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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
81 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1014367
SRR023845.107123
237574
Alphaproteobacteria
TGT
Thr
>SRA1014393
SRR023845.118644
412181
Alphaproteobacteria
CTG
Gln
>SRA1014447
SRR023845.146041
23620
Alphaproteobacteria
GCT
Ser
>SRA1014455
SRR023845.147632
162524
Alphaproteobacteria
ACG
Arg
>SRA1014481
SRR023845.158337
237574
Alphaproteobacteria
TGT
Thr
>SRA1014140
SRR023845.15966
412181
Alphaproteobacteria
CTG
Gln
>SRA1014141
SRR023845.16132
144964
Alphaproteobacteria
TGG
Pro
>SRA1014548
SRR023845.193770
417264
Alphaproteobacteria
CTG
Gln
>SRA1014615
SRR023845.228543
236134
Alphaproteobacteria
TAC
Val
>SRA1014644
SRR023845.239045
236134
Alphaproteobacteria
TAC
Val
>SRA1014674
SRR023845.256104
237574
Alphaproteobacteria
TGT
Thr
>SRA1014679
SRR023845.259184
412181
Alphaproteobacteria
CTG
Gln
>SRA1014708
SRR023845.274457
162524
Alphaproteobacteria
ACG
Arg
>SRA1014709
SRR023845.274457
162524
Alphaproteobacteria
ACG
Arg
>SRA1014717
SRR023845.278298
417658
Alphaproteobacteria
TCC
Gly
>SRA1014736
SRR023845.288735
144971
Alphaproteobacteria
TCT
Arg
>SRA1014180
SRR023845.30025
162524
Alphaproteobacteria
ACG
Arg
>SRA1014756
SRR023845.300594
237574
Alphaproteobacteria
TGT
Thr
>SRA1014759
SRR023845.301707
339360
Alphaproteobacteria
>SRA1014761
SRR023845.301851
237574
Alphaproteobacteria
TGT
Thr
>SRA1014763
SRR023845.303422
412181
Alphaproteobacteria
CTG
Gln
>SRA1014767
SRR023845.304332
237574
Alphaproteobacteria
TGT
Thr
>SRA1014790
SRR023845.316249
417658
Alphaproteobacteria
TCC
Gly
>SRA1014791
SRR023845.316637
239095
Alphaproteobacteria
TGT
Thr
>SRA1014793
SRR023845.317203
412181
Alphaproteobacteria
CTG
Gln
>SRA1014795
SRR023845.317725
243803
Alphaproteobacteria
CAT
Met
>SRA1014798
SRR023845.319092
162524
Alphaproteobacteria
ACG
Arg
>SRA1014806
SRR023845.321104
162524
Alphaproteobacteria
ACG
Arg
>SRA1014813
SRR023845.323117
412181
Alphaproteobacteria
CTG
Gln
>SRA1014816
SRR023845.325393
237574
Alphaproteobacteria
TGT
Thr
>SRA1014826
SRR023845.331886
183034
Alphaproteobacteria
CCA
Trp
>SRA1014833
SRR023845.334835
338622
Alphaproteobacteria
GTT
Asn
>SRA1014191
SRR023845.33627
412181
Alphaproteobacteria
CTG
Gln
>SRA1014835
SRR023845.337195
23573
Alphaproteobacteria
GCT
Ser
>SRA1014849
SRR023845.343118
162524
Alphaproteobacteria
ACG
Arg
>SRA1014872
SRR023845.355022
338289
Alphaproteobacteria
GAC
Val
>SRA1014197
SRR023845.35526
339454
Alphaproteobacteria
>SRA1014896
SRR023845.368548
412181
Alphaproteobacteria
CTG
Gln
>SRA1014110
SRR023845.3799
339514
Alphaproteobacteria
GGT
Thr
>SRA1014204
SRR023845.38072
239295
Alphaproteobacteria
CAT
Met
>SRA1014938
SRR023845.390602
412181
Alphaproteobacteria
CTG
Gln
>SRA1014939
SRR023845.390992
162524
Alphaproteobacteria
ACG
Arg
>SRA1014940
SRR023845.391127
23573
Alphaproteobacteria
GCT
Ser
>SRA1014966
SRR023845.400879
146965
Alphaproteobacteria
CGG
Pro
>SRA1014111
SRR023845.4021
417658
Alphaproteobacteria
TCC
Gly
>SRA1014991
SRR023845.414397
412181
Alphaproteobacteria
CTG
Gln
>SRA1015003
SRR023845.420264
236134
Alphaproteobacteria
TAC
Val
>SRA1015013
SRR023845.423620
162524
Alphaproteobacteria
ACG
Arg
>SRA1015016
SRR023845.423919
237574
Alphaproteobacteria
TGT
Thr
>SRA1015032
SRR023845.426310
162524
Alphaproteobacteria
ACG
Arg
>SRA1015033
SRR023845.427639
237574
Alphaproteobacteria
TGT
Thr
>SRA1015043
SRR023845.433965
162524
Alphaproteobacteria
ACG
Arg
>SRA1015048
SRR023845.435741
23627
Alphaproteobacteria
GGA
Ser
>SRA1015050
SRR023845.436617
236134
Alphaproteobacteria
TAC
Val
>SRA1015056
SRR023845.442168
237574
Alphaproteobacteria
TGT
Thr
>SRA1015067
SRR023845.446579
417658
Alphaproteobacteria
TCC
Gly
>SRA1015092
SRR023845.457281
144972
Alphaproteobacteria
>SRA1015103
SRR023845.461883
7609
Alphaproteobacteria
GCT
Ser
>SRA1015107
SRR023845.463803
162524
Alphaproteobacteria
ACG
Arg
>SRA1015108
SRR023845.463803
162524
Alphaproteobacteria
ACG
Arg
>SRA1015112
SRR023845.464400
162524
Alphaproteobacteria
ACG
Arg
>SRA1015133
SRR023845.471606
237574
Alphaproteobacteria
TGT
Thr
>SRA1015152
SRR023845.478538
255832
Alphaproteobacteria
CGC
Ala
>SRA1014113
SRR023845.4838
349303
Alphaproteobacteria
GCC
Gly
>SRA1015170
SRR023845.486421
339514
Alphaproteobacteria
GGT
Thr
>SRA1015173
SRR023845.487744
341164
Alphaproteobacteria
GCC
Gly
>SRA1014235
SRR023845.48901
350547
Alphaproteobacteria
GCC
Gly
>SRA1015213
SRR023845.500631
146852
Alphaproteobacteria
GTC
Asp
>SRA1014239
SRR023845.50393
338622
Alphaproteobacteria
GTT
Asn
>SRA1015244
SRR023845.517270
339516
Alphaproteobacteria
CAC
Val
>SRA1015247
SRR023845.519248
162524
Alphaproteobacteria
ACG
Arg
>SRA1014242
SRR023845.51933
412181
Alphaproteobacteria
CTG
Gln
>SRA1015272
SRR023845.533892
255832
Alphaproteobacteria
CGC
Ala
>SRA1014268
SRR023845.66785
7030
Alphaproteobacteria
GCT
Ser
>SRA1014272
SRR023845.66897
417658
Alphaproteobacteria
TCC
Gly
>SRA1014306
SRR023845.83324
162524
Alphaproteobacteria
ACG
Arg
>SRA1014311
SRR023845.85090
243633
Alphaproteobacteria
CGT
Thr
>SRA1014316
SRR023845.86860
162524
Alphaproteobacteria
ACG
Arg
>SRA1014324
SRR023845.89083
159426
Alphaproteobacteria
CAT
Met
>SRA1014336
SRR023845.94116
238733
Alphaproteobacteria
CCA
Trp
>SRA1014337
SRR023845.94447
247477
Alphaproteobacteria
GTT
Asn
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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