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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = TCA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.171 (5 seq.)
>W1710892322
LNDP01000024
Acidobacteriota
Acidobacteria bacterium Ga0074141 [LNDP]
888685
888587
-
SeC(p)
TCA
[ENA]
¡û
>WENV180291997
OBIV01259570
[OBIV] soil metagenome; Clay
116
214
+
SeC
TCA
[ENA]
¢þ
>WENV170646244
JQGG01077370
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
206
304
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170708825
LNFM01000001
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
857051
856953
-
SeC(p)
TCA
[ENA]
¢þ
>W1610752588
LNDP01000024
Acidobacteriota
Acidobacteria bacterium Ga0074141 [LNDP]
888685
888587
-
SeC(p)
TCA
[ENA]
¡û
Identical group No.580 (4 seq.)
>W1710893027
LNEI01000019
Acidobacteriota
Acidobacteria bacterium Ga0077534 [LNEI]
19018
19115
+
SeC(p)
TCA
[ENA]
¡û
>WENV170555766
CXWL01002141
[CXWL] groundwater metagenome; biofilm material
276063
276160
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170708913
LNFM01000025
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
33146
33049
-
SeC(p)
TCA
[ENA]
¢þ
>W1610753293
LNEI01000019
Acidobacteriota
Acidobacteria bacterium Ga0077534 [LNEI]
19018
19115
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.843 (9 seq.)
>WENV180354503
OBLQ011824559
[OBLQ] soil metagenome; soil
123
26
-
SeC
TCA
[ENA]
¢þ
>WENV183683207
ORMF010547676
[ORMF] groundwater metagenome; groundwater
1235
1138
-
SeC
TCA
[ENA]
¢þ
>WENV183685696
ORMF010886303
[ORMF] groundwater metagenome; groundwater
2827
2730
-
SeC
TCA
[ENA]
¢þ
>WENV183686963
ORMF011076380
[ORMF] groundwater metagenome; groundwater
267
170
-
SeC
TCA
[ENA]
¢þ
>W1720003006
MNEY01000158
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
22573
22476
-
SeC
TCA
[ENA]
¡û
>W1720003011
MNGU01000149
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_56_11 [MNGU]
7605
7702
+
SeC
TCA
[ENA]
¡û
>W1720003013
MNHW01000053
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_56_5 [MNHW]
11297
11200
-
SeC
TCA
[ENA]
¡û
>W1720003014
MNHX01000143
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_56_11 [MNHX]
8703
8606
-
SeC
TCA
[ENA]
¡û
>W1720003021
MNKP01000177
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_55_15 [MNKP]
6241
6144
-
SeC
TCA
[ENA]
¡û
Identical group No.1014 (3 seq.)
>W1711576096
MNKK01000116
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_7 [MNKK]
8167
8264
+
SeC(p)
TCA
[ENA]
¡û
>WENV180295480
OBIZ01113705
[OBIZ] soil metagenome; soil
350
253
-
SeC
TCA
[ENA]
¢þ
>WENV180352339
OBLQ010227372
[OBLQ] soil metagenome; soil
507
410
-
SeC
TCA
[ENA]
¢þ
Identical group No.2731 (5 seq.)
>W1710892202
LNDN01000127
Acidobacteriota
Acidobacteria bacterium Ga0077522 [LNDN]
15600
15695
+
SeC(p)
TCA
[ENA]
¡û
>WENV180693318
OCZS011145835
[OCZS] soil metagenome; soil
114
19
-
SeC
TCA
[ENA]
¢þ
>WENV170711148
LNFM01003754
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
614
519
-
SeC(p)
TCA
[ENA]
¢þ
>C161083720
CP015136
Acidobacteriota
Luteitalea pratensis DSM 100886; HEG_-6_39 [CP015136]
6873294
6873199
-
SeC(p)
TCA
-
¡û
>W1610752468
LNDN01000127
Acidobacteriota
Acidobacteria bacterium Ga0077522 [LNDN]
15600
15695
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.2809 (4 seq.)
>WENV180692253
OCZS010428806
[OCZS] soil metagenome; soil
185
280
+
SeC
TCA
[ENA]
¢þ
>WENV181192974
OEPS011278546
[OEPS] soil metagenome; soil
179
84
-
SeC
TCA
[ENA]
¢þ
>WENV183670974
ORJL011010619
[ORJL] groundwater metagenome; groundwater
412
507
+
SeC
TCA
[ENA]
¢þ
>W1910697884
MELE01000126
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b [MELE]
4579
4674
+
Sec
TCA
[ENA]
¡û
Identical group No.4289 (3 seq.)
>W1710893865
LNFE01000149
Acidobacteriota
Acidobacteria bacterium Ga0077553 [LNFE]
4768
4674
-
SeC(p)
TCA
[ENA]
¡û
>WENV170712124
LNFM01009911
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4227
4133
-
SeC(p)
TCA
[ENA]
¢þ
>W1610754131
LNFE01000149
Acidobacteriota
Acidobacteria bacterium Ga0077553 [LNFE]
4768
4674
-
SeC(p)
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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