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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic characterization of a wastewater treatment plant (SRP000180)
Anticodon = CGA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.22540 (1 seq.)
>SRA1002191
SRR001308.296695
Metagenomic characterization of a wastewater treatment plant (SRP000180)
155
246
+
Ser
CGA
[SRA]
Identical group No.34514 (1 seq.)
>SRA1001873
SRR001308.104077
Metagenomic characterization of a wastewater treatment plant (SRP000180)
256
166
-
Ser
CGA
[SRA]
Identical group No.34516 (1 seq.)
>SRA1002124
SRR001308.257993
Metagenomic characterization of a wastewater treatment plant (SRP000180)
61
151
+
Ser
CGA
[SRA]
Identical group No.52717 (1 seq.)
>SRA1001789
SRR001308.53743
Metagenomic characterization of a wastewater treatment plant (SRP000180)
47
134
+
Ser
CGA
[SRA]
Identical group No.76312 (2 seq.)
>SRA1002094
SRR001308.236394
Metagenomic characterization of a wastewater treatment plant (SRP000180)
8
96
+
Ser
CGA
[SRA]
>SRA1002329
SRR001308.377594
Metagenomic characterization of a wastewater treatment plant (SRP000180)
8
96
+
Ser
CGA
[SRA]
Identical group No.91965 (12 seq.)
>W1711385786
MEEP01000157
Nitrospirota
Nitrospira sp. SCN 59-13 [MEEP]
5499
5586
+
Ser
CGA
[ENA]
¡û
>WENV180283465
OBID01000166
[OBID] metagenome; sludge
5955
5868
-
Ser
CGA
[ENA]
¢þ
>WENV181172013
OEIV010445097
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
119
32
-
Ser
CGA
[ENA]
¢þ
>WENV181188684
OEOE01273166
[OEOE] activated sludge metagenome; Activated Sludge
152
65
-
Ser
CGA
[ENA]
¢þ
>WENV181189649
OEOF01132298
[OEOF] activated sludge metagenome; Activated Sludge
28
115
+
Ser
CGA
[ENA]
¢þ
>WENV181192700
OEPS010942234
[OEPS] soil metagenome; soil
44
131
+
Ser
CGA
[ENA]
¢þ
>WENV170551312
CXWJ01003861
[CXWJ] wastewater metagenome; activated sludge
3912
3825
-
Ser
CGA
[ENA]
¢þ
>WENV170553045
CXWK01006189
[CXWK] wastewater metagenome; activated sludge
27650
27737
+
Ser
CGA
[ENA]
¢þ
>WENV170974940
MTKY01081545
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3909
3996
+
Ser
CGA
[ENA]
¢þ
>W1910441958
FWEX01000006
Nitrospirota
Nitrospira sp. ND1 [FWEX]
205833
205920
+
Ser
CGA
[ENA]
¡û
>SRA1001951
SRR001308.145059
Metagenomic characterization of a wastewater treatment plant (SRP000180)
178
265
+
Ser
CGA
[SRA]
>C10109751
FP929003
Nitrospirota
Nitrospira defluvii [FP929003]
1645265
1645178
-
Ser
CGA
[Ensembl]
¡û
Identical group No.93349 (1 seq.)
>SRA1002281
SRR001308.345538
Metagenomic characterization of a wastewater treatment plant (SRP000180)
38
125
+
Ser
CGA
[SRA]
Identical group No.123059 (1 seq.)
>SRA1002184
SRR001308.292521
Metagenomic characterization of a wastewater treatment plant (SRP000180)
105
190
+
Ser
CGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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