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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic characterization of a wastewater treatment plant (SRP000180)
Anticodon = CAA
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.93347 (1 seq.)
>SRA1002003
SRR001308.176473
Metagenomic characterization of a wastewater treatment plant (SRP000180)
239
152
-
Leu
CAA
[SRA]
Identical group No.122849 (4 seq.)
>WENV181169066
OEIV010000213
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
19440
19356
-
Leu
CAA
[ENA]
¢þ
>W1911647229
QAJI01000001
Bacteroidota
Taibaiella sp. KBW10 [QAJI]
650208
650122
-
Leu
CAA
[ENA]
¡û
>SRA1002073
SRR001308.226070
Metagenomic characterization of a wastewater treatment plant (SRP000180)
240
156
-
Leu
CAA
[SRA]
>W1810762394
QPMM01000011
Bacteroidota
Chitinophaga silvatica GDMCC 1.1288 [QPMM]
157074
156990
-
Leu
CAA
[ENA]
¡û
Identical group No.123052 (1 seq.)
>SRA1001920
SRR001308.132659
Metagenomic characterization of a wastewater treatment plant (SRP000180)
142
56
-
Leu
CAA
[SRA]
Identical group No.123056 (1 seq.)
>SRA1002041
SRR001308.203314
Metagenomic characterization of a wastewater treatment plant (SRP000180)
164
78
-
Leu
CAA
[SRA]
Identical group No.123064 (2 seq.)
>WENV180027188
FTIX01000304
[FTIX] metagenome; soil
3910
3824
-
Leu
CAA
[ENA]
¢þ
>SRA1002295
SRR001308.355035
Metagenomic characterization of a wastewater treatment plant (SRP000180)
131
45
-
Leu
CAA
[SRA]
Identical group No.160414 (1 seq.)
>SRA1001971
SRR001308.156113
Metagenomic characterization of a wastewater treatment plant (SRP000180)
22
107
+
Leu
CAA
[SRA]
Identical group No.160415 (1 seq.)
>SRA1002087
SRR001308.234591
Metagenomic characterization of a wastewater treatment plant (SRP000180)
71
156
+
Leu
CAA
[SRA]
Identical group No.160450 (1 seq.)
>SRA1001870
SRR001308.102414
Metagenomic characterization of a wastewater treatment plant (SRP000180)
239
155
-
Leu
CAA
[SRA]
Identical group No.184707 (6 seq.)
>W131223773
AUCH01000016
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
64868
64784
-
Leu
CAA
[ENA]
¡û
>WENV170009702
APMI01001999
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
819
735
-
Leu
CAA
[ENA]
¢þ
>WENV170011839
APMI01095670
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
33
117
+
Leu
CAA
[ENA]
¢þ
>W1910828090
MWUM01000030
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
45469
45553
+
Leu
CAA
[ENA]
¡û
>W1810005474
BFBP01000002
Betaproteobacteria
Azospira sp. I13 [BFBP]
170624
170540
-
Leu
CAA
[ENA]
¡û
>SRA1002314
SRR001308.371072
Metagenomic characterization of a wastewater treatment plant (SRP000180)
162
246
+
Leu
CAA
[SRA]
Identical group No.190251 (2 seq.)
>SRA1001805
SRR001308.64761
Metagenomic characterization of a wastewater treatment plant (SRP000180)
250
166
-
Leu
CAA
[SRA]
>SRA1002195
SRR001308.298410
Metagenomic characterization of a wastewater treatment plant (SRP000180)
250
166
-
Leu
CAA
[SRA]
Identical group No.220682 (1 seq.)
>SRA1002049
SRR001308.210246
Metagenomic characterization of a wastewater treatment plant (SRP000180)
66
149
+
Leu
CAA
[SRA]
Identical group No.232739 (1 seq.)
>SRA1001958
SRR001308.148885
Metagenomic characterization of a wastewater treatment plant (SRP000180)
254
175
-
Leu
CAA
[SRA]
Identical group No.247833 (1 seq.)
>SRA1001905
SRR001308.117791
Metagenomic characterization of a wastewater treatment plant (SRP000180)
165
242
+
Leu
CAA
[SRA]
Identical group No.288832 (36 seq.)
>W1711281613
LZMI01000036
Actinomycetota
Gordonia sp. 852002-51296_SCH5728562-b [LZMI]
2318
2394
+
Leu
CAA
[ENA]
¡û
>W1711281900
LZMO01000088
Actinomycetota
Gordonia sp. 852002-10350_SCH5691597 [LZMO]
2320
2396
+
Leu
CAA
[ENA]
¡û
>W1711286476
LZTC01000055
Actinomycetota
Gordonia sp. 852002-50395_SCH5434458 [LZTC]
69861
69937
+
Leu
CAA
[ENA]
¡û
>W1711286495
LZTD01000012
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-a [LZTD]
6962
7038
+
Leu
CAA
[ENA]
¡û
>W1711286565
LZTE01000053
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-c [LZTE]
19691
19615
-
Leu
CAA
[ENA]
¡û
>W1711784514
MVPX01000265
Actinomycetota
Gordonia sp. i37 [MVPX]
3226
3302
+
Leu
CAA
[ENA]
¡û
>W131186285
ARVZ01000001
Actinomycetota
Gordonia polyisoprenivorans HW436 [ARVZ]
2223990
2223914
-
Leu
CAA
[ENA]
¡û
>W131239460
BANR01000027
Actinomycetota
Gordonia aichiensis NBRC 108223 [BANR]
883
807
-
Leu
CAA
[ENA]
¡û
>W131239720
BANX01000029
Actinomycetota
Gordonia soli NBRC 108243 [BANX]
25521
25597
+
Leu
CAA
[ENA]
¡û
>WENV181371547
OFQV01016193
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
378
452
+
Leu
CAA
[ENA]
¢þ
>WENV181379035
OFRC01011282
[OFRC] wastewater metagenome; Exp Tend CN 10WW
709
633
-
Leu
CAA
[ENA]
¢þ
>WENV181380814
OFRE01008357
[OFRE] wastewater metagenome; Exp Tend NO 50WW
507
583
+
Leu
CAA
[ENA]
¢þ
>WENV170552641
CXWK01000897
[CXWK] wastewater metagenome; activated sludge
48525
48601
+
Leu
CAA
[ENA]
¢þ
>WENV170553161
CXWK01009421
[CXWK] wastewater metagenome; activated sludge
67
141
+
Leu
CAA
[ENA]
¢þ
>WENV170975337
MTKZ01000171
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
53906
53982
+
Leu
CAA
[ENA]
¢þ
>C191117167
CP033972
Actinomycetota
Gordonia insulae MMS17-SY073 [CP033972]
392868
392792
-
Leu
CAA
-
¡û
>W09109077
ABTV01000006
Actinomycetota
Gordonia bronchialis DSM 43247 [ABTV]
274105
274181
+
Leu
CAA
[ENA]
¡û
>W1910424382
FVPM01000194
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1064 [FVPM]
6512
6436
-
Leu
CAA
[ENA]
¡û
>W1911747404
QWDJ02000013
Bacillota
Kroppenstedtia sanguinis X0209 [QWDJ]
53863
53939
+
Leu
CAA
[ENA]
¡û
>SRA1001835
SRR001308.81349
Metagenomic characterization of a wastewater treatment plant (SRP000180)
253
177
-
Leu
CAA
[SRA]
>C10107070
CP001802
Actinomycetota
Gordonia bronchialis DSM 43247 [CP001802]
3096174
3096250
+
Leu
CAA
[Ensembl]
¡û
>W1511640293
LDTZ01000015
Actinomycetota
Gordonia jacobaea mv1 [LDTZ]
64402
64478
+
Leu
CAA
[ENA]
¡û
>C121006206
CP003119
Actinomycetota
Gordonia polyisoprenivorans VH2 [CP003119]
3013624
3013700
+
Leu
CAA
[Ensembl]
¡û
>W121123659
BAED01000056
Actinomycetota
Gordonia amarae NBRC 15530 [BAED]
72231
72307
+
Leu
CAA
[ENA]
¡û
>W121123707
BAEE01000063
Actinomycetota
Gordonia araii NBRC 100433 [BAEE]
60449
60525
+
Leu
CAA
[ENA]
¡û
>W121123857
BAEH01000073
Actinomycetota
Gordonia effusa NBRC 100432 [BAEH]
54981
55055
+
Leu
CAA
[ENA]
¡û
>W121124350
BAFC01000127
Actinomycetota
Gordonia sputi NBRC 100414 [BAFC]
17524
17600
+
Leu
CAA
[ENA]
¡û
>W121126597
BAHC01000164
Actinomycetota
Gordonia rhizosphera NBRC 16068 [BAHC]
16012
16088
+
Leu
CAA
[ENA]
¡û
>W1610062142
BCNF01000048
Actinomycetota
Gordonia desulfuricans NBRC 100010 [BCNF]
20743
20667
-
Leu
CAA
[ENA]
¡û
>W1611040898
LZMI01000036
Actinomycetota
Gordonia sp. 852002-51296_SCH5728562-b [LZMI]
2318
2394
+
Leu
CAA
[ENA]
¡û
>W1611041185
LZMO01000088
Actinomycetota
Gordonia sp. 852002-10350_SCH5691597 [LZMO]
2320
2396
+
Leu
CAA
[ENA]
¡û
>W1611044037
LZTC01000055
Actinomycetota
Gordonia sp. 852002-50395_SCH5434458 [LZTC]
69861
69937
+
Leu
CAA
[ENA]
¡û
>W1611044056
LZTD01000012
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-a [LZTD]
6962
7038
+
Leu
CAA
[ENA]
¡û
>W1611044126
LZTE01000053
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-c [LZTE]
19691
19615
-
Leu
CAA
[ENA]
¡û
>W1710059683
BCNF01000048
Actinomycetota
Gordonia desulfuricans NBRC 100010 [BCNF]
20743
20667
-
Leu
CAA
[ENA]
¡û
>W1710598144
FTNT01000012
Actinomycetota
Williamsia sterculiae [FTNT]
16966
17042
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK