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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TCG
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272265 (20 seq.)
>W131157527
AQSK01000112
Unclassified
Cloacimonetes bacterium SCGC AAA252-E13 KSB1 bacterium SCGC AAA252-E13 [AQSK]
10829
10753
-
Arg
TCG
[ENA]
¡û
>W131157610
AQSM01000086
Unclassified
Cloacimonetes bacterium SCGC AAA252-N14 KSB1 bacterium SCGC AAA252-N14 [AQSM]
10216
10140
-
Arg
TCG
[ENA]
¡û
>W131192147
ASKO01000053
Unclassified
Cloacimonetes bacterium SCGC AAA252-M08 KSB1 bacterium SCGC AAA252-M08 [ASKO]
263
339
+
Arg
TCG
[ENA]
¡û
>W131192157
ASKP01000060
Unclassified
Cloacimonetes bacterium SCGC AAA252-L05 KSB1 bacterium SCGC AAA252-L05 [ASKP]
4346
4270
-
Arg
TCG
[ENA]
¡û
>W131192185
ASKQ01000098
Unclassified
Cloacimonetes bacterium SCGC AAA252-O17 KSB1 bacterium SCGC AAA252-O17 [ASKQ]
1297
1373
+
Arg
TCG
[ENA]
¡û
>W131192965
ASNI01000001
Unclassified
Cloacimonetes bacterium SCGC AAA252-N17 KSB1 bacterium SCGC AAA252-N17 [ASNI]
10392
10316
-
Arg
TCG
[ENA]
¡û
>W131193153
ASNQ01000061
Unclassified
Cloacimonetes bacterium SCGC AAA252-K16 KSB1 bacterium SCGC AAA252-K16 [ASNQ]
256
332
+
Arg
TCG
[ENA]
¡û
>W131193158
ASNR01000019
Unclassified
Cloacimonetes bacterium SCGC AAA252-L13 KSB1 bacterium SCGC AAA252-L13 [ASNR]
5724
5800
+
Arg
TCG
[ENA]
¡û
>W131193201
ASNT01000040
Unclassified
Cloacimonetes bacterium SCGC AAA252-P10 KSB1 bacterium SCGC AAA252-P10 [ASNT]
10384
10308
-
Arg
TCG
[ENA]
¡û
>W141139682
AWNX01000021
Unclassified
Cloacimonetes bacterium JGI OTU-1 [AWNX]
10640
10564
-
Arg
TCG
[ENA]
¡û
>WENV170624764
FUWD013186367
[FUWD] metagenome; unknown
1206
1130
-
Arg
TCG
[ENA]
¢þ
>WENV170633040
FUWD013390449
[FUWD] metagenome; unknown
1206
1130
-
Arg
TCG
[ENA]
¢þ
>SRA1025550
SRR035085.37500
454 Sequencing (SRP001806)
401
325
-
Arg
TCG
[SRA]
>SRA1025886
SRR035085.102782
454 Sequencing (SRP001806)
402
326
-
Arg
TCG
[SRA]
>SRA1025972
SRR035085.119514
454 Sequencing (SRP001806)
403
327
-
Arg
TCG
[SRA]
>SRA1031126
SRR035087.377529
454 Sequencing (SRP001808)
274
198
-
Arg
TCG
[SRA]
>SRA1032700
SRR035088.82055
454 Sequencing (SRP001809)
91
15
-
Arg
TCG
[SRA]
>SRA1033378
SRR035088.239777
454 Sequencing (SRP001809)
149
73
-
Arg
TCG
[SRA]
>SRA1048754
SRR035094.241714
454 Sequencing (SRP001815)
32
108
+
Arg
TCG
[SRA]
>SRA1048869
SRR035094.267796
454 Sequencing (SRP001815)
32
108
+
Arg
TCG
[SRA]
Identical group No.272297 (1 seq.)
>SRA1025738
SRR035085.73644
454 Sequencing (SRP001806)
5
81
+
Arg
TCG
[SRA]
Identical group No.272300 (7 seq.)
>WENV170621492
FUWD013061040
[FUWD] metagenome; unknown
1638
1564
-
Arg
TCG
[ENA]
¢þ
>WENV170629674
FUWD013277251
[FUWD] metagenome; unknown
1638
1564
-
Arg
TCG
[ENA]
¢þ
>SRA1025744
SRR035085.74740
454 Sequencing (SRP001806)
311
237
-
Arg
TCG
[SRA]
>SRA1025947
SRR035085.114996
454 Sequencing (SRP001806)
335
261
-
Arg
TCG
[SRA]
>SRA1042195
SRR035091.352397
454 Sequencing (SRP001812)
157
83
-
Arg
TCG
[SRA]
>SRA1042317
SRR035091.371473
454 Sequencing (SRP001812)
402
476
+
Arg
TCG
[SRA]
>SRA1044190
SRR035092.238943
454 Sequencing (SRP001813)
162
236
+
Arg
TCG
[SRA]
Identical group No.272351 (7 seq.)
>W1710798584
LJTR01000233
Planctomycetota
Phycisphaerae bacterium SG8_4 [LJTR]
3471
3396
-
Arg
TCG
[ENA]
¡û
>WENV181413813
OGCK01142725
[OGCK] hot springs metagenome; hot spring sediment
337
413
+
Arg
TCG
[ENA]
¢þ
>WENV183514694
OMKS01028152
[OMKS] sediment metagenome; hot spring sediment
270
345
+
Arg
TCG
[ENA]
¢þ
>WENV170017883
BARU01036979
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
155
80
-
Arg
TCG
[ENA]
¢þ
>WENV170018213
BARV01025848
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
465
540
+
Arg
TCG
[ENA]
¢þ
>SRA1026067
SRR035085.135785
454 Sequencing (SRP001806)
144
69
-
Arg
TCG
[SRA]
>W1610662541
LJTR01000233
Planctomycetota
Phycisphaerae bacterium SG8_4 [LJTR]
3471
3396
-
Arg
TCG
[ENA]
¡û
Identical group No.272371 (4 seq.)
>WENV170605053
FUWD010444611
[FUWD] metagenome; unknown
322
398
+
Arg
TCG
[ENA]
¢þ
>SRA1026213
SRR035085.164241
454 Sequencing (SRP001806)
239
315
+
Arg
TCG
[SRA]
>SRA1026420
SRR035085.203766
454 Sequencing (SRP001806)
238
314
+
Arg
TCG
[SRA]
>SRA1026636
SRR035085.246078
454 Sequencing (SRP001806)
129
53
-
Arg
TCG
[SRA]
Identical group No.272400 (1 seq.)
>SRA1026397
SRR035085.201219
454 Sequencing (SRP001806)
157
231
+
Arg
TCG
[SRA]
Identical group No.272401 (6 seq.)
>WENV170601162
FUWD010159189
[FUWD] metagenome; unknown
349
425
+
Arg
TCG
[ENA]
¢þ
>SRA1026400
SRR035085.201976
454 Sequencing (SRP001806)
428
352
-
Arg
TCG
[SRA]
>SRA1031826
SRR035087.495309
454 Sequencing (SRP001808)
152
228
+
Arg
TCG
[SRA]
>SRA1034912
SRR035089.196324
454 Sequencing (SRP001810)
349
425
+
Arg
TCG
[SRA]
>SRA1035872
SRR035089.392884
454 Sequencing (SRP001810)
291
215
-
Arg
TCG
[SRA]
>SRA1036444
SRR035089.525036
454 Sequencing (SRP001810)
89
165
+
Arg
TCG
[SRA]
Identical group No.272434 (1 seq.)
>SRA1026569
SRR035085.229938
454 Sequencing (SRP001806)
45
118
+
Arg
TCG
[SRA]
Identical group No.272449 (23 seq.)
>WENV181413199
OGCK01038251
[OGCK] hot springs metagenome; hot spring sediment
853
929
+
Arg
TCG
[ENA]
¢þ
>WENV170616588
FUWD012892690
[FUWD] metagenome; unknown
15
91
+
Arg
TCG
[ENA]
¢þ
>WENV170617548
FUWD012929501
[FUWD] metagenome; unknown
109
185
+
Arg
TCG
[ENA]
¢þ
>WENV170620355
FUWD013030264
[FUWD] metagenome; unknown
1996
1920
-
Arg
TCG
[ENA]
¢þ
>WENV170624202
FUWD013177659
[FUWD] metagenome; unknown
348
272
-
Arg
TCG
[ENA]
¢þ
>WENV170625247
FUWD013194035
[FUWD] metagenome; unknown
2626
2702
+
Arg
TCG
[ENA]
¢þ
>WENV170628492
FUWD013247842
[FUWD] metagenome; unknown
1996
1920
-
Arg
TCG
[ENA]
¢þ
>WENV170632485
FUWD013383366
[FUWD] metagenome; unknown
348
272
-
Arg
TCG
[ENA]
¢þ
>WENV170633492
FUWD013396979
[FUWD] metagenome; unknown
2626
2702
+
Arg
TCG
[ENA]
¢þ
>SRA1017972
SRR035082.223176
454 Sequencing (SRP001803)
380
304
-
Arg
TCG
[SRA]
>SRA1018286
SRR035082.269545
454 Sequencing (SRP001803)
15
91
+
Arg
TCG
[SRA]
>SRA1018874
SRR035082.361764
454 Sequencing (SRP001803)
241
165
-
Arg
TCG
[SRA]
>SRA1026645
SRR035085.248989
454 Sequencing (SRP001806)
237
161
-
Arg
TCG
[SRA]
>SRA1029242
SRR035087.96635
454 Sequencing (SRP001808)
294
370
+
Arg
TCG
[SRA]
>SRA1029647
SRR035087.156066
454 Sequencing (SRP001808)
139
63
-
Arg
TCG
[SRA]
>SRA1029823
SRR035087.187552
454 Sequencing (SRP001808)
310
234
-
Arg
TCG
[SRA]
>SRA1034567
SRR035089.124575
454 Sequencing (SRP001810)
148
72
-
Arg
TCG
[SRA]
>SRA1034574
SRR035089.126691
454 Sequencing (SRP001810)
274
350
+
Arg
TCG
[SRA]
>SRA1035940
SRR035089.409818
454 Sequencing (SRP001810)
142
66
-
Arg
TCG
[SRA]
>SRA1048204
SRR035094.128844
454 Sequencing (SRP001815)
243
319
+
Arg
TCG
[SRA]
>SRA1049069
SRR035095.14204
454 Sequencing (SRP001816)
147
223
+
Arg
TCG
[SRA]
>SRA1049559
SRR035095.95725
454 Sequencing (SRP001816)
119
195
+
Arg
TCG
[SRA]
>SRA1050302
SRR035095.234322
454 Sequencing (SRP001816)
377
453
+
Arg
TCG
[SRA]
Identical group No.272458 (4 seq.)
>WENV170623410
FUWD013150272
[FUWD] metagenome; unknown
429
502
+
Arg
TCG
[ENA]
¢þ
>WENV170631679
FUWD013361346
[FUWD] metagenome; unknown
429
502
+
Arg
TCG
[ENA]
¢þ
>SRA1026675
SRR035085.255288
454 Sequencing (SRP001806)
39
112
+
Arg
TCG
[SRA]
>SRA1026777
SRR035085.287923
454 Sequencing (SRP001806)
142
215
+
Arg
TCG
[SRA]
Identical group No.272464 (21 seq.)
>W1710802226
LJXT01000029
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
1777
1853
+
Arg
TCG
[ENA]
¡û
>W131211899
ATNM01000049
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
51082
51158
+
Arg
TCG
[ENA]
¡û
>W131223105
AUBU01000010
Bacteroidota
Algoriphagus marincola DSM 16067 [AUBU]
241704
241780
+
Arg
TCG
[ENA]
¡û
>W131223197
AUBX01000009
Bacteroidota
Algoriphagus vanfongensis DSM 17529 [AUBX]
858814
858890
+
Arg
TCG
[ENA]
¡û
>W1711707969
MSSX01000032
Bacteroidota
Algoriphagus faecimaris [MSSX]
23948
23872
-
Arg
TCG
[ENA]
¡û
>W141039126
ALWO02000023
Bacteroidota
Indibacter alkaliphilus LW1 [ALWO]
258103
258027
-
Arg
TCG
[ENA]
¡û
>WENV181233756
OFET01000074
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
55134
55060
-
Arg
TCG
[ENA]
¢þ
>WENV181234787
OFEU01008936
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
548
474
-
Arg
TCG
[ENA]
¢þ
>W141278901
JAFX01000001
Bacteroidota
Algoriphagus marincola HL-49 [JAFX]
1494303
1494379
+
Arg
TCG
[ENA]
¡û
>WENV183748105
PPFU01011660
[PPFU] hypolithon metagenome; Antarctic Hypolithon
875
949
+
Arg
TCG
[ENA]
¢þ
>WENV170192624
CEPF01037761
[CEPF] marine metagenome genome assembly TARA_039_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2083
2009
-
Arg
TCG
[ENA]
¢þ
>WENV170408982
CEUI01125135
[CEUI] marine metagenome genome assembly TARA_125_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
756
682
-
Arg
TCG
[ENA]
¢þ
>WENV170991978
MWWA01398069
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
140
66
-
Arg
TCG
[ENA]
¢þ
>WENV170994605
MWWE01014785
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
81
5
-
Arg
TCG
[ENA]
¢þ
>WENV170995009
MWWE01116630
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
306
230
-
Arg
TCG
[ENA]
¢þ
>W1910932878
NIUC01000001
Bacteroidota
Algoriphagus formosus XAY3209 [NIUC]
45866
45792
-
Arg
TCG
[ENA]
¡û
>SRA1026701
SRR035085.263994
454 Sequencing (SRP001806)
316
240
-
Arg
TCG
[SRA]
>W1610666083
LJXT01000029
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
1777
1853
+
Arg
TCG
[ENA]
¡û
>W1710513395
FNAC01000031
Bacteroidota
Algoriphagus faecimaris [FNAC]
32985
33061
+
Arg
TCG
[ENA]
¡û
>W1710562672
FOPC01000014
Bacteroidota
Algoriphagus hitonicola [FOPC]
15220
15296
+
Arg
TCG
[ENA]
¡û
>W1710571382
FOVW01000002
Bacteroidota
Algoriphagus ornithinivorans [FOVW]
92792
92718
-
Arg
TCG
[ENA]
¡û
Identical group No.272465 (9 seq.)
>WENV170623352
FUWD013147340
[FUWD] metagenome; unknown
840
764
-
Arg
TCG
[ENA]
¢þ
>WENV170626664
FUWD013228152
[FUWD] metagenome; unknown
137
213
+
Arg
TCG
[ENA]
¢þ
>WENV170626684
FUWD013228563
[FUWD] metagenome; unknown
466
390
-
Arg
TCG
[ENA]
¢þ
>WENV170631617
FUWD013358875
[FUWD] metagenome; unknown
840
764
-
Arg
TCG
[ENA]
¢þ
>SRA1018467
SRR035082.295875
454 Sequencing (SRP001803)
466
390
-
Arg
TCG
[SRA]
>SRA1018647
SRR035082.327414
454 Sequencing (SRP001803)
137
213
+
Arg
TCG
[SRA]
>SRA1026702
SRR035085.264160
454 Sequencing (SRP001806)
274
198
-
Arg
TCG
[SRA]
>SRA1026797
SRR035085.292878
454 Sequencing (SRP001806)
274
198
-
Arg
TCG
[SRA]
>SRA1035792
SRR035089.375895
454 Sequencing (SRP001810)
342
266
-
Arg
TCG
[SRA]
Identical group No.272475 (5 seq.)
>WENV170537773
CEWR01027719
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
181
257
+
Arg
TCG
[ENA]
¢þ
>WENV170818599
MDSX01075076
[MDSX] marine metagenome; seawater
1608
1684
+
Arg
TCG
[ENA]
¢þ
>WENV170935401
MDTG01256027
[MDTG] marine metagenome; seawater
3974
3898
-
Arg
TCG
[ENA]
¢þ
>SRA1026749
SRR035085.279678
454 Sequencing (SRP001806)
112
188
+
Arg
TCG
[SRA]
>WENV056746
AACY023264245
Marine microbial communities from Global Ocean Sampling (GOS)
515
593
+
Arg
TCG
[ENA]
Identical group No.272477 (3 seq.)
>WENV170611541
FUWD012344661
[FUWD] metagenome; unknown
202
128
-
Arg
TCG
[ENA]
¢þ
>SRA1026754
SRR035085.280379
454 Sequencing (SRP001806)
157
231
+
Arg
TCG
[SRA]
>SRA1026831
SRR035085.305753
454 Sequencing (SRP001806)
159
233
+
Arg
TCG
[SRA]
Identical group No.453286 (2 seq.)
>SRA1025807
SRR035085.86962
454 Sequencing (SRP001806)
136
61
-
Arg
TCG
[SRA]
>SRA1025829
SRR035085.89583
454 Sequencing (SRP001806)
134
59
-
Arg
TCG
[SRA]
Identical group No.453320 (1 seq.)
>SRA1025970
SRR035085.119443
454 Sequencing (SRP001806)
211
139
-
Arg
TCG
[SRA]
Identical group No.453335 (2 seq.)
>WENV170611862
FUWD012421919
[FUWD] metagenome; unknown
199
124
-
Arg
TCG
[ENA]
¢þ
>SRA1026061
SRR035085.134718
454 Sequencing (SRP001806)
209
134
-
Arg
TCG
[SRA]
Identical group No.654322 (4 seq.)
>WENV170605097
FUWD010449171
[FUWD] metagenome; unknown
264
335
+
Arg
TCG
[ENA]
¢þ
>SRA1026144
SRR035085.153138
454 Sequencing (SRP001806)
322
251
-
Arg
TCG
[SRA]
>SRA1030704
SRR035087.317213
454 Sequencing (SRP001808)
264
335
+
Arg
TCG
[SRA]
>SRA1031838
SRR035087.498115
454 Sequencing (SRP001808)
264
335
+
Arg
TCG
[SRA]
Identical group No.654406 (4 seq.)
>WENV170611911
FUWD012436366
[FUWD] metagenome; unknown
135
206
+
Arg
TCG
[ENA]
¢þ
>SRA1016959
SRR035082.60852
454 Sequencing (SRP001803)
50
121
+
Arg
TCG
[SRA]
>SRA1026770
SRR035085.285388
454 Sequencing (SRP001806)
145
216
+
Arg
TCG
[SRA]
>SRA1029412
SRR035087.122875
454 Sequencing (SRP001808)
391
462
+
Arg
TCG
[SRA]
Identical group No.654661 (4 seq.)
>WENV170607857
FUWD010861866
[FUWD] metagenome; unknown
106
35
-
Arg
TCG
[ENA]
¢þ
>SRA1018591
SRR035082.316876
454 Sequencing (SRP001803)
93
22
-
Arg
TCG
[SRA]
>SRA1026375
SRR035085.195348
454 Sequencing (SRP001806)
116
45
-
Arg
TCG
[SRA]
>SRA1031765
SRR035087.484451
454 Sequencing (SRP001808)
332
261
-
Arg
TCG
[SRA]
Identical group No.779808 (3 seq.)
>WENV170611854
FUWD012420215
[FUWD] metagenome; unknown
161
89
-
Arg
TCG
[ENA]
¢þ
>SRA1025973
SRR035085.119658
454 Sequencing (SRP001806)
171
99
-
Arg
TCG
[SRA]
>SRA1026260
SRR035085.174319
454 Sequencing (SRP001806)
172
100
-
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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