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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GGA
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8789 (3 seq.)
>WENV170008047
AMZC01000589
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
2871
2964
+
Ser
GGA
[ENA]
¢þ
>C121008076
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
1414542
1414449
-
Ser
GGA
[Ensembl]
¡û
>W1710594070
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
1745148
1745241
+
Ser
GGA
[ENA]
¡û
Identical group No.9867 (1 seq.)
>W11138595
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
1244736
1244829
+
Ser
GGA
[ENA]
¡û
Identical group No.11419 (4 seq.)
>WENV181409165
OGCI01000019
[OGCI] hot springs metagenome; Hot spring water
59847
59754
-
Ser
GGA
[ENA]
¢þ
>W09110161
ABUW01000011
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
10469
10562
+
Ser
GGA
[ENA]
¡û
>C10112973
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
771968
772061
+
Ser
GGA
[Ensembl]
¡û
>W121031644
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
1092029
1091936
-
Ser
GGA
[ENA]
¡û
Identical group No.11700 (1 seq.)
>W141278975
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
977176
977083
-
Ser
GGA
[ENA]
¡û
Identical group No.12651 (4 seq.)
>WENV170676930
LDZS01003215
[LDZS] terrestrial metagenome; oil reservoir sample K3
11708
11800
+
Ser
GGA
[ENA]
¢þ
>WENV170970466
MTKW01071699
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1441
1349
-
Ser
GGA
[ENA]
¢þ
>W1610613298
LGFQ01000035
Synergistota
Synergistales bacterium 54_24 [LGFQ]
11708
11800
+
Ser
GGA
[ENA]
¡û
>W1710734505
LGFQ01000035
Synergistota
Synergistales bacterium 54_24 [LGFQ]
11708
11800
+
Ser
GGA
[ENA]
¡û
Identical group No.16240 (5 seq.)
>W1711137634
LVBQ01000098
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
363
271
-
Ser
GGA
[ENA]
¡û
>WENV181311884
OFJB01019174
[OFJB] sludge metagenome; sludge
188
280
+
Ser
GGA
[ENA]
¢þ
>WENV170685913
LFRM01115407
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
880
788
-
Ser
GGA
[ENA]
¢þ
>WENV170722891
LSQX01247460
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
689
597
-
Ser
GGA
[ENA]
¢þ
>W1610948754
LVBQ01000098
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
363
271
-
Ser
GGA
[ENA]
¡û
Identical group No.16803 (2 seq.)
>W09126639
ACJX01000213
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
98084
97992
-
Ser
GGA
[ENA]
¡û
>W1710530824
FNPD01000002
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
101144
101052
-
Ser
GGA
[ENA]
¡û
Identical group No.20899 (14 seq.)
>C171050550
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
2220560
2220651
+
Ser
GGA
-
¡û
>WENV181908556
OGYB01000102
[OGYB] human gut metagenome; faeces
181
272
+
Ser
GGA
[ENA]
¢þ
>WENV181914815
OGYF01001290
[OGYF] human gut metagenome; faeces
19372
19281
-
Ser
GGA
[ENA]
¢þ
>WENV182006037
OHBE01052280
[OHBE] human gut metagenome; faeces
492
583
+
Ser
GGA
[ENA]
¢þ
>WENV182031178
OHCS01004556
[OHCS] human gut metagenome; feces
2241
2150
-
Ser
GGA
[ENA]
¢þ
>WENV182143768
OHKV01022117
[OHKV] human gut metagenome; feces
117
26
-
Ser
GGA
[ENA]
¢þ
>WENV182172591
OHMY01020663
[OHMY] human gut metagenome; feces
665
574
-
Ser
GGA
[ENA]
¢þ
>WENV182180472
OHNO01001248
[OHNO] human gut metagenome; feces
8970
9061
+
Ser
GGA
[ENA]
¢þ
>WENV182212688
OHQG01003723
[OHQG] human gut metagenome; feces
1614
1705
+
Ser
GGA
[ENA]
¢þ
>WENV182216014
OHQM01011770
[OHQM] human gut metagenome; feces
808
899
+
Ser
GGA
[ENA]
¢þ
>WENV182220923
OHQS01018667
[OHQS] human gut metagenome; feces
652
743
+
Ser
GGA
[ENA]
¢þ
>WENV183038978
OLGB01002262
[OLGB] human gut metagenome; faeces
20719
20628
-
Ser
GGA
[ENA]
¢þ
>W141452032
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
888151
888242
+
Ser
GGA
[ENA]
¡û
>W121000504
ACUH01000059
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
33253
33344
+
Ser
GGA
[ENA]
¡û
Identical group No.21606 (8 seq.)
>W1712039390
NFJQ01000012
Synergistota
Cloacibacillus sp. An23 [NFJQ]
123933
124024
+
Ser
GGA
[ENA]
¡û
>WENV182686903
OJNZ01069138
[OJNZ] human gut metagenome; human gut
130
221
+
Ser
GGA
[ENA]
¢þ
>W141701209
JMKI01000037
Synergistota
Synergistes jonesii [JMKI]
85335
85426
+
Ser
GGA
[ENA]
¡û
>W1710629251
JPZQ01000047
Synergistota
Synergistes jonesii [JPZQ]
30752
30843
+
Ser
GGA
[ENA]
¡û
>W1710629295
JPZR01000037
Synergistota
Synergistes jonesii [JPZR]
18113
18204
+
Ser
GGA
[ENA]
¡û
>W1710629337
JPZS01000040
Synergistota
Synergistes jonesii [JPZS]
30753
30844
+
Ser
GGA
[ENA]
¡û
>W1710631818
JQEK01000006
Synergistota
Synergistes jonesii [JQEK]
13117
13208
+
Ser
GGA
[ENA]
¡û
>W1710631885
JQEL01000042
Synergistota
Synergistes jonesii [JQEL]
30751
30842
+
Ser
GGA
[ENA]
¡û
Identical group No.79612 (3 seq.)
>W141146859
AWWC01000018
Synergistota
Jonquetella sp. BV3C21 [AWWC]
84751
84663
-
Ser
GGA
[ENA]
¡û
>W09132961
ACOO02000017
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
84985
84897
-
Ser
GGA
[ENA]
¡û
>W121017507
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
89725
89637
-
Ser
GGA
[ENA]
¡û
Identical group No.91369 (4 seq.)
>W1711629547
MPPC01000010
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
25562
25649
+
Ser
GGA
[ENA]
¡û
>WENV170656034
JTFN01119172
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
304
217
-
Ser
GGA
[ENA]
¢þ
>WENV170719191
LSQX01104951
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
79672
79759
+
Ser
GGA
[ENA]
¢þ
>C10100325
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
1243808
1243721
-
Ser
GGA
[Ensembl]
¡û
Identical group No.91550 (15 seq.)
>WENV180007764
FLSA01272712
[FLSA] metagenome; saliva
14
101
+
Ser
GGA
[ENA]
¢þ
>WENV180728857
ODGU01109234
[ODGU] human metagenome; G_DNA_Supragingival plaque
32
119
+
Ser
GGA
[ENA]
¢þ
>WENV180731826
ODGW01018463
[ODGW] human metagenome; G_DNA_Supragingival plaque
215
302
+
Ser
GGA
[ENA]
¢þ
>WENV180735218
ODGZ01100439
[ODGZ] human metagenome; G_DNA_Supragingival plaque
253
166
-
Ser
GGA
[ENA]
¢þ
>WENV180751496
ODHS01059350
[ODHS] human metagenome; G_DNA_Supragingival plaque
325
412
+
Ser
GGA
[ENA]
¢þ
>WENV180797918
ODJB01163948
[ODJB] human metagenome; G_DNA_Supragingival plaque
23
110
+
Ser
GGA
[ENA]
¢þ
>WENV180944896
ODUC01045089
[ODUC] human metagenome; G_DNA_Supragingival plaque
792
705
-
Ser
GGA
[ENA]
¢þ
>WENV180981908
ODVE01085494
[ODVE] human metagenome; G_DNA_Supragingival plaque
326
239
-
Ser
GGA
[ENA]
¢þ
>WENV181050391
ODYD01016075
[ODYD] human metagenome; G_DNA_Supragingival plaque
1734
1647
-
Ser
GGA
[ENA]
¢þ
>WENV181077177
OEAP01030520
[OEAP] human metagenome; G_DNA_Supragingival plaque
209
296
+
Ser
GGA
[ENA]
¢þ
>WENV181080843
OEAS01089344
[OEAS] human metagenome; G_DNA_Supragingival plaque
573
486
-
Ser
GGA
[ENA]
¢þ
>WENV181091807
OEBC01093759
[OEBC] human metagenome; G_DNA_Supragingival plaque
482
569
+
Ser
GGA
[ENA]
¢þ
>WENV181182742
OEJV01037750
[OEJV] human metagenome; G_DNA_Supragingival plaque
479
392
-
Ser
GGA
[ENA]
¢þ
>WENV183509824
OMHJ01018228
[OMHJ] human oral metagenome; human oral
353
440
+
Ser
GGA
[ENA]
¢þ
>C161104028
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
1440647
1440734
+
Ser
GGA
-
¡û
Identical group No.92492 (7 seq.)
>WENV183515985
OMKS01114947
[OMKS] sediment metagenome; hot spring sediment
283
196
-
Ser
GGA
[ENA]
¢þ
>WENV170677150
LDZT01003252
[LDZT] terrestrial metagenome; oil reservoir sample SB1
7322
7235
-
Ser
GGA
[ENA]
¢þ
>WENV170679054
LDZU01006809
[LDZU] terrestrial metagenome; oil reservoir sample SB2
2805
2718
-
Ser
GGA
[ENA]
¢þ
>W1610613611
LGGB01000004
Synergistota
Synergistales bacterium 53_16 [LGGB]
7322
7235
-
Ser
GGA
[ENA]
¡û
>W1610614501
LGHG01000060
Synergistota
Synergistales bacterium 54_9 [LGHG]
2805
2718
-
Ser
GGA
[ENA]
¡û
>W1710734783
LGGB01000004
Synergistota
Synergistales bacterium 53_16 [LGGB]
7322
7235
-
Ser
GGA
[ENA]
¡û
>W1710735482
LGHG01000060
Synergistota
Synergistales bacterium 54_9 [LGHG]
2805
2718
-
Ser
GGA
[ENA]
¡û
Identical group No.92965 (5 seq.)
>WENV181229939
OFEK01000130
[OFEK] activated sludge metagenome; Anaerobic digester
15285
15198
-
Ser
GGA
[ENA]
¢þ
>WENV170678341
LDZT01014011
[LDZT] terrestrial metagenome; oil reservoir sample SB1
44425
44338
-
Ser
GGA
[ENA]
¢þ
>WENV170678512
LDZU01001298
[LDZU] terrestrial metagenome; oil reservoir sample SB2
3164
3251
+
Ser
GGA
[ENA]
¢þ
>W1610613693
LGGE01000004
Synergistota
Synergistales bacterium 57_84 [LGGE]
44425
44338
-
Ser
GGA
[ENA]
¡û
>W1710734846
LGGE01000004
Synergistota
Synergistales bacterium 57_84 [LGGE]
44425
44338
-
Ser
GGA
[ENA]
¡û
Identical group No.97673 (4 seq.)
>WENV181989160
OHAO01003787
[OHAO] human gut metagenome; faeces
3311
3398
+
Ser
GGA
[ENA]
¢þ
>WENV183763946
PPYE01311292
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
30599
30686
+
Ser
GGA
[ENA]
¢þ
>W10113040
ADFP01000093
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
15860
15773
-
Ser
GGA
[ENA]
¡û
>W11116267
ADFP01000093
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
15860
15773
-
Ser
GGA
[ENA]
¡û
Identical group No.100080 (2 seq.)
>WENV183714149
PDWI01169990
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
135
48
-
Ser
GGA
[ENA]
¢þ
>W09108927
ABTR01000008
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
36518
36605
+
Ser
GGA
[ENA]
¡û
Identical group No.109006 (1 seq.)
>W1710608669
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
329528
329441
-
Ser
GGA
[ENA]
¡û
Identical group No.110704 (1 seq.)
>W1711744489
MUHX01000009
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
55764
55851
+
Ser
GGA
[ENA]
¡û
Identical group No.110762 (1 seq.)
>C121005701
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1243662
1243575
-
Ser
GGA
[Ensembl]
¡û
Identical group No.110876 (1 seq.)
>W141278994
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
962484
962571
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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