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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GCT
HIT:
44 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3659 (1 seq.)
>SRA1029039
SRR035087.64018
454 Sequencing (SRP001808)
7
100
+
Ser
GCT
[SRA]
Identical group No.3660 (1 seq.)
>SRA1030022
SRR035087.217440
454 Sequencing (SRP001808)
78
172
+
Ser
GCT
[SRA]
Identical group No.3662 (1 seq.)
>SRA1030690
SRR035087.314916
454 Sequencing (SRP001808)
416
321
-
Ser
GCT
[SRA]
Identical group No.3663 (1 seq.)
>SRA1031666
SRR035087.467571
454 Sequencing (SRP001808)
318
223
-
Ser
GCT
[SRA]
Identical group No.3664 (1 seq.)
>SRA1032165
SRR035087.567130
454 Sequencing (SRP001808)
400
305
-
Ser
GCT
[SRA]
Identical group No.6085 (1 seq.)
>SRA1031274
SRR035087.405347
454 Sequencing (SRP001808)
335
242
-
Ser
GCT
[SRA]
Identical group No.8758 (1 seq.)
>SRA1031633
SRR035087.462537
454 Sequencing (SRP001808)
113
206
+
Ser
GCT
[SRA]
Identical group No.13436 (1 seq.)
>SRA1029620
SRR035087.152120
454 Sequencing (SRP001808)
199
291
+
Ser
GCT
[SRA]
Identical group No.13438 (1 seq.)
>SRA1031134
SRR035087.379105
454 Sequencing (SRP001808)
336
244
-
Ser
GCT
[SRA]
Identical group No.13441 (1 seq.)
>SRA1031937
SRR035087.515676
454 Sequencing (SRP001808)
226
317
+
Ser
GCT
[SRA]
Identical group No.21415 (1 seq.)
>SRA1029258
SRR035087.98763
454 Sequencing (SRP001808)
358
267
-
Ser
GCT
[SRA]
Identical group No.21420 (1 seq.)
>SRA1030434
SRR035087.279504
454 Sequencing (SRP001808)
45
136
+
Ser
GCT
[SRA]
Identical group No.21421 (1 seq.)
>SRA1030544
SRR035087.292856
454 Sequencing (SRP001808)
77
166
+
Ser
GCT
[SRA]
Identical group No.21432 (1 seq.)
>SRA1031950
SRR035087.518374
454 Sequencing (SRP001808)
281
190
-
Ser
GCT
[SRA]
Identical group No.21438 (1 seq.)
>SRA1032400
SRR035087.622604
454 Sequencing (SRP001808)
129
218
+
Ser
GCT
[SRA]
Identical group No.32921 (1 seq.)
>SRA1028787
SRR035087.6726
454 Sequencing (SRP001808)
99
9
-
Ser
GCT
[SRA]
Identical group No.32925 (1 seq.)
>SRA1029067
SRR035087.68996
454 Sequencing (SRP001808)
3
93
+
Ser
GCT
[SRA]
Identical group No.32928 (1 seq.)
>SRA1029561
SRR035087.145757
454 Sequencing (SRP001808)
431
342
-
Ser
GCT
[SRA]
Identical group No.32933 (1 seq.)
>SRA1030952
SRR035087.353885
454 Sequencing (SRP001808)
257
347
+
Ser
GCT
[SRA]
Identical group No.32940 (1 seq.)
>SRA1032370
SRR035087.614476
454 Sequencing (SRP001808)
104
15
-
Ser
GCT
[SRA]
Identical group No.49586 (1 seq.)
>SRA1029130
SRR035087.78985
454 Sequencing (SRP001808)
376
287
-
Ser
GCT
[SRA]
Identical group No.49589 (3 seq.)
>SRA1029355
SRR035087.114957
454 Sequencing (SRP001808)
120
31
-
Ser
GCT
[SRA]
>SRA1030131
SRR035087.231571
454 Sequencing (SRP001808)
119
30
-
Ser
GCT
[SRA]
>SRA1030444
SRR035087.280417
454 Sequencing (SRP001808)
119
30
-
Ser
GCT
[SRA]
Identical group No.49593 (1 seq.)
>SRA1029593
SRR035087.149666
454 Sequencing (SRP001808)
216
303
+
Ser
GCT
[SRA]
Identical group No.49599 (1 seq.)
>SRA1030120
SRR035087.230082
454 Sequencing (SRP001808)
186
97
-
Ser
GCT
[SRA]
Identical group No.49600 (1 seq.)
>SRA1030314
SRR035087.261618
454 Sequencing (SRP001808)
132
45
-
Ser
GCT
[SRA]
Identical group No.49614 (1 seq.)
>SRA1031467
SRR035087.433848
454 Sequencing (SRP001808)
170
259
+
Ser
GCT
[SRA]
Identical group No.49619 (1 seq.)
>SRA1031822
SRR035087.494936
454 Sequencing (SRP001808)
422
511
+
Ser
GCT
[SRA]
Identical group No.74726 (1 seq.)
>SRA1029346
SRR035087.113019
454 Sequencing (SRP001808)
145
233
+
Ser
GCT
[SRA]
Identical group No.74751 (1 seq.)
>SRA1031677
SRR035087.469841
454 Sequencing (SRP001808)
483
397
-
Ser
GCT
[SRA]
Identical group No.74767 (1 seq.)
>SRA1029270
SRR035087.100726
454 Sequencing (SRP001808)
410
325
-
Ser
GCT
[SRA]
Identical group No.90545 (1 seq.)
>SRA1029577
SRR035087.148133
454 Sequencing (SRP001808)
370
456
+
Ser
GCT
[SRA]
Identical group No.90550 (1 seq.)
>SRA1029764
SRR035087.177851
454 Sequencing (SRP001808)
95
8
-
Ser
GCT
[SRA]
Identical group No.90554 (1 seq.)
>SRA1029850
SRR035087.191717
454 Sequencing (SRP001808)
48
135
+
Ser
GCT
[SRA]
Identical group No.90559 (1 seq.)
>SRA1030076
SRR035087.224421
454 Sequencing (SRP001808)
178
91
-
Ser
GCT
[SRA]
Identical group No.90602 (1 seq.)
>SRA1032094
SRR035087.551128
454 Sequencing (SRP001808)
200
113
-
Ser
GCT
[SRA]
Identical group No.118317 (1 seq.)
>SRA1029926
SRR035087.203121
454 Sequencing (SRP001808)
24
107
+
Ser
GCT
[SRA]
Identical group No.118330 (1 seq.)
>SRA1030276
SRR035087.254840
454 Sequencing (SRP001808)
243
329
+
Ser
GCT
[SRA]
Identical group No.118335 (1 seq.)
>SRA1030722
SRR035087.320109
454 Sequencing (SRP001808)
439
353
-
Ser
GCT
[SRA]
Identical group No.118356 (1 seq.)
>SRA1031289
SRR035087.406696
454 Sequencing (SRP001808)
132
46
-
Ser
GCT
[SRA]
Identical group No.118388 (1 seq.)
>SRA1032136
SRR035087.559883
454 Sequencing (SRP001808)
126
211
+
Ser
GCT
[SRA]
Identical group No.118416 (1 seq.)
>SRA1030461
SRR035087.282017
454 Sequencing (SRP001808)
112
197
+
Ser
GCT
[SRA]
Identical group No.157511 (1 seq.)
>SRA1030780
SRR035087.331179
454 Sequencing (SRP001808)
260
175
-
Ser
GCT
[SRA]
Identical group No.186091 (1 seq.)
>SRA1030598
SRR035087.302748
454 Sequencing (SRP001808)
235
316
+
Ser
GCT
[SRA]
Identical group No.186094 (1 seq.)
>SRA1030766
SRR035087.328984
454 Sequencing (SRP001808)
181
97
-
Ser
GCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK