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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170768094
LXNH01011830
23468
Alphaproteobacteria
GCT
Ser
>WENV170767523
LXNH01002376
176908
Alphaproteobacteria
GTC
Asp
>WENV170767524
LXNH01002376
176908
Alphaproteobacteria
GTC
Asp
>WENV170767584
LXNH01003180
199776
Alphaproteobacteria
CGG
Pro
>WENV170767419
LXNH01001412
338282
Alphaproteobacteria
GTT
Asn
>WENV170770277
LXNH01096069
338282
Alphaproteobacteria
GTT
Asn
>WENV170770631
LXNH01115875
338282
Alphaproteobacteria
GTT
Asn
>WENV170768539
LXNH01022785
254188
Alphaproteobacteria
CCA
Trp
>WENV170770000
LXNH01080744
254188
Alphaproteobacteria
CCA
Trp
>WENV170769907
LXNH01075903
182651
Alphaproteobacteria
GTC
Asp
>WENV170768699
LXNH01027469
340288
Alphaproteobacteria
GCC
Gly
>WENV170769924
LXNH01076419
249928
Alphaproteobacteria
TAC
Val
>WENV170769430
LXNH01054240
249928
Alphaproteobacteria
TAC
Val
>WENV170768907
LXNH01034488
249928
Alphaproteobacteria
TAC
Val
>WENV170770481
LXNH01106896
192195
Alphaproteobacteria
GTC
Asp
>WENV170769418
LXNH01053871
192195
Alphaproteobacteria
GTC
Asp
>WENV170768530
LXNH01022592
192195
Alphaproteobacteria
GTC
Asp
>WENV170767684
LXNH01004434
192195
Alphaproteobacteria
GTC
Asp
>WENV170768347
LXNH01017435
342876
Alphaproteobacteria
GAC
Val
>WENV170767790
LXNH01005934
341164
Alphaproteobacteria
GCC
Gly
>WENV170769795
LXNH01070524
27479
Alphaproteobacteria
CGA
Ser
>WENV170768689
LXNH01027036
27479
Alphaproteobacteria
CGA
Ser
>WENV170767289
LXNH01000370
59164
Alphaproteobacteria
GAG
Leu
>WENV170770582
LXNH01113355
280207
Alphaproteobacteria
TGC
Ala
>WENV170770121
LXNH01087291
163860
Alphaproteobacteria
GGG
Pro
>WENV170769962
LXNH01078319
163860
Alphaproteobacteria
GGG
Pro
>WENV170768600
LXNH01024440
163860
Alphaproteobacteria
GGG
Pro
>WENV170770463
LXNH01105760
241518
Alphaproteobacteria
CCA
Trp
>WENV170770591
LXNH01113906
319925
Alphaproteobacteria
TGT
Thr
>WENV170769669
LXNH01064527
319925
Alphaproteobacteria
TGT
Thr
>WENV170769030
LXNH01039661
319925
Alphaproteobacteria
TGT
Thr
>WENV170767485
LXNH01001983
319925
Alphaproteobacteria
TGT
Thr
>WENV170767263
LXNH01000247
266073
Alphaproteobacteria
TTT
Lys
>WENV170769813
LXNH01071513
339606
Alphaproteobacteria
>WENV170768342
LXNH01017261
29831
Alphaproteobacteria
TGA
Ser
>WENV170769431
LXNH01054286
150356
Alphaproteobacteria
GTC
Asp
>WENV170768172
LXNH01013347
150356
Alphaproteobacteria
GTC
Asp
>WENV170767766
LXNH01005617
150356
Alphaproteobacteria
GTC
Asp
>WENV170769598
LXNH01061445
268598
Alphaproteobacteria
GAA
Phe
>WENV170769400
LXNH01053401
237155
Alphaproteobacteria
>WENV170767445
LXNH01001623
237155
Alphaproteobacteria
>WENV170769737
LXNH01067471
388882
Alphaproteobacteria
GCC
Gly
>WENV170769447
LXNH01054683
388882
Alphaproteobacteria
GCC
Gly
>WENV170767380
LXNH01001045
388882
Alphaproteobacteria
GCC
Gly
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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