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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TGA
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29531 (5 seq.)
>WENV170622821
FUWD013122427
[FUWD] metagenome; unknown
717
805
+
Ser
TGA
[ENA]
¢þ
>WENV170631039
FUWD013335997
[FUWD] metagenome; unknown
717
805
+
Ser
TGA
[ENA]
¢þ
>SRA1025453
SRR035085.9962
454 Sequencing (SRP001806)
182
270
+
Ser
TGA
[SRA]
>SRA1026071
SRR035085.136417
454 Sequencing (SRP001806)
258
170
-
Ser
TGA
[SRA]
>SRA1035107
SRR035089.238567
454 Sequencing (SRP001810)
132
220
+
Ser
TGA
[SRA]
Identical group No.29536 (9 seq.)
>W1710799352
LJUP01000169
Bacteroidota
Bacteroides sp. SM23_62 [LJUP]
3342
3431
+
Ser
TGA
[ENA]
¡û
>WENV181231936
OFEK01092339
[OFEK] activated sludge metagenome; Anaerobic digester
432
521
+
Ser
TGA
[ENA]
¢þ
>WENV183512340
OMKS01000308
[OMKS] sediment metagenome; hot spring sediment
18832
18743
-
Ser
TGA
[ENA]
¢þ
>WENV170607841
FUWD010860116
[FUWD] metagenome; unknown
391
302
-
Ser
TGA
[ENA]
¢þ
>WENV170699023
LGVF01462682
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
321
232
-
Ser
TGA
[ENA]
¢þ
>SRA1025812
SRR035085.87840
454 Sequencing (SRP001806)
179
90
-
Ser
TGA
[SRA]
>SRA1034662
SRR035089.146881
454 Sequencing (SRP001810)
75
164
+
Ser
TGA
[SRA]
>SRA1034998
SRR035089.214667
454 Sequencing (SRP001810)
118
29
-
Ser
TGA
[SRA]
>W1610663309
LJUP01000169
Bacteroidota
Bacteroides sp. SM23_62 [LJUP]
3342
3431
+
Ser
TGA
[ENA]
¡û
Identical group No.29547 (6 seq.)
>WENV170612545
FUWD012632474
[FUWD] metagenome; unknown
182
271
+
Ser
TGA
[ENA]
¢þ
>SRA1018420
SRR035082.289211
454 Sequencing (SRP001803)
174
263
+
Ser
TGA
[SRA]
>SRA1026674
SRR035085.254976
454 Sequencing (SRP001806)
317
228
-
Ser
TGA
[SRA]
>SRA1026835
SRR035085.306660
454 Sequencing (SRP001806)
145
57
-
Ser
TGA
[SRA]
>SRA1048227
SRR035094.130419
454 Sequencing (SRP001815)
183
95
-
Ser
TGA
[SRA]
>SRA1048628
SRR035094.211885
454 Sequencing (SRP001815)
183
95
-
Ser
TGA
[SRA]
Identical group No.56225 (2 seq.)
>WENV170626208
FUWD013216469
[FUWD] metagenome; unknown
1028
941
-
Ser
TGA
[ENA]
¢þ
>SRA1026120
SRR035085.147286
454 Sequencing (SRP001806)
434
347
-
Ser
TGA
[SRA]
Identical group No.56234 (8 seq.)
>W131193753
ASOZ01000011
Atribacterota
Atribacteria bacterium JGI 0000014-F07 OP9 bacterium JGI 0000014-F07 [ASOZ]
4373
4286
-
Ser
TGA
[ENA]
¡û
>WENV170602334
FUWD010227344
[FUWD] metagenome; unknown
662
749
+
Ser
TGA
[ENA]
¢þ
>SRA1026641
SRR035085.246914
454 Sequencing (SRP001806)
177
90
-
Ser
TGA
[SRA]
>SRA1029421
SRR035087.124831
454 Sequencing (SRP001808)
99
12
-
Ser
TGA
[SRA]
>SRA1048242
SRR035094.133372
454 Sequencing (SRP001815)
91
178
+
Ser
TGA
[SRA]
>SRA1048422
SRR035094.169752
454 Sequencing (SRP001815)
91
178
+
Ser
TGA
[SRA]
>W1510076774
CDPL01000020
Atribacterota
Atribacteria bacterium JGI 0000014-F07 [CDPL]
5546
5633
+
Ser
TGA
[ENA]
¡û
>W1510076786
CDPL01000121
Atribacterota
Atribacteria bacterium JGI 0000014-F07 [CDPL]
1769
1682
-
Ser
TGA
[ENA]
¡û
Identical group No.56237 (8 seq.)
>WENV180721388
ODGL01000085
[ODGL] human metagenome; G_DNA_Subgingival plaque
471
386
-
Ser
TGA
[ENA]
¢þ
>WENV180734052
ODGZ01002202
[ODGZ] human metagenome; G_DNA_Supragingival plaque
9219
9304
+
Ser
TGA
[ENA]
¢þ
>WENV180975590
ODUY01011509
[ODUY] human metagenome; G_DNA_Supragingival plaque
676
591
-
Ser
TGA
[ENA]
¢þ
>WENV183706406
PDWI01004110
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
19571
19657
+
Ser
TGA
[ENA]
¢þ
>WENV170694332
LGVD01036065
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
454
369
-
Ser
TGA
[ENA]
¢þ
>WENV170694717
LGVE01004054
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
448
361
-
Ser
TGA
[ENA]
¢þ
>WENV170698087
LGVF01255943
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
121
208
+
Ser
TGA
[ENA]
¢þ
>SRA1026679
SRR035085.257548
454 Sequencing (SRP001806)
278
365
+
Ser
TGA
[SRA]
Identical group No.73369 (3 seq.)
>WENV170608175
FUWD010899182
[FUWD] metagenome; unknown
467
553
+
Ser
TGA
[ENA]
¢þ
>SRA1044117
SRR035092.226854
454 Sequencing (SRP001813)
116
202
+
Ser
TGA
[SRA]
>SRA1026066
SRR035085.135516
454 Sequencing (SRP001806)
436
350
-
Gln
TTG
[SRA]
Identical group No.99993 (6 seq.)
>WENV170607829
FUWD010859404
[FUWD] metagenome; unknown
88
171
+
Ser
TGA
[ENA]
¢þ
>WENV170677952
LDZT01010158
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1477
1562
+
Ser
TGA
[ENA]
¢þ
>WENV170679279
LDZU01009390
[LDZU] terrestrial metagenome; oil reservoir sample SB2
5447
5532
+
Ser
TGA
[ENA]
¢þ
>WENV170978646
MTKZ01057264
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4350
4435
+
Ser
TGA
[ENA]
¢þ
>SRA1025607
SRR035085.48757
454 Sequencing (SRP001806)
77
160
+
Ser
TGA
[SRA]
>SRA1040563
SRR035091.115634
454 Sequencing (SRP001812)
151
234
+
Ser
TGA
[SRA]
Identical group No.99994 (25 seq.)
>W131157563
AQSK01000206
Unclassified
Cloacimonetes bacterium SCGC AAA252-E13 KSB1 bacterium SCGC AAA252-E13 [AQSK]
33832
33917
+
Ser
TGA
[ENA]
¡û
>W131157628
AQSM01000150
Unclassified
Cloacimonetes bacterium SCGC AAA252-N14 KSB1 bacterium SCGC AAA252-N14 [AQSM]
467
382
-
Ser
TGA
[ENA]
¡û
>W131192171
ASKQ01000029
Unclassified
Cloacimonetes bacterium SCGC AAA252-O17 KSB1 bacterium SCGC AAA252-O17 [ASKQ]
385
300
-
Ser
TGA
[ENA]
¡û
>W131192939
ASNH01000025
Unclassified
Cloacimonetes bacterium SCGC AAA255-C20 KSB1 bacterium SCGC AAA255-C20 [ASNH]
6854
6939
+
Ser
TGA
[ENA]
¡û
>W131192984
ASNI01000022
Unclassified
Cloacimonetes bacterium SCGC AAA252-N17 KSB1 bacterium SCGC AAA252-N17 [ASNI]
8776
8691
-
Ser
TGA
[ENA]
¡û
>W131193058
ASNM01000043
Unclassified
Cloacimonetes bacterium SCGC AAA252-G08 KSB1 bacterium SCGC AAA252-G08 [ASNM]
13224
13309
+
Ser
TGA
[ENA]
¡û
>W131193140
ASNQ01000022
Unclassified
Cloacimonetes bacterium SCGC AAA252-K16 KSB1 bacterium SCGC AAA252-K16 [ASNQ]
9424
9339
-
Ser
TGA
[ENA]
¡û
>W131193197
ASNT01000035
Unclassified
Cloacimonetes bacterium SCGC AAA252-P10 KSB1 bacterium SCGC AAA252-P10 [ASNT]
16869
16954
+
Ser
TGA
[ENA]
¡û
>WENV181208441
OFBB01013243
[OFBB] metagenome; hydrothermal vent
77
162
+
Ser
TGA
[ENA]
¢þ
>W141139673
AWNX01000008
Unclassified
Cloacimonetes bacterium JGI OTU-1 [AWNX]
4729
4644
-
Ser
TGA
[ENA]
¡û
>WENV170600993
FUWD010151907
[FUWD] metagenome; unknown
814
729
-
Ser
TGA
[ENA]
¢þ
>WENV170625242
FUWD013193950
[FUWD] metagenome; unknown
5080
4995
-
Ser
TGA
[ENA]
¢þ
>WENV170625246
FUWD013193951
[FUWD] metagenome; unknown
143
58
-
Ser
TGA
[ENA]
¢þ
>WENV170633487
FUWD013396907
[FUWD] metagenome; unknown
5080
4995
-
Ser
TGA
[ENA]
¢þ
>WENV170633491
FUWD013396908
[FUWD] metagenome; unknown
143
58
-
Ser
TGA
[ENA]
¢þ
>SRA1025629
SRR035085.53463
454 Sequencing (SRP001806)
36
121
+
Ser
TGA
[SRA]
>SRA1026167
SRR035085.157123
454 Sequencing (SRP001806)
201
286
+
Ser
TGA
[SRA]
>SRA1030331
SRR035087.264545
454 Sequencing (SRP001808)
340
255
-
Ser
TGA
[SRA]
>SRA1031462
SRR035087.433744
454 Sequencing (SRP001808)
296
211
-
Ser
TGA
[SRA]
>SRA1032098
SRR035087.552143
454 Sequencing (SRP001808)
188
273
+
Ser
TGA
[SRA]
>SRA1032864
SRR035088.118836
454 Sequencing (SRP001809)
483
398
-
Ser
TGA
[SRA]
>SRA1033581
SRR035088.293464
454 Sequencing (SRP001809)
172
257
+
Ser
TGA
[SRA]
>SRA1033713
SRR035088.334285
454 Sequencing (SRP001809)
44
129
+
Ser
TGA
[SRA]
>SRA1033776
SRR035088.351273
454 Sequencing (SRP001809)
278
363
+
Ser
TGA
[SRA]
>SRA1050209
SRR035095.212599
454 Sequencing (SRP001816)
101
16
-
Ser
TGA
[SRA]
Identical group No.100004 (78 seq.)
>C005323
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
570415
570333
-
Ser
TGA
[Ensembl]
¡û
>C018270
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1190073
1189991
-
Ser
TGA
[Ensembl]
¡û
>WENV170613664
FUWD012815692
[FUWD] metagenome; unknown
1122
1205
+
Ser
TGA
[ENA]
¢þ
>W09103366
AAJD01000012
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
2592
2509
-
Ser
TGA
[ENA]
¡û
>SRA1018543
SRR035082.307913
454 Sequencing (SRP001803)
111
28
-
Ser
TGA
[SRA]
>SRA1020077
SRR035083.54387
454 Sequencing (SRP001804)
93
10
-
Ser
TGA
[SRA]
>SRA1020315
SRR035083.95829
454 Sequencing (SRP001804)
42
125
+
Ser
TGA
[SRA]
>SRA1020333
SRR035083.98303
454 Sequencing (SRP001804)
208
125
-
Ser
TGA
[SRA]
>SRA1020420
SRR035083.112053
454 Sequencing (SRP001804)
91
8
-
Ser
TGA
[SRA]
>SRA1020511
SRR035083.127693
454 Sequencing (SRP001804)
206
123
-
Ser
TGA
[SRA]
>SRA1020618
SRR035083.141439
454 Sequencing (SRP001804)
42
125
+
Ser
TGA
[SRA]
>SRA1020676
SRR035083.151027
454 Sequencing (SRP001804)
113
196
+
Ser
TGA
[SRA]
>SRA1020731
SRR035083.156910
454 Sequencing (SRP001804)
260
343
+
Ser
TGA
[SRA]
>SRA1021004
SRR035083.196152
454 Sequencing (SRP001804)
246
329
+
Ser
TGA
[SRA]
>SRA1021133
SRR035083.213223
454 Sequencing (SRP001804)
170
253
+
Ser
TGA
[SRA]
>SRA1021195
SRR035083.222248
454 Sequencing (SRP001804)
43
126
+
Ser
TGA
[SRA]
>SRA1021243
SRR035083.227941
454 Sequencing (SRP001804)
239
156
-
Ser
TGA
[SRA]
>SRA1021245
SRR035083.228190
454 Sequencing (SRP001804)
92
175
+
Ser
TGA
[SRA]
>SRA1021287
SRR035083.237016
454 Sequencing (SRP001804)
239
156
-
Ser
TGA
[SRA]
>SRA1021498
SRR035083.266198
454 Sequencing (SRP001804)
206
123
-
Ser
TGA
[SRA]
>SRA1021580
SRR035083.275748
454 Sequencing (SRP001804)
371
454
+
Ser
TGA
[SRA]
>SRA1021664
SRR035083.290010
454 Sequencing (SRP001804)
136
53
-
Ser
TGA
[SRA]
>SRA1021811
SRR035083.312690
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1021853
SRR035083.317812
454 Sequencing (SRP001804)
124
41
-
Ser
TGA
[SRA]
>SRA1021885
SRR035083.324145
454 Sequencing (SRP001804)
104
187
+
Ser
TGA
[SRA]
>SRA1021935
SRR035083.329251
454 Sequencing (SRP001804)
135
218
+
Ser
TGA
[SRA]
>SRA1021953
SRR035083.331676
454 Sequencing (SRP001804)
239
156
-
Ser
TGA
[SRA]
>SRA1022037
SRR035083.342775
454 Sequencing (SRP001804)
115
32
-
Ser
TGA
[SRA]
>SRA1022083
SRR035083.349811
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1022184
SRR035083.365110
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1022230
SRR035083.371262
454 Sequencing (SRP001804)
41
124
+
Ser
TGA
[SRA]
>SRA1022247
SRR035083.374137
454 Sequencing (SRP001804)
155
72
-
Ser
TGA
[SRA]
>SRA1022321
SRR035083.389183
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1022504
SRR035083.415272
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1022507
SRR035083.415663
454 Sequencing (SRP001804)
124
41
-
Ser
TGA
[SRA]
>SRA1022531
SRR035083.421688
454 Sequencing (SRP001804)
36
119
+
Ser
TGA
[SRA]
>SRA1022563
SRR035083.424735
454 Sequencing (SRP001804)
79
162
+
Ser
TGA
[SRA]
>SRA1022589
SRR035083.429299
454 Sequencing (SRP001804)
128
45
-
Ser
TGA
[SRA]
>SRA1022791
SRR035083.461356
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1022867
SRR035083.476091
454 Sequencing (SRP001804)
173
256
+
Ser
TGA
[SRA]
>SRA1022892
SRR035083.480011
454 Sequencing (SRP001804)
36
119
+
Ser
TGA
[SRA]
>SRA1022944
SRR035083.492741
454 Sequencing (SRP001804)
72
155
+
Ser
TGA
[SRA]
>SRA1022973
SRR035083.498861
454 Sequencing (SRP001804)
127
44
-
Ser
TGA
[SRA]
>SRA1026023
SRR035085.128543
454 Sequencing (SRP001806)
163
80
-
Ser
TGA
[SRA]
>SRA1028909
SRR035087.36046
454 Sequencing (SRP001808)
93
10
-
Ser
TGA
[SRA]
>SRA1029881
SRR035087.195688
454 Sequencing (SRP001808)
94
11
-
Ser
TGA
[SRA]
>SRA1031977
SRR035087.524255
454 Sequencing (SRP001808)
356
273
-
Ser
TGA
[SRA]
>SRA1033224
SRR035088.200691
454 Sequencing (SRP001809)
385
472
+
Ser
TGA
[SRA]
>SRA1033692
SRR035088.326312
454 Sequencing (SRP001809)
119
202
+
Ser
TGA
[SRA]
>SRA1033916
SRR035088.405934
454 Sequencing (SRP001809)
197
280
+
Ser
TGA
[SRA]
>SRA1035845
SRR035089.387519
454 Sequencing (SRP001810)
395
478
+
Ser
TGA
[SRA]
>SRA1036833
SRR035090.20100
454 Sequencing (SRP001811)
72
155
+
Ser
TGA
[SRA]
>SRA1036871
SRR035090.29678
454 Sequencing (SRP001811)
414
497
+
Ser
TGA
[SRA]
>SRA1037178
SRR035090.88136
454 Sequencing (SRP001811)
61
144
+
Ser
TGA
[SRA]
>SRA1037469
SRR035090.138329
454 Sequencing (SRP001811)
75
158
+
Ser
TGA
[SRA]
>SRA1037492
SRR035090.142333
454 Sequencing (SRP001811)
422
505
+
Ser
TGA
[SRA]
>SRA1037640
SRR035090.166947
454 Sequencing (SRP001811)
69
152
+
Ser
TGA
[SRA]
>SRA1037652
SRR035090.169756
454 Sequencing (SRP001811)
69
152
+
Ser
TGA
[SRA]
>SRA1037815
SRR035090.200872
454 Sequencing (SRP001811)
244
161
-
Ser
TGA
[SRA]
>SRA1038053
SRR035090.239510
454 Sequencing (SRP001811)
71
154
+
Ser
TGA
[SRA]
>SRA1038060
SRR035090.240978
454 Sequencing (SRP001811)
125
42
-
Ser
TGA
[SRA]
>SRA1038213
SRR035090.266097
454 Sequencing (SRP001811)
156
73
-
Ser
TGA
[SRA]
>SRA1038258
SRR035090.275257
454 Sequencing (SRP001811)
147
64
-
Ser
TGA
[SRA]
>SRA1038477
SRR035090.313059
454 Sequencing (SRP001811)
312
395
+
Ser
TGA
[SRA]
>SRA1038596
SRR035090.333358
454 Sequencing (SRP001811)
69
152
+
Ser
TGA
[SRA]
>SRA1038802
SRR035090.369478
454 Sequencing (SRP001811)
291
374
+
Ser
TGA
[SRA]
>SRA1038808
SRR035090.370924
454 Sequencing (SRP001811)
170
253
+
Ser
TGA
[SRA]
>SRA1038858
SRR035090.381487
454 Sequencing (SRP001811)
170
253
+
Ser
TGA
[SRA]
>SRA1038898
SRR035090.390712
454 Sequencing (SRP001811)
55
138
+
Ser
TGA
[SRA]
>SRA1039449
SRR035090.494821
454 Sequencing (SRP001811)
40
123
+
Ser
TGA
[SRA]
>SRA1039456
SRR035090.496129
454 Sequencing (SRP001811)
61
144
+
Ser
TGA
[SRA]
>SRA1039519
SRR035090.507904
454 Sequencing (SRP001811)
10
93
+
Ser
TGA
[SRA]
>SRA1039786
SRR035090.568998
454 Sequencing (SRP001811)
350
433
+
Ser
TGA
[SRA]
>SRA1045644
SRR035093.140663
454 Sequencing (SRP001814)
150
67
-
Ser
TGA
[SRA]
>SRA1050563
SRR035095.293448
454 Sequencing (SRP001816)
193
276
+
Ser
TGA
[SRA]
>SRA1054167
SRR035099.74429
454 Sequencing (SRP001820)
423
340
-
Ser
TGA
[SRA]
>SRA1054198
SRR035099.81380
454 Sequencing (SRP001820)
423
340
-
Ser
TGA
[SRA]
>SRA1054236
SRR035099.90380
454 Sequencing (SRP001820)
152
69
-
Ser
TGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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