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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = TTG
HIT:
44 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256692 (1 seq.)
>At1424
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
4715951
4715877
-
Gln
TTG
[Ensembl]
¡û
Identical group No.322028 (1 seq.)
>A171005694
CP009552
Euryarchaeota
Geoglobus acetivorans SBH6 [CP009552]
726595
726520
-
Gln
TTG
-
¡û
Identical group No.415944 (1 seq.)
>A178000418
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
1033151
1033253
+
Gln
TTG
-
¡û
Identical group No.455556 (4 seq.)
>A171003071
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
2986482
2986410
-
Gln
TTG
-
¡û
>W1910568494
JDTG01000005
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
355680
355608
-
Gln
TTG
[ENA]
¡û
>W1610004122
AGIN01000002
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
281953
281881
-
Gln
TTG
[ENA]
¡û
>W1610012248
AOIE01000063
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
42466
42394
-
Gln
TTG
[ENA]
¡û
Identical group No.455581 (5 seq.)
>A171000004
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
400936
401009
+
Gln
TTG
-
¡û
>A178000361
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
960785
960683
-
Gln
TTG
-
¡û
>A178000692
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
630631
630507
-
Gln
TTG
-
¡û
>At0797
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
409659
409731
+
Gln
TTG
[Ensembl]
¡û
>W1610014464
AOMA01000082
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
42447
42520
+
Gln
TTG
[ENA]
¡û
Identical group No.455595 (25 seq.)
>A171000783
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
2815219
2815291
+
Gln
TTG
-
¡û
>A171003174
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
3240526
3240453
-
Gln
TTG
-
¡û
>A171007296
HF582854
Euryarchaeota
Natronomonas moolapensis 8.8.11 [HF582854]
662674
662602
-
Gln
TTG
-
¡û
>A171007461
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
737082
737009
-
Gln
TTG
-
¡û
>A178000282
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
3173976
3174079
+
Gln
TTG
-
¡û
>A178000674
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
977203
977304
+
Gln
TTG
-
¡û
>A178000699
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
4130182
4130285
+
Gln
TTG
-
¡û
>W1910006725
BBJO01000047
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
29266
29194
-
Gln
TTG
[ENA]
¡û
>W1910228609
FNVN01000002
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
157847
157775
-
Gln
TTG
[ENA]
¡û
>W1910230039
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
962997
962925
-
Gln
TTG
[ENA]
¡û
>W1910572702
JNCS01000002
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
30440
30513
+
Gln
TTG
[ENA]
¡û
>W1911769961
QXIJ01000001
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
45359
45286
-
Gln
TTG
[ENA]
¡û
>W1610000821
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
910605
910533
-
Gln
TTG
[ENA]
¡û
>W1610005364
AJVG01000003
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
121122
121049
-
Gln
TTG
[ENA]
¡û
>W1610012361
AOIJ01000062
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
1235
1307
+
Gln
TTG
[ENA]
¡û
>W1610012374
AOIK01000012
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
30365
30440
+
Gln
TTG
[ENA]
¡û
>W1610018986
AQZY01000010
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
610533
610461
-
Gln
TTG
[ENA]
¡û
>W1610082991
CBMA010000030
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
54873
54800
-
Gln
TTG
[ENA]
¡û
>W1610085091
CEML01000002
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
518727
518654
-
Gln
TTG
[ENA]
¡û
>W1610085110
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
1945544
1945617
+
Gln
TTG
[ENA]
¡û
>W1610085149
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
1988870
1988943
+
Gln
TTG
[ENA]
¡û
>W1610085188
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
2030798
2030871
+
Gln
TTG
[ENA]
¡û
>W1610085249
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
527643
527570
-
Gln
TTG
[ENA]
¡û
>W1610085290
CEMR01000002
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
527603
527530
-
Gln
TTG
[ENA]
¡û
>W1610085331
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
527546
527473
-
Gln
TTG
[ENA]
¡û
Identical group No.456274 (4 seq.)
>A171002487
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
77295
77370
+
Gln
TTG
-
¡û
>At1080
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
1549679
1549604
-
Gln
TTG
[Ensembl]
¡û
>At1119
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
82518
82593
+
Gln
TTG
[Ensembl]
¡û
>W1610000319
AAWI01000002
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
340711
340636
-
Gln
TTG
[ENA]
¡û
Identical group No.463287 (2 seq.)
>At1607
CP000254
Euryarchaeota
Methanospirillum hungatei JF-1 [CP000254]
1370685
1370757
+
Gln
TTG
[Ensembl]
¡û
>W1610000197
AALU01000028
Euryarchaeota
Methanospirillum hungatei JF-1 [AALU]
5227
5155
-
Gln
TTG
[ENA]
¡û
Identical group No.485354 (4 seq.)
>A171001498
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
922981
922906
-
Gln
TTG
-
¡û
>W1610001160
ACQY01000020
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
11587
11512
-
Gln
TTG
[ENA]
¡û
>W1610018107
APMM01000052
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [APMM]
95
170
+
Gln
TTG
[ENA]
¡û
>W1610018643
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
1147638
1147563
-
Gln
TTG
[ENA]
¡û
Identical group No.507973 (1 seq.)
>A171005684
CP009552
Euryarchaeota
Geoglobus acetivorans SBH6 [CP009552]
1193428
1193356
-
Gln
TTG
-
¡û
Identical group No.507979 (6 seq.)
>A171002701
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
1229529
1229602
+
Gln
TTG
-
¡û
>A171004396
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
756422
756494
+
Gln
TTG
-
¡û
>A171006154
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
756699
756771
+
Gln
TTG
-
¡û
>A178000118
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
788052
788155
+
Gln
TTG
-
¡û
>A178000563
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
777565
777669
+
Gln
TTG
-
¡û
>W1610012629
AOIQ01000006
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
326953
326881
-
Gln
TTG
[ENA]
¡û
Identical group No.523999 (9 seq.)
>A171001460
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
1808415
1808342
-
Gln
TTG
-
¡û
>A171006794
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
913491
913566
+
Gln
TTG
-
¡û
>W1910228334
FNMU01000004
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
158644
158569
-
Gln
TTG
[ENA]
¡û
>W1910471821
FXBN01000002
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
327531
327456
-
Gln
TTG
[ENA]
¡û
>W1910582994
JWTK01000007
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
2543
2468
-
Gln
TTG
[ENA]
¡û
>W1910672533
MCNQ01000002
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
99902
99974
+
Gln
TTG
[ENA]
¡û
>W1911492133
OBDR01000005
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
99898
99970
+
Gln
TTG
[ENA]
¡û
>W1911653201
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
1302111
1302183
+
Gln
TTG
[ENA]
¡û
>W1610919870
LSRU01000082
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
108
183
+
Gln
TTG
[ENA]
¡û
Identical group No.526070 (2 seq.)
>A171001551
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1617625
1617552
-
Gln
TTG
-
¡û
>W1610000614
ABHB01000002
Euryarchaeota
Methanococcus voltae A3 [ABHB]
97391
97464
+
Gln
TTG
[ENA]
¡û
Identical group No.526085 (2 seq.)
>A171001228
CP001899
Euryarchaeota
Ferroglobus placidus DSM 10642 [CP001899]
1809297
1809225
-
Gln
TTG
-
¡û
>W1610001605
ACYZ01000012
Euryarchaeota
Ferroglobus placidus DSM 10642 [ACYZ]
40821
40749
-
Gln
TTG
[ENA]
¡û
Identical group No.526118 (2 seq.)
>A171001787
CP002117
Euryarchaeota
Methanolacinia petrolearia DSM 11571 [CP002117]
341741
341669
-
Gln
TTG
-
¡û
>W1610029784
AXDV01000063
Euryarchaeota
Methanolacinia paynteri DSM 2545 [AXDV]
109851
109779
-
Gln
TTG
[ENA]
¡û
Identical group No.526232 (1 seq.)
>A171001708
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
112973
113045
+
Gln
TTG
-
¡û
Identical group No.526237 (1 seq.)
>A171002588
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
1386726
1386651
-
Gln
TTG
-
¡û
Identical group No.526244 (1 seq.)
>A171006139
CP011267
Euryarchaeota
Geoglobus ahangari 234 [CP011267]
866618
866546
-
Gln
TTG
-
¡û
Identical group No.526252 (1 seq.)
>A179000425
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
2490865
2490968
+
Gln
TTG
-
¡û
Identical group No.538375 (2 seq.)
>At1162
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
1097259
1097331
+
Gln
TTG
[Ensembl]
¡û
>W1610000370
AAWX01000004
Euryarchaeota
Methanococcus vannielii SB [AAWX]
39175
39248
+
Gln
TTG
[ENA]
¡û
Identical group No.538377 (4 seq.)
>A171000276
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
818057
817982
-
Gln
TTG
-
¡û
>At1088
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
1040102
1040177
+
Gln
TTG
[Ensembl]
¡û
>W1610000469
AAZM01000002
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
732837
732762
-
Gln
TTG
[ENA]
¡û
>W1610000570
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
1663407
1663332
-
Gln
TTG
[ENA]
¡û
Identical group No.538530 (3 seq.)
>A171004129
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
831822
831894
+
Gln
TTG
-
¡û
>W1910230855
FOZS01000002
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
812375
812447
+
Gln
TTG
[ENA]
¡û
>W1910572561
JMIP02000014
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
105721
105649
-
Gln
TTG
[ENA]
¡û
Identical group No.551538 (5 seq.)
>A171003085
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
875614
875686
+
Gln
TTG
-
¡û
>W1910230459
FORO01000038
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
29549
29477
-
Gln
TTG
[ENA]
¡û
>W1911591350
PKKI01000059
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
12908
12836
-
Gln
TTG
[ENA]
¡û
>W1610004104
AGIM01000011
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
77360
77432
+
Gln
TTG
[ENA]
¡û
>W1610012186
AOIC01000120
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
29459
29387
-
Gln
TTG
[ENA]
¡û
Identical group No.551676 (1 seq.)
>A171002919
CP003243
Euryarchaeota
Methanocella conradii HZ254 [CP003243]
1981279
1981207
-
Gln
TTG
-
¡û
Identical group No.563456 (2 seq.)
>At1361
CP000477
Euryarchaeota
Methanothrix thermoacetophila PT [CP000477]
705625
705553
-
Gln
TTG
[Ensembl]
¡û
>W1610000232
AAOR01000007
Euryarchaeota
Methanothrix thermoacetophila PT [AAOR]
754
682
-
Gln
TTG
[ENA]
¡û
Identical group No.575128 (1 seq.)
>At1295
AE009439
Euryarchaeota
Methanopyrus kandleri AV19 [AE009439]
172302
172377
+
Gln
TTG
[Ensembl]
¡û
Identical group No.594123 (1 seq.)
>A171000052
AP011532
Euryarchaeota
Methanocella paludicola SANAE [AP011532]
911441
911514
+
Gln
TTG
-
¡û
Identical group No.603268 (1 seq.)
>A171001624
CP002069
Euryarchaeota
Methanohalobium evestigatum Z-7303 [CP002069]
1894457
1894382
-
Gln
TTG
-
¡û
Identical group No.612942 (1 seq.)
>A171005378
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
2225914
2225842
-
Gln
TTG
-
¡û
Identical group No.620837 (2 seq.)
>A171000388
CP001338
Euryarchaeota
Methanosphaerula palustris E1-9c [CP001338]
1296513
1296585
+
Gln
TTG
-
¡û
>W1610000984
ABZB01000001
Euryarchaeota
Methanosphaerula palustris palustris E1-9c [ABZB]
766933
766861
-
Gln
TTG
[ENA]
¡û
Identical group No.620842 (1 seq.)
>A171003650
CP005290
Euryarchaeota
Archaeoglobus sulfaticallidus PM70-1 [CP005290]
873533
873605
+
Gln
TTG
-
¡û
Identical group No.628000 (3 seq.)
>CL171500011
CP002988
Euryarchaeota
halophilic archaeon DL31 [CP002988]
2786924
2787026
+
Gln
TTG
[Ensembl]
¡û
>W1910281618
FQWV01000001
Euryarchaeota
Halobaculum gomorrense DSM 9297 [FQWV]
561497
561569
+
Gln
TTG
[ENA]
¡û
>W1610020292
ASGZ01000029
Euryarchaeota
Candidatus Halobonum tyrrellensis tyrrellensis G22 [ASGZ]
105360
105288
-
Gln
TTG
[ENA]
¡û
Identical group No.628485 (1 seq.)
>A178000138
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
781200
781304
+
Gln
TTG
-
¡û
Identical group No.629651 (1 seq.)
>At1715
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
725856
725784
-
Gln
TTG
[Ensembl]
¡û
Identical group No.640509 (1 seq.)
>A171002094
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
745767
745840
+
Gln
TTG
-
¡û
Identical group No.647521 (1 seq.)
>A171000961
CP001719
Euryarchaeota
Methanobrevibacter ruminantium M1 [CP001719]
362325
362251
-
Pseudo
TTG
-
¡û
Identical group No.647528 (1 seq.)
>A171002741
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
1536882
1536955
+
Gln
TTG
-
¡û
Identical group No.647548 (1 seq.)
>A171006690
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
949285
949357
+
Gln
TTG
-
¡û
Identical group No.673266 (1 seq.)
>A171002259
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
2076590
2076518
-
Gln
TTG
-
¡û
Identical group No.705176 (1 seq.)
>A171002047
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
421574
421501
-
Gln
TTG
-
¡û
Identical group No.713264 (1 seq.)
>A171003578
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
533402
533329
-
Gln
TTG
-
¡û
Identical group No.720683 (1 seq.)
>A171001809
CP002278
Euryarchaeota
Methanothermus fervidus DSM 2088 [CP002278]
1136311
1136238
-
Gln
TTG
-
¡û
Identical group No.727419 (1 seq.)
>A171007327
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1591026
1590953
-
Gln
TTG
-
¡û
Identical group No.756847 (1 seq.)
>A171003658
CP005290
Euryarchaeota
Archaeoglobus sulfaticallidus PM70-1 [CP005290]
1361109
1361180
+
Gln
TTG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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