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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CAT
HIT:
25 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.323955 (9 seq.)
>FG090100698
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2882357
2882283
-
Met
CAT
[ENA]
¡û
>FG090100699
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2880621
2880546
-
Met
CAT
[ENA]
¡û
>FG090100738
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
383569
383494
-
Met
CAT
[ENA]
¡û
>FG090100779
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2816205
2816132
-
Met
CAT
[ENA]
¡û
>FG091100115
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
477647
477720
+
Met
CAT
[ENA]
¡û
>FG091100116
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
483047
483121
+
Met
CAT
[ENA]
¡û
>FG091100119
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
587587
587660
+
Met
CAT
[ENA]
¡û
>FG091100133
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1709477
1709404
-
Met
CAT
[ENA]
¡û
>FG091100134
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1625782
1625709
-
Met
CAT
[ENA]
¡û
Identical group No.340227 (5 seq.)
>FG090500010
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1598156
1598074
-
Met
CAT
[ENA]
¡û
>FG090700004
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
658451
658531
+
Met
CAT
[ENA]
¡û
>FG090800088
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
658451
658531
+
Met
CAT
[ENA]
¡û
>FG092810002
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
1485061
1484979
-
Met
CAT
[ENA]
¡û
>FU090900189
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1598155
1598075
-
Met
CAT
[ENA]
¡û
Identical group No.490184 (7 seq.)
>FG090100024
AE016816
Ascomycota
Ashbya gossypii ATCC 10895
439400
439326
-
Met
CAT
[ENA]
¡û
>FG090100445
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
794666
794740
+
Met
CAT
[ENA]
¡û
>FG090100478
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
146128
146054
-
Met
CAT
[ENA]
¡û
>FG090100489
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
2159001
2159075
+
Met
CAT
[ENA]
¡û
>FG091100022
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
900795
900867
+
Met
CAT
[ENA]
¡û
>FG091100024
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
1366448
1366374
-
Met
CAT
[ENA]
¡û
>FG091100027
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
1187054
1186980
-
Met
CAT
[ENA]
¡û
Identical group No.510138 (3 seq.)
>FG090100072
CR380947
Ascomycota
Candida glabrata CBS 138 CBS138
263901
263975
+
Met
CAT
[ENA]
¡û
>FG090100108
CR380951
Ascomycota
Candida glabrata CBS 138 CBS138
547229
547303
+
Met
CAT
[ENA]
¡û
>FG090100175
CR380956
Ascomycota
Candida glabrata CBS 138 CBS138
108599
108525
-
Met
CAT
[ENA]
¡û
Identical group No.510142 (9 seq.)
>FG090500005
CR382134
Ascomycota
Debaryomyces hansenii CBS767
512923
513011
+
Met
CAT
[ENA]
¡û
>FG090500009
CP000500
Ascomycota
Pichia stipitis CBS 6054
1459604
1459514
-
Met
CAT
[ENA]
¡û
>FG090800063
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1845875
1845963
+
Met
CAT
[ENA]
¡û
>FG090800064
CR382138
Ascomycota
Debaryomyces hansenii CBS767
467823
467911
+
Met
CAT
[ENA]
¡û
>FG090800065
CR382138
Ascomycota
Debaryomyces hansenii CBS767
1030584
1030496
-
Met
CAT
[ENA]
¡û
>FG090800086
CP000499
Ascomycota
Pichia stipitis CBS 6054
1250697
1250787
+
Met
CAT
[ENA]
¡û
>FG090800087
CP000499
Ascomycota
Pichia stipitis CBS 6054
724330
724242
-
Met
CAT
[ENA]
¡û
>FU090900091
CR382134
Ascomycota
Debaryomyces hansenii CBS767
512923
513011
+
Met
CAT
[ENA]
¡û
>FU090900180
CP000500
Ascomycota
Pichia stipitis CBS 6054
1459604
1459514
-
Met
CAT
[ENA]
¡û
Identical group No.536286 (10 seq.)
>WENV170659140
JXWR01000478
[JXWR] soil metagenome; rice field; ambient CO2
22
96
+
Met
CAT
[ENA]
¢þ
>WENV170659169
JXWR01001074
[JXWR] soil metagenome; rice field; ambient CO2
4408
4335
-
Met
CAT
[ENA]
¢þ
>WENV170659243
JXWR01002361
[JXWR] soil metagenome; rice field; ambient CO2
74
146
+
Met
CAT
[ENA]
¢þ
>WENV170659593
JXWR01011763
[JXWR] soil metagenome; rice field; ambient CO2
1308
1380
+
Met
CAT
[ENA]
¢þ
>WENV170668484
LAFL01001101
[LAFL] hot springs metagenome; hot springs water enriched for viruses sample NL10_1002_vDNA_WGA
42
115
+
Met
CAT
[ENA]
¢þ
>SC0100031
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
1175823
1175895
+
Met
CAT
[ENA]
¡û
>SC0100119
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
422931
423004
+
Met
CAT
[ENA]
¡û
>SC0100127
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
391111
391037
-
Met
CAT
[ENA]
¡û
>SC0100167
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
572954
572881
-
Met
CAT
[ENA]
¡û
>SC0100190
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
976418
976490
+
Met
CAT
[ENA]
¡û
Identical group No.597162 (1 seq.)
>FG090100390
AL590450
Microsporidia
Encephalitozoon_cuniculi_GB-M1
57751
57823
+
Met
CAT
[ENA]
¡û
Identical group No.675920 (3 seq.)
>FG090800019
AE017343
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
436970
436889
-
Met
CAT
[ENA]
¡û
>FG090800032
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
946754
946836
+
Met
CAT
[ENA]
¡û
>FG090800044
AE017350
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
938025
937943
-
Met
CAT
[ENA]
¡û
Identical group No.675934 (1 seq.)
>FG091100010
AE016815
Ascomycota
Ashbya gossypii ATCC 10895
468885
468957
+
Met
CAT
[ENA]
¡û
Identical group No.675941 (2 seq.)
>FG090100589
CP000500
Ascomycota
Pichia stipitis CBS 6054
1290439
1290368
-
Met
CAT
[ENA]
¡û
>FG091100073
CP000496
Ascomycota
Pichia stipitis CBS 6054
940129
940200
+
Met
CAT
[ENA]
¡û
Identical group No.687806 (2 seq.)
>FG090100709
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
72483
72554
+
Met
CAT
[ENA]
¡û
>FG090100765
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1728736
1728807
+
Met
CAT
[ENA]
¡û
Identical group No.698762 (1 seq.)
>FG090100318
CR382138
Ascomycota
Debaryomyces hansenii CBS767
1813531
1813604
+
Met
CAT
[ENA]
¡û
Identical group No.698774 (4 seq.)
>FG090100633
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
2434374
2434303
-
Met
CAT
[ENA]
¡û
>FG090100663
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1689817
1689889
+
Met
CAT
[ENA]
¡û
>FG092110004
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
1096474
1096546
+
Met
CAT
[ENA]
¡û
>FG092110017
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
4265253
4265325
+
Met
CAT
[ENA]
¡û
Identical group No.706737 (1 seq.)
>FG090100786
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
153373
153302
-
Met
CAT
[ENA]
¡û
Identical group No.706757 (3 seq.)
>FG090100268
CR382136
Ascomycota
Debaryomyces hansenii CBS767
511136
511064
-
Met
CAT
[ENA]
¡û
>FG090100573
CP000499
Ascomycota
Pichia stipitis CBS 6054
1065028
1064957
-
Met
CAT
[ENA]
¡û
>FG091100183
CR382135
Ascomycota
Debaryomyces hansenii CBS767
885007
884936
-
Met
CAT
[ENA]
¡û
Identical group No.714645 (1 seq.)
>FG090100041
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
486765
486837
+
Met
CAT
[ENA]
¡û
Identical group No.714646 (1 seq.)
>FG090100042
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
548347
548420
+
Met
CAT
[ENA]
¡û
Identical group No.714659 (15 seq.)
>WENV180295827
OBIZ01356731
[OBIZ] soil metagenome; soil
148
77
-
Met
CAT
[ENA]
¢þ
>WENV183751471
PPYE01014717
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1387
1458
+
Met
CAT
[ENA]
¢þ
>WENV170659230
JXWR01001867
[JXWR] soil metagenome; rice field; ambient CO2
176
247
+
Met
CAT
[ENA]
¢þ
>WENV170659404
JXWR01005032
[JXWR] soil metagenome; rice field; ambient CO2
14457
14386
-
Met
CAT
[ENA]
¢þ
>WENV170659668
JXWR01023096
[JXWR] soil metagenome; rice field; ambient CO2
283
212
-
Met
CAT
[ENA]
¢þ
>WENV170659709
JXWR01040799
[JXWR] soil metagenome; rice field; ambient CO2
35
106
+
Met
CAT
[ENA]
¢þ
>FG090100408
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
977209
977282
+
Met
CAT
[ENA]
¡û
>FG090100493
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
2376832
2376761
-
Met
CAT
[ENA]
¡û
>SC0100016
NC_001135
Ascomycota
Saccharomyces cerevisiae S288c
149918
149989
+
Met
CAT
[ENA]
¡û
>SC0100046
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
100133
100204
+
Met
CAT
[ENA]
¡û
>SC0100124
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
517877
517806
-
Met
CAT
[ENA]
¡û
>SC0100189
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
710202
710273
+
Met
CAT
[ENA]
¡û
>SC0100209
NC_001148
Ascomycota
Saccharomyces cerevisiae S288c
338918
338847
-
Met
CAT
[ENA]
¡û
>W1610134619
FABP01001512
Bacillota
Clostridioides difficile [FABP]
71
142
+
Met
CAT
[ENA]
¡û
>W1710136286
FABP01001512
Bacillota
Clostridioides difficile [FABP]
71
142
+
Met
CAT
[ENA]
¡û
Identical group No.728028 (2 seq.)
>FG090100707
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
516521
516450
-
Met
CAT
[ENA]
¡û
>FG090100742
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
579304
579375
+
Met
CAT
[ENA]
¡û
Identical group No.735078 (1 seq.)
>FG090100708
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
364869
364798
-
Met
CAT
[ENA]
¡û
Identical group No.752683 (2 seq.)
>FG091100121
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
684071
684142
+
Met
CAT
[ENA]
¡û
>FG091100126
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1453077
1453148
+
Met
CAT
[ENA]
¡û
Identical group No.752684 (1 seq.)
>FG091100138
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1433668
1433597
-
Met
CAT
[ENA]
¡û
Identical group No.754305 (5 seq.)
>WENV182597846
OJJC01001006
[OJJC] metagenome; faeces
850
921
+
Met
CAT
[ENA]
¢þ
>FG090100142
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
123988
124061
+
Met
CAT
[ENA]
¡û
>FG090100152
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
1072621
1072693
+
Met
CAT
[ENA]
¡û
>FG090100162
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
281293
281220
-
Met
CAT
[ENA]
¡û
>FG090100230
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
397826
397755
-
Met
CAT
[ENA]
¡û
Identical group No.772264 (1 seq.)
>FG090100448
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1228695
1228766
+
Met
CAT
[ENA]
¡û
Identical group No.782076 (3 seq.)
>FU090900063
AE017345
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
330187
330090
-
Met
CAT
[ENA]
¡û
>FG091900208
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
980363
980460
+
Met
CAT
[ENA]
¡û
>FG091900213
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
991640
991543
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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