tRNA genes clustered and arranged according to each identical group

454 Sequencing (SRP001806)

Anticodon = TCC

HIT: 26 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.1712 (1 seq.)
>SRA1025650 SRR035085.56827 454 Sequencing (SRP001806) 401 495 + Gly TCC [SRA]
Identical group No.272250 (17 seq.)
>W131157537 AQSK01000158 candidate division KSB1 candidate division KSB1 bacterium SCGC AAA252-E13 [AQSK] 349 425 + Gly TCC [ENA]
>W131157542 AQSK01000158 candidate division KSB1 candidate division KSB1 bacterium SCGC AAA252-E13 [AQSK] 25839 25763 - Gly TCC [ENA]
>W131192921 ASNG01000014 candidate division KSB1 candidate division KSB1 bacterium SCGC AAA252-O02 [ASNG] 34344 34268 - Gly TCC [ENA]
>W131192945 ASNH01000031 candidate division KSB1 candidate division KSB1 bacterium SCGC AAA255-C20 [ASNH] 20599 20523 - Gly TCC [ENA]
>W131192974 ASNI01000012 candidate division KSB1 candidate division KSB1 bacterium SCGC AAA252-N17 [ASNI] 320 396 + Gly TCC [ENA]
>W131193009 ASNJ01000032 candidate division KSB1 candidate division KSB1 bacterium SCGC AAA252-N11 [ASNJ] 16045 15969 - Gly TCC [ENA]
>W131193024 ASNK01000023 candidate division KSB1 candidate division KSB1 bacterium SCGC AAA252-E20 [ASNK] 553 629 + Gly TCC [ENA]
>W131193183 ASNT01000007 candidate division KSB1 candidate division KSB1 bacterium SCGC AAA252-P10 [ASNT] 432 508 + Gly TCC [ENA]
>W141139686 AWNX01000034 Cloacimonetes Cloacimonetes bacterium JGI OTU-1 [AWNX] 431 507 + Gly TCC [ENA]
>WENV170624729 FUWD013185793 [FUWD] metagenome; unknown 961 885 - Gly TCC [ENA]
>WENV170633009 FUWD013389969 [FUWD] metagenome; unknown 961 885 - Gly TCC [ENA]
>SRA1025510 SRR035085.28007 454 Sequencing (SRP001806) 344 268 - Gly TCC [SRA]
>SRA1033959 SRR035088.424048 454 Sequencing (SRP001809) 107 31 - Gly TCC [SRA]
>SRA1035106 SRR035089.238408 454 Sequencing (SRP001810) 300 376 + Gly TCC [SRA]
>SRA1036056 SRR035089.435213 454 Sequencing (SRP001810) 160 84 - Gly TCC [SRA]
>SRA1047717 SRR035094.27413 454 Sequencing (SRP001815) 154 78 - Gly TCC [SRA]
>SRA1047761 SRR035094.36244 454 Sequencing (SRP001815) 154 78 - Gly TCC [SRA]
Identical group No.272257 (7 seq.)
>WENV170600115 FUWD010108391 [FUWD] metagenome; unknown 748 672 - Gly TCC [ENA]
>WENV170600155 FUWD010111227 [FUWD] metagenome; unknown 367 291 - Gly TCC [ENA]
>WENV170618339 FUWD012963419 [FUWD] metagenome; unknown 668 592 - Gly TCC [ENA]
>SRA1019299 SRR035082.431787 454 Sequencing (SRP001803) 272 348 + Gly TCC [SRA]
>SRA1025529 SRR035085.34324 454 Sequencing (SRP001806) 247 323 + Gly TCC [SRA]
>SRA1044839 SRR035092.354917 454 Sequencing (SRP001813) 56 132 + Gly TCC [SRA]
>SRA1048342 SRR035094.151521 454 Sequencing (SRP001815) 377 301 - Gly TCC [SRA]
Identical group No.272258 (1 seq.)
>SRA1025531 SRR035085.34507 454 Sequencing (SRP001806) 296 370 + Gly TCC [SRA]
Identical group No.272491 (11 seq.)
>WENV170603335 FUWD010302736 [FUWD] metagenome; unknown 373 449 + Gly TCC [ENA]
>WENV170619085 FUWD012999027 [FUWD] metagenome; unknown 498 574 + Gly TCC [ENA]
>WENV170619087 FUWD012999028 [FUWD] metagenome; unknown 56 132 + Gly TCC [ENA]
>WENV170699126 LGVF01485599 [LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge 623 699 + Gly TCC [ENA]
>SRA1026832 SRR035085.305881 454 Sequencing (SRP001806) 143 217 + Gly TCC [SRA]
>SRA1029552 SRR035087.144754 454 Sequencing (SRP001808) 383 459 + Gly TCC [SRA]
>SRA1029968 SRR035087.209243 454 Sequencing (SRP001808) 35 111 + Gly TCC [SRA]
>SRA1035014 SRR035089.218276 454 Sequencing (SRP001810) 337 413 + Gly TCC [SRA]
>SRA1036296 SRR035089.489780 454 Sequencing (SRP001810) 56 132 + Gly TCC [SRA]
>SRA1047851 SRR035094.54860 454 Sequencing (SRP001815) 118 192 + Gly TCC [SRA]
>SRA1048034 SRR035094.96599 454 Sequencing (SRP001815) 118 192 + Gly TCC [SRA]
Identical group No.453224 (5 seq.)
>WENV170611627 FUWD012361975 [FUWD] metagenome; unknown 192 119 - Gly TCC [ENA]
>SRA1018701 SRR035082.334753 454 Sequencing (SRP001803) 192 119 - Gly TCC [SRA]
>SRA1025542 SRR035085.36027 454 Sequencing (SRP001806) 296 369 + Gly TCC [SRA]
>SRA1026128 SRR035085.148570 454 Sequencing (SRP001806) 296 369 + Gly TCC [SRA]
>SRA1048774 SRR035094.245628 454 Sequencing (SRP001815) 111 184 + Gly TCC [SRA]
Identical group No.453234 (52 seq.)
>W1710821934 LKUC01000078 Betaproteobacteria Smithella sp. SDB (LKUC) 2146 2221 + Gly TCC [ENA]
>W1711136300 LVAB01000033 Deltaproteobacteria Syntrophobacterales bacterium Delta_03 (LVAB) 2107 2032 - Gly TCC [ENA]
>W1711297428 MAEO01000109 Betaproteobacteria Smithella sp. M82 (MAEO) 42043 41968 - Gly TCC [ENA]
>W1711410795 MGQN01000033 Deltaproteobacteria Deltaproteobacteria bacterium RBG_16_44_11 (MGQN) 10837 10762 - Gly TCC [ENA]
>W1711410998 MGQV01000110 Deltaproteobacteria Deltaproteobacteria bacterium RBG_16_58_17 (MGQV) 38846 38771 - Gly TCC [ENA]
>W1711423145 MICJ01000069 Firmicutes Syntrophobacterales bacterium GWC2_56_13 (MICJ) 30423 30348 - Gly TCC [ENA]
>W1711423173 MICK01000114 Firmicutes Syntrophobacterales bacterium GWF2_56_9 (MICK) 31956 31881 - Gly TCC [ENA]
>W1711423215 MICN01000089 Bacteroidetes Syntrophus sp. GWC2_56_31 (MICN) 4694 4619 - Gly TCC [ENA]
>W1711423254 MICO01000488 Bacteroidetes Syntrophus sp. RIFOXYC2_FULL_54_9 (MICO) 2724 2799 + Gly TCC [ENA]
>W1711585325 MNZP01000003 Deltaproteobacteria Syntrophaceae bacterium CG2_30_49_12 (MNZP) 157 232 + Gly TCC [ENA]
>W1711585396 MNZQ01000116 Deltaproteobacteria Syntrophaceae bacterium CG2_30_58_14 (MNZQ) 34300 34225 - Gly TCC [ENA]
>WENV180275115 OBHS01010926 [OBHS] metagenome; freshwater sediment 109 184 + Gly TCC [ENA]
>WENV180317896 OBKL01001339 [OBKL] soil metagenome; Alaskan Permafrost 444 519 + Gly TCC [ENA]
>WENV181230450 OFEK01000974 [OFEK] activated sludge metagenome; Anaerobic digester 536 461 - Gly TCC [ENA]
>WENV181231085 OFEK01009355 [OFEK] activated sludge metagenome; Anaerobic digester 439 364 - Gly TCC [ENA]
>W141137374 AWGX01000906 Deltaproteobacteria Smithella sp. ME-1 [AWGX] 2121 2196 + Gly TCC [ENA]
>WENV181412622 OGCK01002908 [OGCK] hot springs metagenome; hot spring sediment 1678 1603 - Gly TCC [ENA]
>W141170236 AXXO01000006 Deltaproteobacteria delta proteobacterium JGI 0000059-O15 [AXXO] 6966 7041 + Gly TCC [ENA]
>WENV183514937 OMKS01038277 [OMKS] sediment metagenome; hot spring sediment 137 62 - Gly TCC [ENA]
>WENV183701643 PDVH01000066 [PDVH] alkali sediment metagenome; glacial lake sediment 29196 29121 - Gly TCC [ENA]
>WENV183702780 PDVJ01000087 [PDVJ] alkali sediment metagenome; glacial lake sediment 1113 1188 + Gly TCC [ENA]
>WENV170616475 FUWD012888808 [FUWD] metagenome; unknown 570 495 - Gly TCC [ENA]
>WENV170616485 FUWD012889113 [FUWD] metagenome; unknown 291 216 - Gly TCC [ENA]
>WENV170616489 FUWD012889114 [FUWD] metagenome; unknown 221 146 - Gly TCC [ENA]
>WENV170616493 FUWD012889115 [FUWD] metagenome; unknown 170 95 - Gly TCC [ENA]
>WENV170668606 LAHQ01004251 [LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over 1647 1572 - Gly TCC [ENA]
>WENV170677492 LDZT01005749 [LDZT] terrestrial metagenome; oil reservoir sample SB1 1300 1375 + Gly TCC [ENA]
>WENV170715237 LNQE01000941 [LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch 37135 37060 - Gly TCC [ENA]
>WENV170970987 MTKX01000876 [MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant 13845 13920 + Gly TCC [ENA]
>WENV170971242 MTKX01002851 [MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant 182 107 - Gly TCC [ENA]
>WENV170972840 MTKY01002940 [MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant 3398 3323 - Gly TCC [ENA]
>WENV170975838 MTKZ01002620 [MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant 37458 37533 + Gly TCC [ENA]
>WENV170976594 MTKZ01009700 [MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant 39162 39087 - Gly TCC [ENA]
>W141812387 JQDQ01000156 Deltaproteobacteria Smithella sp. SCADC [JQDQ] 25356 25281 - Gly TCC [ENA]
>W1910744700 MICL01000040 Deltaproteobacteria Syntrophobacterales bacterium RBG_19FT_COMBO_59_10 (MICL) 10093 10168 + Gly TCC [ENA]
>SRA1025574 SRR035085.40777 454 Sequencing (SRP001806) 313 388 + Gly TCC [SRA]
>SRA1025794 SRR035085.84794 454 Sequencing (SRP001806) 313 388 + Gly TCC [SRA]
>SRA1025846 SRR035085.93636 454 Sequencing (SRP001806) 291 366 + Gly TCC [SRA]
>SRA1026417 SRR035085.203625 454 Sequencing (SRP001806) 222 297 + Gly TCC [SRA]
>SRA1026567 SRR035085.229003 454 Sequencing (SRP001806) 131 56 - Gly TCC [SRA]
>SRA1029383 SRR035087.119471 454 Sequencing (SRP001808) 170 95 - Gly TCC [SRA]
>SRA1029434 SRR035087.126652 454 Sequencing (SRP001808) 308 233 - Gly TCC [SRA]
>SRA1029719 SRR035087.169993 454 Sequencing (SRP001808) 37 112 + Gly TCC [SRA]
>SRA1030633 SRR035087.307709 454 Sequencing (SRP001808) 430 355 - Gly TCC [SRA]
>SRA1032052 SRR035087.541045 454 Sequencing (SRP001808) 228 303 + Gly TCC [SRA]
>SRA1035326 SRR035089.284192 454 Sequencing (SRP001810) 291 216 - Gly TCC [SRA]
>SRA1035948 SRR035089.411533 454 Sequencing (SRP001810) 292 217 - Gly TCC [SRA]
>SRA1036139 SRR035089.453315 454 Sequencing (SRP001810) 212 287 + Gly TCC [SRA]
>W1511185623 JMED01000502 Deltaproteobacteria Smithella sp. SC_K08D17 [JMED] 622 547 - Gly TCC [ENA]
>W1610685896 LKUC01000078 Betaproteobacteria Smithella sp. SDB (LKUC) 2146 2221 + Gly TCC [ENA]
>W1610947420 LVAB01000033 Deltaproteobacteria Syntrophobacterales bacterium Delta_03 (LVAB) 2107 2032 - Gly TCC [ENA]
>W1611052311 MAEO01000109 Betaproteobacteria Smithella sp. M82 (MAEO) 42043 41968 - Gly TCC [ENA]
Identical group No.453240 (1 seq.)
>SRA1025605 SRR035085.48433 454 Sequencing (SRP001806) 305 230 - Gly TCC [SRA]
Identical group No.453241 (28 seq.)
>W131157822 AQSW01000083 candidate division OP9 candidate division OP9 bacterium SCGC AB-164-A22 [AQSW] 29381 29456 + Gly TCC [ENA]
>W1711398135 MEYG01000019 CandidatusAtribacteria Candidatus Atribacteria bacterium RBG_16_35_8 (MEYG) 4120 4195 + Gly TCC [ENA]
>WENV170017558 BARU01001111 [BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula 1459 1384 - Gly TCC [ENA]
>WENV170018191 BARV01023695 [BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula 497 422 - Gly TCC [ENA]
>WENV170601159 FUWD010159189 [FUWD] metagenome; unknown 70 145 + Gly TCC [ENA]
>WENV170605150 FUWD010454585 [FUWD] metagenome; unknown 135 210 + Gly TCC [ENA]
>WENV170618824 FUWD012988248 [FUWD] metagenome; unknown 427 502 + Gly TCC [ENA]
>WENV170626570 FUWD013225773 [FUWD] metagenome; unknown 163 238 + Gly TCC [ENA]
>WENV170677257 LDZT01004572 [LDZT] terrestrial metagenome; oil reservoir sample SB1 10044 10119 + Gly TCC [ENA]
>WENV170694470 LGVD01064148 [LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at 752 677 - Gly TCC [ENA]
>WENV170695166 LGVE01055862 [LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge 419 344 - Gly TCC [ENA]
>WENV170697661 LGVF01170491 [LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge 3870 3795 - Gly TCC [ENA]
>W1910702392 MEYH01000056 CandidatusAtribacteria Candidatus Atribacteria bacterium RBG_19FT_COMBO_35_14 (MEYH) 6991 6916 - Gly TCC [ENA]
>W1910870304 NCRO01000049 CandidatusAtribacteria Candidatus Atribacteria bacterium RS-JS1 (NCRO) 2757 2832 + Gly TCC [ENA]
>SRA1019562 SRR035082.476456 454 Sequencing (SRP001803) 308 383 + Gly TCC [SRA]
>SRA1025608 SRR035085.48859 454 Sequencing (SRP001806) 60 135 + Gly TCC [SRA]
>SRA1029227 SRR035087.94717 454 Sequencing (SRP001808) 430 355 - Gly TCC [SRA]
>SRA1029713 SRR035087.169386 454 Sequencing (SRP001808) 260 185 - Gly TCC [SRA]
>SRA1030318 SRR035087.262589 454 Sequencing (SRP001808) 91 166 + Gly TCC [SRA]
>SRA1030607 SRR035087.303901 454 Sequencing (SRP001808) 148 73 - Gly TCC [SRA]
>SRA1030675 SRR035087.312323 454 Sequencing (SRP001808) 360 285 - Gly TCC [SRA]
>SRA1030698 SRR035087.316065 454 Sequencing (SRP001808) 188 113 - Gly TCC [SRA]
>SRA1030994 SRR035087.358336 454 Sequencing (SRP001808) 260 185 - Gly TCC [SRA]
>SRA1034909 SRR035089.196324 454 Sequencing (SRP001810) 70 145 + Gly TCC [SRA]
>SRA1035129 SRR035089.242826 454 Sequencing (SRP001810) 139 214 + Gly TCC [SRA]
>SRA1050629 SRR035095.309692 454 Sequencing (SRP001816) 322 397 + Gly TCC [SRA]
>W1610613585 LGGA01000005 CandidatusAtribacteria Atribacteria bacterium 34_128 (LGGA) 10044 10119 + Gly TCC [ENA]
>W1710734757 LGGA01000005 CandidatusAtribacteria Atribacteria bacterium 34_128 (LGGA) 10044 10119 + Gly TCC [ENA]
Identical group No.453308 (4 seq.)
>WENV170622533 FUWD013108145 [FUWD] metagenome; unknown 261 336 + Gly TCC [ENA]
>WENV170630754 FUWD013322339 [FUWD] metagenome; unknown 261 336 + Gly TCC [ENA]
>SRA1025920 SRR035085.110687 454 Sequencing (SRP001806) 294 369 + Gly TCC [SRA]
>SRA1033167 SRR035088.188528 454 Sequencing (SRP001809) 253 328 + Gly TCC [SRA]
Identical group No.453391 (1 seq.)
>SRA1026382 SRR035085.198331 454 Sequencing (SRP001806) 77 150 + Gly TCC [SRA]
Identical group No.453395 (1 seq.)
>SRA1026434 SRR035085.206387 454 Sequencing (SRP001806) 280 207 - Gly TCC [SRA]
Identical group No.654245 (2 seq.)
>WENV170599260 FUWD010069059 [FUWD] metagenome; unknown 638 712 + Gly TCC [ENA]
>SRA1025565 SRR035085.39923 454 Sequencing (SRP001806) 391 317 - Gly TCC [SRA]
Identical group No.654288 (2 seq.)
>WENV180044111 LQAJ01005076 [LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that 332 404 + Gly TCC [ENA]
>SRA1025852 SRR035085.94429 454 Sequencing (SRP001806) 394 465 + Gly TCC [SRA]
Identical group No.654352 (1 seq.)
>SRA1026363 SRR035085.193567 454 Sequencing (SRP001806) 157 230 + Gly TCC [SRA]
Identical group No.654366 (1 seq.)
>SRA1026437 SRR035085.207083 454 Sequencing (SRP001806) 35 106 + Gly TCC [SRA]
Identical group No.654385 (1 seq.)
>SRA1026575 SRR035085.231825 454 Sequencing (SRP001806) 98 172 + Gly TCC [SRA]
Identical group No.654395 (2 seq.)
>WENV170612548 FUWD012632799 [FUWD] metagenome; unknown 204 132 - Gly TCC [ENA]
>SRA1026653 SRR035085.250359 454 Sequencing (SRP001806) 367 295 - Gly TCC [SRA]
Identical group No.779776 (1 seq.)
>SRA1025518 SRR035085.31616 454 Sequencing (SRP001806) 274 204 - Gly TCC [SRA]
Identical group No.779794 (1 seq.)
>SRA1025710 SRR035085.70004 454 Sequencing (SRP001806) 216 144 - Gly TCC [SRA]
Identical group No.779797 (6 seq.)
>WENV170613141 FUWD012782217 [FUWD] metagenome; unknown 426 353 - Gly TCC [ENA]
>SRA1018231 SRR035082.258772 454 Sequencing (SRP001803) 210 137 - Gly TCC [SRA]
>SRA1019132 SRR035082.407729 454 Sequencing (SRP001803) 424 351 - Gly TCC [SRA]
>SRA1025787 SRR035085.83520 454 Sequencing (SRP001806) 154 81 - Gly TCC [SRA]
>SRA1030118 SRR035087.229930 454 Sequencing (SRP001808) 143 70 - Gly TCC [SRA]
>SRA1031419 SRR035087.427400 454 Sequencing (SRP001808) 313 240 - Gly TCC [SRA]
Identical group No.779824 (1 seq.)
>SRA1026212 SRR035085.164050 454 Sequencing (SRP001806) 221 148 - Gly TCC [SRA]
Identical group No.779826 (3 seq.)
>WENV170611884 FUWD012429707 [FUWD] metagenome; unknown 428 499 + Gly TCC [ENA]
>SRA1026283 SRR035085.179223 454 Sequencing (SRP001806) 439 510 + Gly TCC [SRA]
>SRA1026443 SRR035085.207594 454 Sequencing (SRP001806) 438 509 + Gly TCC [SRA]
Identical group No.779836 (1 seq.)
>SRA1026464 SRR035085.212022 454 Sequencing (SRP001806) 136 209 + Gly TCC [SRA]
Identical group No.779837 (2 seq.)
>WENV170611886 FUWD012430152 [FUWD] metagenome; unknown 127 56 - Gly TCC [ENA]
>SRA1026467 SRR035085.212302 454 Sequencing (SRP001806) 354 283 - Gly TCC [SRA]
Identical group No.779846 (1 seq.)
>SRA1026607 SRR035085.239220 454 Sequencing (SRP001806) 229 156 - Gly TCC [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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