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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
21 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1014545
SRR023845.192877
117868
Bacteroidota
TAG
Leu
>SRA1014617
SRR023845.228920
189252
Bacteroidota
GGC
Ala
>SRA1014682
SRR023845.261094
284498
Bacteroidota
TTG
Gln
>SRA1014687
SRR023845.263639
179693
Bacteroidota
CAT
Met
>SRA1014739
SRR023845.291170
99904
Bacteroidota
GTA
Tyr
>SRA1014178
SRR023845.29244
284496
Bacteroidota
GCC
Gly
>SRA1014809
SRR023845.322740
211453
Bacteroidota
TCT
Arg
>SRA1014812
SRR023845.323050
298432
Bacteroidota
TCC
Gly
>SRA1014199
SRR023845.36176
73098
Bacteroidota
TGT
Thr
>SRA1014908
SRR023845.375845
284498
Bacteroidota
TTG
Gln
>SRA1014971
SRR023845.403438
176429
Bacteroidota
GTC
Asp
>SRA1014993
SRR023845.416425
179691
Bacteroidota
GTT
Asn
>SRA1014994
SRR023845.416432
155765
Bacteroidota
TAC
Val
>SRA1015072
SRR023845.448261
284495
Bacteroidota
CCC
Gly
>SRA1015119
SRR023845.466722
284495
Bacteroidota
CCC
Gly
>SRA1015128
SRR023845.470498
284495
Bacteroidota
CCC
Gly
>SRA1015143
SRR023845.476809
117868
Bacteroidota
TAG
Leu
>SRA1015166
SRR023845.483733
29851
Bacteroidota
CGA
Ser
>SRA1015217
SRR023845.502732
122339
Bacteroidota
CAG
Leu
>SRA1014276
SRR023845.68048
99904
Bacteroidota
GTA
Tyr
>SRA1014307
SRR023845.83485
281129
Bacteroidota
CCC
Gly
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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