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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170555320
CXWL01000137
338268
Alphaproteobacteria
GAC
Val
>WENV170555321
CXWL01000137
243633
Alphaproteobacteria
CGT
Thr
>WENV170555417
CXWL01000556
237281
Alphaproteobacteria
CGT
Thr
>WENV170555423
CXWL01000579
383873
Alphaproteobacteria
>WENV170555429
CXWL01000581
338268
Alphaproteobacteria
GAC
Val
>WENV170555433
CXWL01000586
101826
Alphaproteobacteria
TAG
Leu
>WENV170555541
CXWL01000961
383873
Alphaproteobacteria
>WENV170555559
CXWL01001134
24994
Alphaproteobacteria
GGA
Ser
>WENV170555601
CXWL01001321
369678
Alphaproteobacteria
GGT
Thr
>WENV170555695
CXWL01001801
101826
Alphaproteobacteria
TAG
Leu
>WENV170555781
CXWL01002153
338274
Alphaproteobacteria
TAC
Val
>WENV170555783
CXWL01002153
80626
Alphaproteobacteria
GTA
Tyr
>WENV170555816
CXWL01002410
180581
Alphaproteobacteria
TGG
Pro
>WENV170555861
CXWL01002626
23572
Alphaproteobacteria
TGA
Ser
>WENV170555873
CXWL01002782
159305
Alphaproteobacteria
GTC
Asp
>WENV170556051
CXWL01004260
146683
Alphaproteobacteria
GTG
His
>WENV170556086
CXWL01004693
236004
Alphaproteobacteria
TTT
Lys
>WENV170556087
CXWL01004693
146683
Alphaproteobacteria
GTG
His
>WENV170556116
CXWL01004985
80626
Alphaproteobacteria
GTA
Tyr
>WENV170556125
CXWL01005015
148306
Alphaproteobacteria
GTG
His
>WENV170556137
CXWL01005137
383873
Alphaproteobacteria
>WENV170556187
CXWL01005521
338274
Alphaproteobacteria
TAC
Val
>WENV170556233
CXWL01005920
241021
Alphaproteobacteria
GGC
Ala
>WENV170556498
CXWL01009555
95928
Alphaproteobacteria
TAG
Leu
>WENV170556501
CXWL01009583
239134
Alphaproteobacteria
CAT
Met
>WENV170556647
CXWL01011509
180581
Alphaproteobacteria
TGG
Pro
>WENV170556664
CXWL01011822
239134
Alphaproteobacteria
CAT
Met
>WENV170556777
CXWL01013546
180581
Alphaproteobacteria
TGG
Pro
>WENV170556778
CXWL01013546
24760
Alphaproteobacteria
TGA
Ser
>WENV170556788
CXWL01013709
23572
Alphaproteobacteria
TGA
Ser
>WENV170556910
CXWL01016012
339465
Alphaproteobacteria
GGT
Thr
>WENV170556979
CXWL01017042
401200
Alphaproteobacteria
GTT
Asn
>WENV170557299
CXWL01023371
338274
Alphaproteobacteria
TAC
Val
>WENV170557407
CXWL01026081
236004
Alphaproteobacteria
TTT
Lys
>WENV170557429
CXWL01026871
237281
Alphaproteobacteria
CGT
Thr
>WENV170557481
CXWL01028068
338268
Alphaproteobacteria
GAC
Val
>WENV170557512
CXWL01028723
339490
Alphaproteobacteria
GAC
Val
>WENV170557563
CXWL01030621
366247
Alphaproteobacteria
TAC
Val
>WENV170557661
CXWL01033292
24994
Alphaproteobacteria
GGA
Ser
>WENV170557882
CXWL01041299
254524
Alphaproteobacteria
TAC
Val
>WENV170558094
CXWL01049699
80626
Alphaproteobacteria
GTA
Tyr
>WENV170558143
CXWL01053026
352247
Alphaproteobacteria
TTG
Gln
>WENV170558242
CXWL01059110
412151
Alphaproteobacteria
GCA
Cys
>WENV170558261
CXWL01060138
282595
Alphaproteobacteria
CCA
Trp
>WENV170558863
CXWL01096428
148854
Alphaproteobacteria
GTC
Asp
>WENV170559024
CXWL01106665
338287
Alphaproteobacteria
GGT
Thr
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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