+
Asn
GTT
[ENA]
¡û
Identical group No.408627 (1 seq.)
>FG090100022
AE016816
Ascomycota
Ashbya gossypii ATCC 10895
191343
191418
+
Asn
GTT
[ENA]
¡û
Identical group No.430616 (1 seq.)
>FG090100216
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
392109
392182
+
Asn
GTT
[ENA]
¡û
Identical group No.564722 (1 seq.)
>FG090100389
AL590449
Microsporidia
Encephalitozoon_cuniculi_GB-M1
17842
17770
-
Asn
GTT
[ENA]
¡û
Identical group No.586970 (1 seq.)
>FG090100381
AL590448
Microsporidia
Encephalitozoon_cuniculi_GB-M1
213588
213660
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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