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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV180108256
OAPH01076952
306070
Alphaproteobacteria
CCA
Trp
>WENV180107792
OAPH01007975
23468
Alphaproteobacteria
GCT
Ser
>WENV180107856
OAPH01013982
282595
Alphaproteobacteria
CCA
Trp
>WENV180108070
OAPH01038796
148353
Alphaproteobacteria
CAT
Met
>WENV180108089
OAPH01041588
338282
Alphaproteobacteria
GTT
Asn
>WENV180107697
OAPH01002363
236134
Alphaproteobacteria
TAC
Val
>WENV180108644
OAPH01223154
340288
Alphaproteobacteria
GCC
Gly
>WENV180108188
OAPH01061563
147334
Alphaproteobacteria
CAT
Met
>WENV180108468
OAPH01130217
192195
Alphaproteobacteria
GTC
Asp
>WENV180108694
OAPH01251009
167926
Alphaproteobacteria
CAT
Met
>WENV180107785
OAPH01007632
241518
Alphaproteobacteria
CCA
Trp
>WENV180107712
OAPH01002780
319925
Alphaproteobacteria
TGT
Thr
>WENV180107851
OAPH01013698
266073
Alphaproteobacteria
TTT
Lys
>WENV180107909
OAPH01018704
162524
Alphaproteobacteria
ACG
Arg
>WENV180108036
OAPH01034964
369678
Alphaproteobacteria
GGT
Thr
>WENV180107921
OAPH01019272
412424
Alphaproteobacteria
TCC
Gly
>WENV180107737
OAPH01004398
412181
Alphaproteobacteria
CTG
Gln
>WENV180107687
OAPH01002024
237574
Alphaproteobacteria
TGT
Thr
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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