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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1023185
SRR035084.30991
285602
Actinomycetota
GAT
Ile
>SRA1023476
SRR035084.106340
484425
Actinomycetota
TGG
Pro
>SRA1023493
SRR035084.110642
285602
Actinomycetota
GAT
Ile
>SRA1023514
SRR035084.114562
780803
Actinomycetota
TCC
Gly
>SRA1023634
SRR035084.139304
452897
Actinomycetota
TAC
Val
>SRA1023718
SRR035084.160050
458396
Actinomycetota
CGC
Ala
>SRA1023823
SRR035084.184670
474429
Actinomycetota
TTC
Glu
>SRA1024019
SRR035084.231317
452897
Actinomycetota
TAC
Val
>SRA1024040
SRR035084.235416
780803
Actinomycetota
TCC
Gly
>SRA1024185
SRR035084.268151
780234
Actinomycetota
GCA
Cys
>SRA1024268
SRR035084.288110
458396
Actinomycetota
CGC
Ala
>SRA1024280
SRR035084.291525
458396
Actinomycetota
CGC
Ala
>SRA1024355
SRR035084.306469
270748
Actinomycetota
CGG
Pro
>SRA1024474
SRR035084.333093
270748
Actinomycetota
CGG
Pro
>SRA1024704
SRR035084.380461
285602
Actinomycetota
GAT
Ile
>SRA1024775
SRR035084.398526
452897
Actinomycetota
TAC
Val
>SRA1024909
SRR035084.434105
285602
Actinomycetota
GAT
Ile
>SRA1025100
SRR035084.484263
458398
Actinomycetota
CTC
Glu
>SRA1025292
SRR035084.543285
285602
Actinomycetota
GAT
Ile
>SRA1025334
SRR035084.554868
87226
Actinomycetota
GGA
Ser
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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