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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
Anticodon = GGA
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.15226 (1 seq.)
>SRA1003110
SRR002326.204961
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
110
201
+
Ser
GGA
[SRA]
Identical group No.17862 (1 seq.)
>SRA1004141
SRR002328.168169
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
137
228
+
Ser
GGA
[SRA]
Identical group No.22050 (15 seq.)
>W1710861849
LMDY01000001
Betaproteobacteria
Methylibium sp. Root1272 [LMDY]
488558
488648
+
Ser
GGA
[ENA]
¡û
>C013944
CP000555
Betaproteobacteria
Methylibium petroleiphilum PM1 [CP000555]
2076048
2075958
-
Ser
GGA
[Ensembl]
¡û
>WENV181227193
OFDN01003130
[OFDN] hot springs metagenome; Water
6459
6370
-
Ser
GGA
[ENA]
¢þ
>W141207215
AZND01000096
Betaproteobacteria
Methylibium sp. T29 [AZND]
3764
3674
-
Ser
GGA
[ENA]
¡û
>W141214265
AZSN01000137
Betaproteobacteria
Methylibium sp. T29-B [AZSN]
9450
9540
+
Ser
GGA
[ENA]
¡û
>WENV170551727
CXWJ01019461
[CXWJ] wastewater metagenome; activated sludge
766
676
-
Ser
GGA
[ENA]
¢þ
>WENV170559615
CXWL01134074
[CXWL] groundwater metagenome; biofilm material
573
663
+
Ser
GGA
[ENA]
¢þ
>C191064742
CP029606
Betaproteobacteria
Methylibium sp. Pch-M [CP029606]
3756764
3756854
+
Ser
GGA
-
¡û
>W09101365
AAEM01000001
Betaproteobacteria
Methylibium petroleiphilum PM1 [AAEM]
766123
766213
+
Ser
GGA
[ENA]
¡û
>SRA1003734
SRR002327.150987
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
158
68
-
Ser
GGA
[SRA]
>W1810666665
QJOU01000060
Betaproteobacteria
Piscinibacter caeni MQ-18 [QJOU]
15974
16064
+
Ser
GGA
[ENA]
¡û
>W1510021362
BBYR01000041
Betaproteobacteria
Piscinibacter sakaiensis 201-F6 [BBYR]
50801
50711
-
Ser
GGA
[ENA]
¡û
>W1511552115
JZUE01000017
Betaproteobacteria
Aquincola tertiaricarbonis MIMtkpLc11 [JZUE]
127466
127556
+
Ser
GGA
[ENA]
¡û
>WENV074550
AACY023982647
Marine microbial communities from Global Ocean Sampling (GOS)
104
12
-
Ser
GGA
[ENA]
>W1610724195
LMDY01000001
Betaproteobacteria
Methylibium sp. Root1272 [LMDY]
488558
488648
+
Ser
GGA
[ENA]
¡û
Identical group No.22052 (88 seq.)
>W1710867406
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
1129296
1129206
-
Ser
GGA
[ENA]
¡û
>W1710870184
LMKH01000036
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
312468
312378
-
Ser
GGA
[ENA]
¡û
>W1710870906
LMKW01000010
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
14808
14718
-
Ser
GGA
[ENA]
¡û
>W1710871245
LMLD01000015
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
41055
41145
+
Ser
GGA
[ENA]
¡û
>W1710872323
LMLW01000013
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
98269
98359
+
Ser
GGA
[ENA]
¡û
>W1710877229
LMPX01000003
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
591526
591616
+
Ser
GGA
[ENA]
¡û
>W1710912528
LNRR01000006
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
25954
25864
-
Ser
GGA
[ENA]
¡û
>W1710912625
LNRT01000012
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
158036
158126
+
Ser
GGA
[ENA]
¡û
>W1710913013
LNSC01000025
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
14393
14483
+
Ser
GGA
[ENA]
¡û
>W1710913057
LNSD01000005
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
152585
152675
+
Ser
GGA
[ENA]
¡û
>W1711072366
LSHN01000044
Alphaproteobacteria
Blastomonas sp. CCH13-E1 [LSHN]
138
48
-
Ser
GGA
[ENA]
¡û
>W1711072580
LSHS01000110
Alphaproteobacteria
Blastomonas sp. CCH8-A3 [LSHS]
167368
167278
-
Ser
GGA
[ENA]
¡û
>W1711072640
LSHU01000002
Alphaproteobacteria
Blastomonas sp. CCH7-E1 [LSHU]
43570
43660
+
Ser
GGA
[ENA]
¡û
>W1711072842
LSHZ01000025
Alphaproteobacteria
Blastomonas sp. CCH4-D12 [LSHZ]
5437
5527
+
Ser
GGA
[ENA]
¡û
>W1711075039
LSKB01000056
Alphaproteobacteria
Blastomonas sp. CCH11-A4 [LSKB]
70765
70675
-
Ser
GGA
[ENA]
¡û
>W1711146776
LVJD01000261
Alphaproteobacteria
Sphingobium yanoikuyae [LVJD]
9293
9203
-
Ser
GGA
[ENA]
¡û
>W1712105797
NISJ01000016
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
28042
27952
-
Ser
GGA
[ENA]
¡û
>W1712105841
NISK01000005
Alphaproteobacteria
Sphingopyxis bauzanensis [NISK]
108145
108055
-
Ser
GGA
[ENA]
¡û
>C171094556
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
1177003
1177093
+
Ser
GGA
-
¡û
>C171095057
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
2763298
2763388
+
Ser
GGA
-
¡û
>C171108880
CP020538
Alphaproteobacteria
Sphingobium herbicidovorans MH [CP020538]
1099916
1099826
-
Ser
GGA
-
¡û
>C171128440
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
1697090
1697000
-
Ser
GGA
-
¡û
>W131002989
AGZU01000007
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
278713
278803
+
Ser
GGA
[ENA]
¡û
>W131058863
ANFZ01000006
Alphaproteobacteria
Blastomonas sp. AAP53 [ANFZ]
389183
389093
-
Ser
GGA
[ENA]
¡û
>W131160203
AQWK01000001
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AQWK]
334889
334799
-
Ser
GGA
[ENA]
¡û
>W131196375
ASTG01000024
Alphaproteobacteria
Sphingobium bisphenolivorans YL23 [ASTG]
42674
42584
-
Ser
GGA
[ENA]
¡û
>C019729
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
1688353
1688443
+
Ser
GGA
[Ensembl]
¡û
>WENV180105126
OAPD01007384
[OAPD] marine metagenome; 2010
581
671
+
Ser
GGA
[ENA]
¢þ
>W141193341
AYSC01000031
Alphaproteobacteria
Blastomonas sp. CACIA14H2 [AYSC]
47136
47046
-
Ser
GGA
[ENA]
¡û
>WENV170379891
CETV01249451
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
851
761
-
Ser
GGA
[ENA]
¢þ
>WENV170709919
LNFM01000919
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
68127
68217
+
Ser
GGA
[ENA]
¢þ
>WENV170735580
LULL01004537
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
713
623
-
Ser
GGA
[ENA]
¢þ
>WENV170745655
LULY01022250
[LULY] marine metagenome; Red Sea water column Station 91 - depth 200m
618
708
+
Ser
GGA
[ENA]
¢þ
>WENV170761393
LUMV01000185
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
6866
6776
-
Ser
GGA
[ENA]
¢þ
>WENV170974945
MTKY01081665
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1171
1261
+
Ser
GGA
[ENA]
¢þ
>C191002750
AP018518
Alphaproteobacteria
Sphingobium sp. YG1 [AP018518, AP018519]
3246958
3247048
+
Ser
GGA
-
¡û
>C191163782
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
137145
137055
-
Ser
GGA
-
¡û
>C191185545
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
3786721
3786811
+
Ser
GGA
-
¡û
>W1911718563
QQWL01000003
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env11_0417 [QQWL]
64564
64474
-
Ser
GGA
[ENA]
¡û
>W1911718839
QQWR01000007
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt10_0210 [QQWR]
109126
109216
+
Ser
GGA
[ENA]
¡û
>W1911719248
QQXA01000002
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt14_0612 [QQXA]
179241
179331
+
Ser
GGA
[ENA]
¡û
>W1911719319
QQXB01000006
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt16_1112 [QQXB]
179293
179383
+
Ser
GGA
[ENA]
¡û
>W1911720597
QQYH01000004
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env40_0817 [QQYH]
79851
79761
-
Ser
GGA
[ENA]
¡û
>W1911720871
QQYN01000003
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env34_0717 [QQYN]
154508
154418
-
Ser
GGA
[ENA]
¡û
>W1911721154
QQYT01000005
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env28_0717 [QQYT]
135729
135639
-
Ser
GGA
[ENA]
¡û
>W1911721559
QQZC01000006
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env22_0617 [QQZC]
135729
135639
-
Ser
GGA
[ENA]
¡û
>SRA1003198
SRR002326.299386
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
74
164
+
Ser
GGA
[SRA]
>SRA1003611
SRR002327.67714
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
189
99
-
Ser
GGA
[SRA]
>SRA1003718
SRR002327.143032
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
237
147
-
Ser
GGA
[SRA]
>W1810476729
QAOF01000008
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
68829
68739
-
Ser
GGA
[ENA]
¡û
>W1810486913
QAYE01000009
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
231094
231184
+
Ser
GGA
[ENA]
¡û
>W1810658668
QJJM01000004
Alphaproteobacteria
Blastomonas natatoria DSM 3183 [QJJM]
171433
171523
+
Ser
GGA
[ENA]
¡û
>W1810677137
QKMM01000013
Alphaproteobacteria
Novosphingobium sp. B3058 49 [QKMM]
88336
88426
+
Ser
GGA
[ENA]
¡û
>SRA1014211
SRR023845.40899
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
120
210
+
Ser
GGA
[SRA]
>SRA1014270
SRR023845.66824
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
23
113
+
Ser
GGA
[SRA]
>SRA1014344
SRR023845.98183
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
70
160
+
Ser
GGA
[SRA]
>SRA1014695
SRR023845.267065
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
136
46
-
Ser
GGA
[SRA]
>SRA1014752
SRR023845.299518
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
86
176
+
Ser
GGA
[SRA]
>SRA1014881
SRR023845.360767
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
120
210
+
Ser
GGA
[SRA]
>SRA1015165
SRR023845.483365
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
239
149
-
Ser
GGA
[SRA]
>SRA1015825
SRR023846.215393
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
73
163
+
Ser
GGA
[SRA]
>SRA1016474
SRR023846.517298
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
104
194
+
Ser
GGA
[SRA]
>C151044379
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
2268676
2268766
+
Ser
GGA
[Ensembl]
¡û
>W1510019749
BBXA01000029
Alphaproteobacteria
Novosphingobium sp. MD-1 [BBXA]
49008
49098
+
Ser
GGA
[ENA]
¡û
>W11176451
AFXE01000128
Alphaproteobacteria
Sphingobium yanoikuyae XLDN2-5 [AFXE]
14140
14050
-
Ser
GGA
[ENA]
¡û
>C161054528
CP013264
Alphaproteobacteria
Sphingobium baderi DE-13 [CP013264]
1005058
1005148
+
Ser
GGA
[Ensembl]
¡û
>C161055627
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
2798815
2798725
-
Ser
GGA
[Ensembl]
¡û
>W121086737
AKKE01000127
Alphaproteobacteria
Novosphingobium sp. AP12 [AKKE]
27888
27798
-
Ser
GGA
[ENA]
¡û
>W1610072040
BCUN01000064
Alphaproteobacteria
Sphingobium amiense NBRC 102518 [BCUN]
5222
5132
-
Ser
GGA
[ENA]
¡û
>W1610550591
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
2146610
2146520
-
Ser
GGA
[ENA]
¡û
>W1610732530
LMKH01000036
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
312468
312378
-
Ser
GGA
[ENA]
¡û
>W1610733252
LMKW01000010
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
14808
14718
-
Ser
GGA
[ENA]
¡û
>W1610734669
LMLW01000013
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
98269
98359
+
Ser
GGA
[ENA]
¡û
>W1610739575
LMPX01000003
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
591526
591616
+
Ser
GGA
[ENA]
¡û
>W1610770887
LNRR01000006
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
25954
25864
-
Ser
GGA
[ENA]
¡û
>W1610770984
LNRT01000012
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
158036
158126
+
Ser
GGA
[ENA]
¡û
>W1610771372
LNSC01000025
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
14393
14483
+
Ser
GGA
[ENA]
¡û
>W1610771416
LNSD01000005
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
152585
152675
+
Ser
GGA
[ENA]
¡û
>W1610911626
LSHN01000044
Alphaproteobacteria
Blastomonas sp. CCH13-E1 [LSHN]
138
48
-
Ser
GGA
[ENA]
¡û
>W1610911840
LSHS01000110
Alphaproteobacteria
Blastomonas sp. CCH8-A3 [LSHS]
167368
167278
-
Ser
GGA
[ENA]
¡û
>W1610911900
LSHU01000002
Alphaproteobacteria
Blastomonas sp. CCH7-E1 [LSHU]
43570
43660
+
Ser
GGA
[ENA]
¡û
>W1610912102
LSHZ01000025
Alphaproteobacteria
Blastomonas sp. CCH4-D12 [LSHZ]
5437
5527
+
Ser
GGA
[ENA]
¡û
>W1610914344
LSKB01000056
Alphaproteobacteria
Blastomonas sp. CCH11-A4 [LSKB]
70765
70675
-
Ser
GGA
[ENA]
¡û
>W1710069242
BCUN01000064
Alphaproteobacteria
Sphingobium amiense NBRC 102518 [BCUN]
5222
5132
-
Ser
GGA
[ENA]
¡û
>W1710571540
FOVZ01000006
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
241997
242087
+
Ser
GGA
[ENA]
¡û
>W1710573617
FOXP01000008
Alphaproteobacteria
Sphingomonas rubra [FOXP]
155484
155574
+
Ser
GGA
[ENA]
¡û
>W1710592156
FRCG01000004
Alphaproteobacteria
Sphingobium sp. YR657 [FRCG]
455884
455794
-
Ser
GGA
[ENA]
¡û
>W1710660354
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
2146610
2146520
-
Ser
GGA
[ENA]
¡û
Identical group No.23042 (1 seq.)
>SRA1002985
SRR002326.136529
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
46
136
+
Ser
GGA
[SRA]
Identical group No.23044 (1 seq.)
>SRA1003143
SRR002326.239915
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
114
204
+
Ser
GGA
[SRA]
Identical group No.24558 (1 seq.)
>SRA1003767
SRR002327.170743
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
204
291
+
Ser
GGA
[SRA]
Identical group No.34296 (3 seq.)
>WENV181379414
OFRD01001269
[OFRD] wastewater metagenome; Exp Tend CN 100WW
4556
4645
+
Ser
GGA
[ENA]
¢þ
>SRA1002997
SRR002326.145056
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
147
58
-
Ser
GGA
[SRA]
>SRA1004006
SRR002328.91900
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
115
204
+
Ser
GGA
[SRA]
Identical group No.34297 (1 seq.)
>SRA1003047
SRR002326.170029
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
45
134
+
Ser
GGA
[SRA]
Identical group No.34298 (7 seq.)
>W141265969
CCJP01000005
Betaproteobacteria
Polaromonas sp. CG9_12 CJ2 [CCJP]
159901
159990
+
Ser
GGA
[ENA]
¡û
>W141565129
JIBH01000001
Betaproteobacteria
Polaromonas sp. EUR3 1.2.1 [JIBH]
1826904
1826815
-
Ser
GGA
[ENA]
¡û
>W1910699886
MERZ01000203
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11 [MERZ]
153
242
+
Ser
GGA
[ENA]
¡û
>SRA1003123
SRR002326.220178
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
60
149
+
Ser
GGA
[SRA]
>SRA1003559
SRR002327.31702
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
98
9
-
Ser
GGA
[SRA]
>W1610076217
BCYO01000025
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
2006
1917
-
Ser
GGA
[ENA]
¡û
>W1710074032
BCYO01000025
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
2006
1917
-
Ser
GGA
[ENA]
¡û
Identical group No.34302 (1 seq.)
>SRA1003391
SRR002326.432974
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
94
5
-
Ser
GGA
[SRA]
Identical group No.34630 (18 seq.)
>W141023471
AJXL01000049
Bacteroidota
Flavobacterium sp. ACAM 123 [AJXL]
6626
6537
-
Ser
GGA
[ENA]
¡û
>WENV181379392
OFRD01001083
[OFRD] wastewater metagenome; Exp Tend CN 100WW
2673
2760
+
Ser
GGA
[ENA]
¢þ
>WENV181384106
OFRH01017887
[OFRH] wastewater metagenome; Exp Tend NO 100WW
118
31
-
Ser
GGA
[ENA]
¢þ
>WENV183621230
OOFT01023009
[OOFT] marine metagenome; sea ice
564
651
+
Ser
GGA
[ENA]
¢þ
>WENV170559849
CXWL01161303
[CXWL] groundwater metagenome; biofilm material
1545
1634
+
Ser
GGA
[ENA]
¢þ
>W1810072199
PEFE01000001
Bacteroidota
Flavobacterium sp. 11 [PEFE]
684981
684894
-
Ser
GGA
[ENA]
¡û
>W1810121187
PHUE01000001
Bacteroidota
Flavobacterium sp. 5 [PHUE]
1728787
1728700
-
Ser
GGA
[ENA]
¡û
>W1810156537
PJBJ01000030
Bacteroidota
Flavobacterium sp. ALD4 [PJBJ]
1137075
1137162
+
Ser
GGA
[ENA]
¡û
>SRA1003836
SRR002327.220806
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
223
136
-
Ser
GGA
[SRA]
>W1810722608
QNUX01000011
Bacteroidota
Flavobacterium psychrolimnae LMG 22018 [QNUX]
57597
57684
+
Ser
GGA
[ENA]
¡û
>W1810723020
QNVY01000001
Bacteroidota
Flavobacterium petrolei Kopri-42 [QNVY]
240937
240850
-
Ser
GGA
[ENA]
¡û
>W1511390938
JSYM01000004
Bacteroidota
Flavobacterium sp. AED [JSYM]
59167
59078
-
Ser
GGA
[ENA]
¡û
>W1710517097
FNDB01000003
Bacteroidota
Flavobacterium omnivorum [FNDB]
275533
275444
-
Ser
GGA
[ENA]
¡û
>W1710533469
FNRD01000002
Bacteroidota
Flavobacterium gillisiae [FNRD]
66473
66384
-
Ser
GGA
[ENA]
¡û
>W1710539659
FNVP01000001
Bacteroidota
Flavobacterium urumqiense [FNVP]
252796
252707
-
Ser
GGA
[ENA]
¡û
>W1710548166
FODN01000007
Bacteroidota
Flavobacterium sinopsychrotolerans [FODN]
168760
168849
+
Ser
GGA
[ENA]
¡û
>W1710551340
FOFZ01000011
Bacteroidota
Flavobacterium frigoris [FOFZ]
40918
41007
+
Ser
GGA
[ENA]
¡û
>W1710592412
FRCL01000002
Bacteroidota
Flavobacterium xinjiangense [FRCL]
128825
128912
+
Ser
GGA
[ENA]
¡û
Identical group No.36028 (3 seq.)
>WENV170995777
MWWF01056854
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
227
316
+
Ser
GGA
[ENA]
¢þ
>WENV170996054
MWWF01129185
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
422
511
+
Ser
GGA
[ENA]
¢þ
>SRA1003917
SRR002328.33775
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
82
169
+
Ser
GGA
[SRA]
Identical group No.36819 (1 seq.)
>SRA1003788
SRR002327.186129
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
158
69
-
Ser
GGA
[SRA]
Identical group No.36820 (4 seq.)
>C017302
CP000529
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [CP000529]
2152465
2152554
+
Ser
GGA
[Ensembl]
¡û
>W09104863
AANM01000006
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
234160
234071
-
Ser
GGA
[ENA]
¡û
>W141695468
JMDZ01000004
Betaproteobacteria
Polaromonas glacialis [JMDZ]
80918
80829
-
Ser
GGA
[ENA]
¡û
>SRA1003797
SRR002327.189487
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
259
170
-
Ser
GGA
[SRA]
Identical group No.36821 (3 seq.)
>WENV181315227
OFJN01015515
[OFJN] marine metagenome; sea ice
98
187
+
Ser
GGA
[ENA]
¢þ
>WENV181324186
OFLC01003434
[OFLC] marine metagenome; melt pond
746
835
+
Ser
GGA
[ENA]
¢þ
>SRA1003845
SRR002327.227510
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
204
115
-
Ser
GGA
[SRA]
Identical group No.58588 (85 seq.)
>W1710853229
LLWK01000038
Bacteroidota
Flavobacterium sp. TAB 87 [LLWK]
627783
627868
+
Ser
GGA
[ENA]
¡û
>W1710914563
LNTP01000401
Bacteroidota
Flavobacterium psychrophilum [LNTP]
40681
40594
-
Ser
GGA
[ENA]
¡û
>W1710914599
LNTQ01000146
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
58134
58221
+
Ser
GGA
[ENA]
¡û
>W1711054002
LRTL01000006
Bacteroidota
Flavobacterium psychrophilum [LRTL]
340649
340734
+
Ser
GGA
[ENA]
¡û
>W131225428
AUDO01000009
Bacteroidota
Flavobacterium frigidarium DSM 17623 [AUDO]
37045
36958
-
Ser
GGA
[ENA]
¡û
>W1711431513
MIJV01000031
Bacteroidota
Flavobacterium psychrophilum [MIJV]
107885
107972
+
Ser
GGA
[ENA]
¡û
>W1711431542
MIJW01000027
Bacteroidota
Flavobacterium psychrophilum [MIJW]
112318
112403
+
Ser
GGA
[ENA]
¡û
>W1711712471
MTBY01000038
Bacteroidota
Flavobacterium psychrophilum [MTBY]
100132
100219
+
Ser
GGA
[ENA]
¡û
>W1711712504
MTBZ01000033
Bacteroidota
Flavobacterium psychrophilum [MTBZ]
100776
100861
+
Ser
GGA
[ENA]
¡û
>W1711712593
MTCB01000020
Bacteroidota
Flavobacterium psychrophilum [MTCB]
106116
106203
+
Ser
GGA
[ENA]
¡û
>W1711712626
MTCC01000022
Bacteroidota
Flavobacterium psychrophilum [MTCC]
108286
108373
+
Ser
GGA
[ENA]
¡û
>W1711712642
MTCD01000064
Bacteroidota
Flavobacterium psychrophilum [MTCD]
1565
1478
-
Ser
GGA
[ENA]
¡û
>C009509
AM398681
Bacteroidota
Flavobacterium psychrophilum JIP02/86 [AM398681]
2624029
2624116
+
Ser
GGA
[Ensembl]
¡û
>WENV180391224
OBPM01046922
[OBPM] marine metagenome; ENVO:00002010
245
330
+
Ser
GGA
[ENA]
¢þ
>C181220269
LT670843
Bacteroidota
Flavobacterium psychrophilum OSU THCO2-90 [LT670843]
2602337
2602422
+
Ser
GGA
-
¡û
>W1910184570
BJSV01000009
Bacteroidota
Flavobacterium psychrophilum NNS1-1804 [BJSV]
46854
46939
+
Ser
GGA
[ENA]
¡û
>W1910184612
BJSW01000010
Bacteroidota
Flavobacterium psychrophilum NNS2-1804 [BJSW]
47028
47113
+
Ser
GGA
[ENA]
¡û
>W1910184657
BJSX01000033
Bacteroidota
Flavobacterium psychrophilum NNS4-1804 [BJSX]
48218
48303
+
Ser
GGA
[ENA]
¡û
>W1910184704
BJSY01000049
Bacteroidota
Flavobacterium psychrophilum NNS5-1804 [BJSY]
46842
46927
+
Ser
GGA
[ENA]
¡û
>W1910184723
BJSZ01000007
Bacteroidota
Flavobacterium psychrophilum NNS6-1804 [BJSZ]
24965
24880
-
Ser
GGA
[ENA]
¡û
>W1910184763
BJTA01000010
Bacteroidota
Flavobacterium psychrophilum NNS7-1804 [BJTA]
24965
24880
-
Ser
GGA
[ENA]
¡û
>W1910184865
BJTD01000003
Bacteroidota
Flavobacterium psychrophilum KKAC-1706 [BJTD]
1121
1036
-
Ser
GGA
[ENA]
¡û
>W1910184911
BJTE01000014
Bacteroidota
Flavobacterium psychrophilum KKOK-1706 [BJTE]
938
853
-
Ser
GGA
[ENA]
¡û
>W1910184958
BJTF01000027
Bacteroidota
Flavobacterium psychrophilum KHIR-1705 [BJTF]
790
705
-
Ser
GGA
[ENA]
¡û
>W1910502973
FYBY01000008
Bacteroidota
Flavobacterium psychrophilum CH8 [FYBY]
40610
40525
-
Ser
GGA
[ENA]
¡û
>W1910503015
FYBZ01000023
Bacteroidota
Flavobacterium psychrophilum FRGDSA 1882/11 [FYBZ]
3188
3103
-
Ser
GGA
[ENA]
¡û
>W1910503053
FYCA01000041
Bacteroidota
Flavobacterium psychrophilum FI055 [FYCA]
35811
35726
-
Ser
GGA
[ENA]
¡û
>W1910503096
FYCB01000062
Bacteroidota
Flavobacterium psychrophilum DK150 [FYCB]
868
783
-
Ser
GGA
[ENA]
¡û
>W1910503111
FYCC01000022
Bacteroidota
Flavobacterium psychrophilum FI056 [FYCC]
168379
168294
-
Ser
GGA
[ENA]
¡û
>W1910503154
FYCD01000035
Bacteroidota
Flavobacterium psychrophilum DK001 [FYCD]
126467
126382
-
Ser
GGA
[ENA]
¡û
>W1910503181
FYCE01000040
Bacteroidota
Flavobacterium psychrophilum FI146 [FYCE]
244
159
-
Ser
GGA
[ENA]
¡û
>W1910503225
FYCF01000035
Bacteroidota
Flavobacterium psychrophilum DK002 [FYCF]
168431
168346
-
Ser
GGA
[ENA]
¡û
>W1910503254
FYCG01000038
Bacteroidota
Flavobacterium psychrophilum FI070 [FYCG]
56697
56782
+
Ser
GGA
[ENA]
¡û
>W1910503291
FYCH01000034
Bacteroidota
Flavobacterium psychrophilum CH1895 [FYCH]
51569
51654
+
Ser
GGA
[ENA]
¡û
>W1910503321
FYCI01000042
Bacteroidota
Flavobacterium psychrophilum DK095 [FYCI]
67950
68035
+
Ser
GGA
[ENA]
¡û
>W1910503539
FYCN01000063
Bacteroidota
Flavobacterium psychrophilum JIP 08/99 [FYCN]
9099
9014
-
Ser
GGA
[ENA]
¡û
>W1910503555
FYCO01000003
Bacteroidota
Flavobacterium psychrophilum IT02 [FYCO]
51640
51725
+
Ser
GGA
[ENA]
¡û
>W1910503606
FYCP01000136
Bacteroidota
Flavobacterium psychrophilum KU 051128-10 [FYCP]
46736
46821
+
Ser
GGA
[ENA]
¡û
>W1910503622
FYCQ01000124
Bacteroidota
Flavobacterium psychrophilum KU 061128-1 [FYCQ]
46748
46833
+
Ser
GGA
[ENA]
¡û
>W1910503637
FYCR01000026
Bacteroidota
Flavobacterium psychrophilum JIP 16/00 [FYCR]
13859
13944
+
Ser
GGA
[ENA]
¡û
>W1910503659
FYCS01000015
Bacteroidota
Flavobacterium psychrophilum IT09 [FYCS]
51569
51654
+
Ser
GGA
[ENA]
¡û
>W1910503723
FYCT01000062
Bacteroidota
Flavobacterium psychrophilum FI166 [FYCT]
46837
46922
+
Ser
GGA
[ENA]
¡û
>W1910503734
FYCU01000118
Bacteroidota
Flavobacterium psychrophilum KU 060626-4 [FYCU]
48212
48297
+
Ser
GGA
[ENA]
¡û
>W1910503759
FYCV01000140
Bacteroidota
Flavobacterium psychrophilum KU 060626-59 [FYCV]
197
112
-
Ser
GGA
[ENA]
¡û
>W1910503771
FYCW01000003
Bacteroidota
Flavobacterium psychrophilum LM-01-Fp [FYCW]
18590
18505
-
Ser
GGA
[ENA]
¡û
>W1910503807
FYCX01000001
Bacteroidota
Flavobacterium psychrophilum NO004 [FYCX]
49221
49306
+
Ser
GGA
[ENA]
¡û
>W1910503873
FYCY01000056
Bacteroidota
Flavobacterium psychrophilum NO014 [FYCY]
40608
40523
-
Ser
GGA
[ENA]
¡û
>W1910503908
FYCZ01000034
Bacteroidota
Flavobacterium psychrophilum LM-02-Fp [FYCZ]
51569
51654
+
Ser
GGA
[ENA]
¡û
>W1910503917
FYDA01000001
Bacteroidota
Flavobacterium psychrophilum NO042 [FYDA]
854
769
-
Ser
GGA
[ENA]
¡û
>W1910503981
FYDB01000047
Bacteroidota
Flavobacterium psychrophilum NO098 [FYDB]
313346
313261
-
Ser
GGA
[ENA]
¡û
>W1910503992
FYDC01000003
Bacteroidota
Flavobacterium psychrophilum NO083 [FYDC]
168433
168348
-
Ser
GGA
[ENA]
¡û
>W1910504129
FYDF01000102
Bacteroidota
Flavobacterium psychrophilum LVDJ XP189 [FYDF]
286
201
-
Ser
GGA
[ENA]
¡û
>W1910576496
JSCD01000009
Bacteroidota
Flavobacterium psychrophilum 10 [JSCD]
25843
25758
-
Ser
GGA
[ENA]
¡û
>W1910576617
JSWL01000002
Bacteroidota
Flavobacterium psychrophilum IWL08 [JSWL]
106116
106201
+
Ser
GGA
[ENA]
¡û
>W1910809510
MUHE01000025
Bacteroidota
Flavobacterium psychrophilum DSM 3660 = ATCC 49418 [MUHE]
790
705
-
Ser
GGA
[ENA]
¡û
>SRA1003537
SRR002327.6983
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
163
78
-
Ser
GGA
[SRA]
>C151018505
CP007206
Bacteroidota
Flavobacterium psychrophilum FPG101 [CP007206]
2611254
2611341
+
Ser
GGA
[Ensembl]
¡û
>C151018562
CP007207
Bacteroidota
Flavobacterium psychrophilum FPG3 [CP007207]
2535755
2535840
+
Ser
GGA
[Ensembl]
¡û
>C151030341
CP007627
Bacteroidota
Flavobacterium psychrophilum CSF259-93 [CP007627]
2660832
2660919
+
Ser
GGA
[Ensembl]
¡û
>C151038971
CP008878
Bacteroidota
Flavobacterium psychrophilum V3-5 [CP008878]
2438523
2438610
+
Ser
GGA
[Ensembl]
¡û
>C151039007
CP008881
Bacteroidota
Flavobacterium psychrophilum V4-24 [CP008881]
2424927
2425014
+
Ser
GGA
[Ensembl]
¡û
>C151039044
CP008883
Bacteroidota
Flavobacterium psychrophilum v4-33 [CP008883]
2439873
2439960
+
Ser
GGA
[Ensembl]
¡û
>C151039536
CP008902
Bacteroidota
Flavobacterium psychrophilum 950106-1/1 [CP008902]
2476838
2476925
+
Ser
GGA
[Ensembl]
¡û
>C151065061
CP010274
Bacteroidota
Flavobacterium psychrophilum 5 [CP010274]
2610301
2610388
+
Ser
GGA
-
¡û
>C151065109
CP010276
Bacteroidota
Flavobacterium psychrophilum PG2 [CP010276]
2612618
2612705
+
Ser
GGA
-
¡û
>C151072389
CP010798
Bacteroidota
Flavobacterium psychrophilum [CP010798]
2084730
2084815
+
Ser
GGA
-
¡û
>W1511357172
JRWA01000009
Bacteroidota
Flavobacterium psychrophilum CSF-259-93 [JRWA]
54457
54544
+
Ser
GGA
[ENA]
¡û
>W1511357214
JRWB01000025
Bacteroidota
Flavobacterium psychrophilum CN [JRWB]
54449
54536
+
Ser
GGA
[ENA]
¡û
>W1511357256
JRWC01000007
Bacteroidota
Flavobacterium psychrophilum CR [JRWC]
54442
54529
+
Ser
GGA
[ENA]
¡û
>W1511357304
JRWD01000118
Bacteroidota
Flavobacterium psychrophilum THC 02-90 [JRWD]
16708
16793
+
Ser
GGA
[ENA]
¡û
>W1511357351
JRWE01000119
Bacteroidota
Flavobacterium psychrophilum TN [JRWE]
16708
16793
+
Ser
GGA
[ENA]
¡û
>W1511357398
JRWF01000112
Bacteroidota
Flavobacterium psychrophilum TR [JRWF]
16707
16792
+
Ser
GGA
[ENA]
¡û
>C161024428
CP010275
Bacteroidota
Flavobacterium psychrophilum MH1 [CP010275]
2609797
2609884
+
Ser
GGA
-
¡û
>C161024476
CP010277
Bacteroidota
Flavobacterium psychrophilum VQ50 [CP010277]
2568760
2568847
+
Ser
GGA
-
¡û
>C161024524
CP010278
Bacteroidota
Flavobacterium psychrophilum 3 [CP010278]
2567394
2567481
+
Ser
GGA
-
¡û
>W1610062191
BCNG01000016
Bacteroidota
Flavobacterium psychrophilum [BCNG]
285
200
-
Ser
GGA
[ENA]
¡û
>W1610716353
LLWK01000038
Bacteroidota
Flavobacterium sp. TAB 87 [LLWK]
627783
627868
+
Ser
GGA
[ENA]
¡û
>W1610772922
LNTP01000401
Bacteroidota
Flavobacterium psychrophilum [LNTP]
40681
40594
-
Ser
GGA
[ENA]
¡û
>W1610772958
LNTQ01000146
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
58134
58221
+
Ser
GGA
[ENA]
¡û
>W1610895190
LRTL01000006
Bacteroidota
Flavobacterium psychrophilum [LRTL]
340649
340734
+
Ser
GGA
[ENA]
¡û
>W1710059732
BCNG01000016
Bacteroidota
Flavobacterium psychrophilum [BCNG]
285
200
-
Ser
GGA
[ENA]
¡û
>W1710087863
BDSH01000014
Bacteroidota
Flavobacterium psychrophilum [BDSH]
43005
43090
+
Ser
GGA
[ENA]
¡û
>W1710507316
FMVE01000003
Bacteroidota
Flavobacterium psychrophilum DSM 3660 [FMVE]
131890
131805
-
Ser
GGA
[ENA]
¡û
>W1710555826
FOJT01000003
Bacteroidota
Flavobacterium swingsii [FOJT]
234251
234164
-
Ser
GGA
[ENA]
¡û
>W1710585196
FQWE01000002
Bacteroidota
Flavobacterium segetis [FQWE]
352217
352130
-
Ser
GGA
[ENA]
¡û
Identical group No.59066 (10 seq.)
>C171100113
CP019799
Gammaproteobacteria
Cellvibrio sp. PSBB023 [CP019799]
492609
492696
+
Ser
GGA
-
¡û
>WENV180040856
LLBZ010018218
[LLBZ] soil metagenome; soil from tomato rhizosphere
2967
3054
+
Ser
GGA
[ENA]
¢þ
>C08003226
CP000934
Gammaproteobacteria
Cellvibrio japonicus Ueda107 [CP000934]
1806594
1806681
+
Ser
GGA
[Ensembl]
¡û
>W1910911061
NHNI01000002
Gammaproteobacteria
Cellvibrio mixtus PSBB022 [NHNI]
536887
536974
+
Ser
GGA
[ENA]
¡û
>SRA1003676
SRR002327.115536
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
213
126
-
Ser
GGA
[SRA]
>W1510018791
BBUL01000092
Gammaproteobacteria
Cellvibrio sp. OA-2007 [BBUL]
120095
120008
-
Ser
GGA
[ENA]
¡û
>W1511548618
JZSC01000002
Gammaproteobacteria
Cellvibrio sp. pealriver [JZSC]
7481
7568
+
Ser
GGA
[ENA]
¡û
>W121045186
AICM01000004
Gammaproteobacteria
Cellvibrio sp. BR [AICM]
143465
143378
-
Ser
GGA
[ENA]
¡û
>W1610005697
ALBT01000003
Gammaproteobacteria
Cellvibrio mixtus subsp. mixtus J3-8 [ALBT]
6379
6466
+
Ser
GGA
[ENA]
¡û
>W1710005458
ALBT01000003
Gammaproteobacteria
Cellvibrio mixtus subsp. mixtus J3-8 [ALBT]
6379
6466
+
Ser
GGA
[ENA]
¡û
Identical group No.60843 (1 seq.)
>SRA1003105
SRR002326.200485
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
238
150
-
Ser
GGA
[SRA]
Identical group No.67403 (1 seq.)
>SRA1004229
SRR002328.212721
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
118
205
+
Ser
GGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
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Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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