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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463483 (100 seq.)
>W1710945882
LORR01000010
Gammaproteobacteria
Citrobacter koseri [LORR]
201242
201316
+
Arg
CCT
[ENA]
¡û
>W1711048525
LRPS01000054
Gammaproteobacteria
Citrobacter koseri [LRPS]
8612
8686
+
Arg
CCT
[ENA]
¡û
>W1711048556
LRPT01000007
Gammaproteobacteria
Citrobacter koseri [LRPT]
71235
71309
+
Arg
CCT
[ENA]
¡û
>W1711318568
MAYN01000008
Gammaproteobacteria
Pantoea eucrina [MAYN]
548334
548260
-
Arg
CCT
[ENA]
¡û
>W1711512715
MLFE01000004
Gammaproteobacteria
Pantoea allii [MLFE]
26983
26909
-
Arg
CCT
[ENA]
¡û
>W1711637533
MPWK03000081
Gammaproteobacteria
Klebsiella pneumoniae [MPWK]
307856
307930
+
Arg
CCT
[ENA]
¡û
>W1711640644
MPYG03000082
Gammaproteobacteria
Klebsiella pneumoniae [MPYG]
23248
23174
-
Arg
CCT
[ENA]
¡û
>W1711642602
MPZK03000038
Gammaproteobacteria
Klebsiella pneumoniae [MPZK]
307856
307930
+
Arg
CCT
[ENA]
¡û
>W1711666348
MRBS01000002
Gammaproteobacteria
Pantoea sp. 1.19 [MRBS]
320611
320685
+
Arg
CCT
[ENA]
¡û
>W1711678739
MRUL01000011
Gammaproteobacteria
Izhakiella australiensis D4N98 [MRUL]
108911
108985
+
Arg
CCT
[ENA]
¡û
>W1712019259
NEYM01000034
Gammaproteobacteria
Klebsiella pneumoniae [NEYM]
307856
307930
+
Arg
CCT
[ENA]
¡û
>W131211340
ATMJ01000002
Gammaproteobacteria
Tatumella ptyseos ATCC 33301 [ATMJ]
48470
48396
-
Arg
CCT
[ENA]
¡û
>W131243489
CAPB01000025
Gammaproteobacteria
Erwinia amylovora CFBP 1232 [CAPB]
24907
24978
+
Arg
CCT
[ENA]
¡û
>W131243678
CAPE01000017
Gammaproteobacteria
Erwinia amylovora MR1 [CAPE]
61630
61701
+
Arg
CCT
[ENA]
¡û
>WENV180225154
OBBM01000003
[OBBM] human gut metagenome; Infant 1 DOL 20 gut
366436
366510
+
Arg
CCT
[ENA]
¢þ
>WENV180310310
OBJT01000005
[OBJT] soil metagenome; soil
11046
10972
-
Arg
CCT
[ENA]
¢þ
>WENV180550495
OCJB01000001
[OCJB] human gut metagenome; Infant 1 DOL 18 gut
435793
435867
+
Arg
CCT
[ENA]
¢þ
>WENV180553145
OCJI01000001
[OCJI] human gut metagenome; Infant 1 DOL 24 gut
435793
435867
+
Arg
CCT
[ENA]
¢þ
>WENV180553394
OCJJ01000002
[OCJJ] human gut metagenome; Infant 1 DOL 26 gut
204631
204557
-
Arg
CCT
[ENA]
¢þ
>WENV180555888
OCJP01000004
[OCJP] human gut metagenome; Infant 1 DOL 11 gut
435793
435867
+
Arg
CCT
[ENA]
¢þ
>WENV180556197
OCJR01000003
[OCJR] human oral metagenome; Infant 1 DOL 23 oral
238571
238497
-
Arg
CCT
[ENA]
¢þ
>WENV180559904
OCKE01000003
[OCKE] human gut metagenome; Infant 1 DOL 14 gut
366436
366510
+
Arg
CCT
[ENA]
¢þ
>WENV180560125
OCKF01000001
[OCKF] human gut metagenome; Infant 1 DOL 15 gut
435793
435867
+
Arg
CCT
[ENA]
¢þ
>WENV180560597
OCKH01000005
[OCKH] human gut metagenome; Infant 1 DOL 17 gut
52540
52466
-
Arg
CCT
[ENA]
¢þ
>W141111693
AVSS01000036
Gammaproteobacteria
Pantoea dispersa EGD-AAK13 [AVSS]
49986
49912
-
Arg
CCT
[ENA]
¡û
>W141214561
AZTE01000004
Gammaproteobacteria
Pantoea ananatis Sd-1 [AZTE]
397020
397094
+
Arg
CCT
[ENA]
¡û
>W141223423
BADG01000174
Gammaproteobacteria
Pantoea sp. B40 [BADG]
16743
16669
-
Arg
CCT
[ENA]
¡û
>W141236040
BAYW01000015
Gammaproteobacteria
Erwinia amylovora NBRC 12687 [BAYW]
129820
129891
+
Arg
CCT
[ENA]
¡û
>W141256239
CBVS010000006
Gammaproteobacteria
Erwinia amylovora LA635 [CBVS]
1596384
1596455
+
Arg
CCT
[ENA]
¡û
>W141276915
JAEE01000005
Gammaproteobacteria
Phaseolibacter flectens ATCC 12775 [JAEE]
7022
7096
+
Arg
CCT
[ENA]
¡û
>WENV182953796
OKVZ01000304
[OKVZ] human gut metagenome; human gut
1639
1565
-
Arg
CCT
[ENA]
¢þ
>WENV170000353
AEWW01016820
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
102
28
-
Arg
CCT
[ENA]
¢þ
>WENV170000413
AEWW01026499
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
9010
9084
+
Arg
CCT
[ENA]
¢þ
>C181064761
CP022427
Gammaproteobacteria
Pantoea ananatis YJ76 [CP022427]
860697
860623
-
Arg
CCT
-
¡û
>C181083696
CP023527
Gammaproteobacteria
Citrobacter koseri FDAARGOS_393 [CP023527]
3193701
3193775
+
Arg
CCT
-
¡û
>C181084898
CP023567
Gammaproteobacteria
Erwinia pyrifoliae EpK1/15 [CP023567]
2613291
2613217
-
Arg
CCT
-
¡û
>C181138298
CP026709
Gammaproteobacteria
Citrobacter koseri AR_0024 [CP026709]
3701290
3701364
+
Arg
CCT
-
¡û
>C181217616
LS483499
Gammaproteobacteria
Tatumella ptyseos NCTC11468 [LS483499]
2347261
2347335
+
Arg
CCT
-
¡û
>C191111784
CP033780
Gammaproteobacteria
Citrobacter koseri FDAARGOS_530 [CP033780]
2655734
2655660
-
Arg
CCT
-
¡û
>C191155829
CP037950
Gammaproteobacteria
Erwinia sp. QL-Z3 [CP037950]
4849263
4849337
+
Arg
CCT
-
¡û
>W141701035
JMJL01000003
Gammaproteobacteria
Pantoea ananatis BD442 [JMJL]
585526
585600
+
Arg
CCT
[ENA]
¡û
>W141710929
JMPR01000028
Gammaproteobacteria
Tatumella ptyseos ATCC 33301 [JMPR]
48634
48560
-
Arg
CCT
[ENA]
¡û
>W1910760933
MNKY01000005
Gammaproteobacteria
Erwinia sp. OLMDSP33 [MNKY]
50093
50167
+
Arg
CCT
[ENA]
¡û
>W1910768727
MOMA01000009
Gammaproteobacteria
Erwinia sp. OLTSP20 [MOMA]
77422
77496
+
Arg
CCT
[ENA]
¡û
>W1910994171
NKXT01000004
Gammaproteobacteria
Pantoea ananatis 1.38 [NKXT]
150189
150263
+
Arg
CCT
[ENA]
¡û
>W1911081508
NMZU01000001
Gammaproteobacteria
Pantoea ananatis PANS 01-2 [NMZU]
914467
914541
+
Arg
CCT
[ENA]
¡û
>W1911081580
NMZV01000001
Gammaproteobacteria
Pantoea ananatis PANS 04-2 [NMZV]
1288321
1288395
+
Arg
CCT
[ENA]
¡û
>W1911081801
NMZY01000001
Gammaproteobacteria
Pantoea ananatis PNA 06-1 [NMZY]
316590
316516
-
Arg
CCT
[ENA]
¡û
>W1911174247
NQJK01000004
Gammaproteobacteria
Erwinia amylovora MASHBO [NQJK]
217648
217577
-
Arg
CCT
[ENA]
¡û
>W1911174343
NQJL01000001
Gammaproteobacteria
Erwinia amylovora VTDMSF02 [NQJL]
1351442
1351371
-
Arg
CCT
[ENA]
¡û
>W1911174568
NQJO01000001
Gammaproteobacteria
Erwinia amylovora CTBT3-1 [NQJO]
1332711
1332640
-
Arg
CCT
[ENA]
¡û
>W1911174795
NQJS01000019
Gammaproteobacteria
Erwinia amylovora UT5P4 [NQJS]
64058
63987
-
Arg
CCT
[ENA]
¡û
>W1911174960
NQJU01000032
Gammaproteobacteria
Erwinia amylovora OR1 [NQJU]
1590965
1591036
+
Arg
CCT
[ENA]
¡û
>W1911175113
NQJW01000022
Gammaproteobacteria
Erwinia amylovora NHSB01-1 [NQJW]
64215
64144
-
Arg
CCT
[ENA]
¡û
>W1911175244
NQJY01000023
Gammaproteobacteria
Erwinia amylovora LA092 [NQJY]
1591420
1591491
+
Arg
CCT
[ENA]
¡û
>W1911175549
NQKC01000103
Gammaproteobacteria
Erwinia amylovora CA3R [NQKC]
130134
130208
+
Arg
CCT
[ENA]
¡û
>W1911284327
NTMH01000011
Gammaproteobacteria
Pantoea allii LMG 24248 [NTMH]
405780
405854
+
Arg
CCT
[ENA]
¡û
>W1911496853
OCMY01000001
Gammaproteobacteria
Pantoea floridensis JKS000234 [OCMY]
3219618
3219544
-
Arg
CCT
[ENA]
¡û
>W1810053911
PDET01000002
Gammaproteobacteria
Pantoea coffeiphila 342 [PDET]
17266
17192
-
Arg
CCT
[ENA]
¡û
>W1810153822
PIYO01000024
Gammaproteobacteria
Klebsiella pneumoniae KP1 [PIYO]
43268
43342
+
Arg
CCT
[ENA]
¡û
>W1810501518
QBJB02000004
Gammaproteobacteria
Pantoea sp. RIT 413 [QBJB]
257095
257169
+
Arg
CCT
[ENA]
¡û
>W1810573417
QEKS01000003
Gammaproteobacteria
Pantoea ananatis PNA 14-1 [QEKS]
472936
473010
+
Arg
CCT
[ENA]
¡û
>W1810624755
QHHL01000050
Gammaproteobacteria
Citrobacter koseri L168 [QHHL]
3883513
3883587
+
Arg
CCT
[ENA]
¡û
>W1810696034
QLSY01000002
Gammaproteobacteria
Pantoea ananatis PNA 86-1 [QLSY]
235293
235219
-
Arg
CCT
[ENA]
¡û
>W1810722752
QNVM01000004
Gammaproteobacteria
Pantoea sp. 3_1284 [QNVM]
177742
177816
+
Arg
CCT
[ENA]
¡û
>C151061105
CP009880
Gammaproteobacteria
Pantoea sp. PSNIH1 [CP009880]
71976
72050
+
Arg
CCT
[Ensembl]
¡û
>W1510092971
CEFO01000002
Gammaproteobacteria
Enterobacter ludwigii EnVs6 [CEFO]
427976
428050
+
Arg
CCT
[ENA]
¡û
>W1510093141
CEFQ01000005
Gammaproteobacteria
Enterobacter ludwigii EnVs2 [CEFQ]
920918
920992
+
Arg
CCT
[ENA]
¡û
>C10105545
FN666575
Gammaproteobacteria
Erwinia amylovora ATCC 49946 [FN666575]
2559955
2560026
+
Arg
CCT
[Ensembl]
¡û
>WENV11100711
AEWW01016820
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
102
28
-
Arg
CCT
[ENA]
¡û
>WENV11100771
AEWW01026499
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
9010
9084
+
Arg
CCT
[ENA]
¡û
>W1510644208
CVNG01000037
Gammaproteobacteria
Pantoea ananatis S7 [CVNG]
9697
9771
+
Arg
CCT
[ENA]
¡û
>C11108956
CP002124
Gammaproteobacteria
Erwinia sp. Ejp617 [CP002124]
3793355
3793426
+
Arg
CCT
[Ensembl]
¡û
>W1511356702
JRUP01000014
Gammaproteobacteria
Enterobacter cancerogenus M004 [JRUP]
474691
474765
+
Arg
CCT
[ENA]
¡û
>W1511402141
JTJJ01000005
Gammaproteobacteria
Pantoea rodasii ND03 [JTJJ]
1
75
+
Arg
CCT
[ENA]
¡û
>W1511547665
JZRD01000001
Gammaproteobacteria
Pantoea sp. SM3 [JZRD]
229732
229806
+
Arg
CCT
[ENA]
¡û
>W1511547905
JZRH01000001
Gammaproteobacteria
Pantoea sp. BL1 [JZRH]
96932
97006
+
Arg
CCT
[ENA]
¡û
>W1511699749
LGIS01000030
Gammaproteobacteria
Pantoea sp. RIT-PI-b [LGIS]
145438
145512
+
Arg
CCT
[ENA]
¡û
>W11187494
CAEJ01000007
Gammaproteobacteria
Pantoea ananatis [CAEJ]
112070
112144
+
Arg
CCT
[ENA]
¡û
>C121016301
FP236843
Gammaproteobacteria
Erwinia billingiae Eb661 [FP236843]
3531334
3531408
+
Arg
CCT
[Ensembl]
¡û
>C161035411
CP011427
Gammaproteobacteria
Pantoea vagans ND02 [CP011427]
1063470
1063396
-
Arg
CCT
[Ensembl]
¡û
>C161107988
LN907827
Gammaproteobacteria
Duffyella gerundensis [LN907827]
2743816
2743890
+
Arg
CCT
[Ensembl]
¡û
>W1610575824
LAGS01000032
Gammaproteobacteria
bacteria symbiont BFo2 of Frankliniella occidentalis [LAGS]
517
591
+
Arg
CCT
[ENA]
¡û
>W1610591163
LDRZ01000009
Gammaproteobacteria
Pantoea dispersa [LDRZ]
305997
305923
-
Arg
CCT
[ENA]
¡û
>W1610591394
LDSD01000001
Gammaproteobacteria
Pantoea dispersa [LDSD]
15712
15638
-
Arg
CCT
[ENA]
¡û
>W1610591749
LDSI01000010
Gammaproteobacteria
Pantoea stewartii [LDSI]
113248
113322
+
Arg
CCT
[ENA]
¡û
>W1610630802
LIIU01000009
Gammaproteobacteria
Pantoea stewartii [LIIU]
227607
227533
-
Arg
CCT
[ENA]
¡û
>W1610889654
LRPS01000054
Gammaproteobacteria
Citrobacter koseri [LRPS]
8612
8686
+
Arg
CCT
[ENA]
¡û
>W1610889685
LRPT01000007
Gammaproteobacteria
Citrobacter koseri [LRPT]
71235
71309
+
Arg
CCT
[ENA]
¡û
>W1611061911
MAYN01000008
Gammaproteobacteria
Pantoea eucrina [MAYN]
548334
548260
-
Arg
CCT
[ENA]
¡û
>W1730033563
MPYG03000117
Gammaproteobacteria
Klebsiella pneumoniae [MPYG]
10213
10139
-
Arg
CCT
[ENA]
¡û
>W1710049488
BBOB01000003
Gammaproteobacteria
Type-C symbiont of Plautia stali [BBOB]
35751
35677
-
Arg
CCT
[ENA]
¡û
>W1710049560
BBOC01000006
Gammaproteobacteria
Type-D symbiont of Plautia stali [BBOC]
69042
69116
+
Arg
CCT
[ENA]
¡û
>W1710049622
BBOD01000001
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
31832
31906
+
Arg
CCT
[ENA]
¡û
>W1710578706
FPBU01000004
Gammaproteobacteria
Pantoea sp. YR525 [FPBU]
240887
240813
-
Arg
CCT
[ENA]
¡û
>W1710694088
LAGS01000032
Gammaproteobacteria
bacteria symbiont BFo2 of Frankliniella occidentalis [LAGS]
517
591
+
Arg
CCT
[ENA]
¡û
>W1710710443
LDRZ01000009
Gammaproteobacteria
Pantoea dispersa [LDRZ]
305997
305923
-
Arg
CCT
[ENA]
¡û
>W1710710674
LDSD01000001
Gammaproteobacteria
Pantoea dispersa [LDSD]
15712
15638
-
Arg
CCT
[ENA]
¡û
>W1710711029
LDSI01000010
Gammaproteobacteria
Pantoea stewartii [LDSI]
113248
113322
+
Arg
CCT
[ENA]
¡û
>W1710762141
LIIU01000009
Gammaproteobacteria
Pantoea stewartii [LIIU]
227607
227533
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK