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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170518057
CEWE01085089
435870
Alphaproteobacteria
GCA
Cys
>WENV170516996
CEWE01002401
306070
Alphaproteobacteria
CCA
Trp
>WENV170519037
CEWE01195817
306070
Alphaproteobacteria
CCA
Trp
>WENV170517058
CEWE01006421
147089
Alphaproteobacteria
ACG
Arg
>WENV170517154
CEWE01014101
113700
Alphaproteobacteria
>WENV170518754
CEWE01159769
144964
Alphaproteobacteria
TGG
Pro
>WENV170518286
CEWE01110653
23468
Alphaproteobacteria
GCT
Ser
>WENV170519155
CEWE01209348
176908
Alphaproteobacteria
GTC
Asp
>WENV170519459
CEWE01238389
338282
Alphaproteobacteria
GTT
Asn
>WENV170518011
CEWE01080926
339454
Alphaproteobacteria
>WENV170517992
CEWE01079288
339454
Alphaproteobacteria
>WENV170520240
CEWE01417109
339722
Alphaproteobacteria
TTG
Gln
>WENV170519400
CEWE01233564
252375
Alphaproteobacteria
GTT
Asn
>WENV170519852
CEWE01260853
192195
Alphaproteobacteria
GTC
Asp
>WENV170518252
CEWE01105527
167926
Alphaproteobacteria
CAT
Met
>WENV170518136
CEWE01091623
167926
Alphaproteobacteria
CAT
Met
>WENV170519763
CEWE01256788
254522
Alphaproteobacteria
GAA
Phe
>WENV170518646
CEWE01147694
369678
Alphaproteobacteria
GGT
Thr
>WENV170519851
CEWE01260853
289664
Alphaproteobacteria
TAC
Val
>WENV170520662
CEWE01549647
430481
Alphaproteobacteria
GCA
Cys
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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