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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
HIT:
94 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>SRA1006197
SRR016610.226092
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
89
165
+
Arg
ACG
[SRA]
>SRA1006146
SRR016610.72389
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
147
223
+
Arg
ACG
[SRA]
>SRA1006133
SRR016610.31196
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
166
250
+
Leu
CAG
[SRA]
>SRA1006213
SRR016610.294728
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
102
27
-
Met
CAT
[SRA]
>SRA1006219
SRR016610.313319
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
138
62
-
Met
CAT
[SRA]
>SRA1006211
SRR016610.267604
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
138
62
-
Pro
CGG
[SRA]
>SRA1006206
SRR016610.254543
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
118
45
-
Gln
CTG
[SRA]
>SRA1006155
SRR016610.106656
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
137
213
+
Lys
CTT
[SRA]
>SRA1006169
SRR016610.131599
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
35
111
+
Lys
CTT
[SRA]
>SRA1006141
SRR016610.51063
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
177
252
+
Lys
CTT
[SRA]
>SRA1006198
SRR016610.228241
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
215
139
-
Ile
GAT
[SRA]
>SRA1006145
SRR016610.68054
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
142
68
-
Cys
GCA
[SRA]
>SRA1006183
SRR016610.164557
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
54
129
+
Gly
GCC
[SRA]
>SRA1006144
SRR016610.56209
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
84
157
+
Gly
GCC
[SRA]
>SRA1006195
SRR016610.223861
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
183
99
-
Pro
GGG
[SRA]
>SRA1006214
SRR016610.298843
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
104
19
-
Tyr
GTA
[SRA]
>SRA1006216
SRR016610.300480
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
104
19
-
Tyr
GTA
[SRA]
>SRA1006152
SRR016610.102071
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
92
168
+
His
GTG
[SRA]
>SRA1006160
SRR016610.116630
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
82
6
-
His
GTG
[SRA]
>SRA1006161
SRR016610.119357
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
8
84
+
His
GTG
[SRA]
>SRA1006165
SRR016610.124599
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
8
84
+
His
GTG
[SRA]
>SRA1006168
SRR016610.130623
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
18
94
+
His
GTG
[SRA]
>SRA1006130
SRR016610.13362
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
192
116
-
His
GTG
[SRA]
>SRA1006175
SRR016610.141537
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
92
168
+
His
GTG
[SRA]
>SRA1006176
SRR016610.148006
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
239
163
-
His
GTG
[SRA]
>SRA1006180
SRR016610.156072
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
29
105
+
His
GTG
[SRA]
>SRA1006181
SRR016610.161373
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
29
105
+
His
GTG
[SRA]
>SRA1006185
SRR016610.170709
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
190
114
-
His
GTG
[SRA]
>SRA1006186
SRR016610.178992
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
121
45
-
His
GTG
[SRA]
>SRA1006188
SRR016610.190884
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
128
52
-
His
GTG
[SRA]
>SRA1006189
SRR016610.194802
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
84
8
-
His
GTG
[SRA]
>SRA1006190
SRR016610.202763
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
106
30
-
His
GTG
[SRA]
>SRA1006191
SRR016610.203046
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
166
90
-
His
GTG
[SRA]
>SRA1006193
SRR016610.209708
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
106
30
-
His
GTG
[SRA]
>SRA1006194
SRR016610.214801
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
106
30
-
His
GTG
[SRA]
>SRA1006199
SRR016610.234522
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
82
158
+
His
GTG
[SRA]
>SRA1006201
SRR016610.239301
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
7
83
+
His
GTG
[SRA]
>SRA1006202
SRR016610.242712
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
75
151
+
His
GTG
[SRA]
>SRA1006131
SRR016610.24521
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
28
104
+
His
GTG
[SRA]
>SRA1006132
SRR016610.27390
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
61
137
+
His
GTG
[SRA]
>SRA1006217
SRR016610.305643
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
23
99
+
His
GTG
[SRA]
>SRA1006218
SRR016610.306977
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
115
191
+
His
GTG
[SRA]
>SRA1006221
SRR016610.319444
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
106
30
-
His
GTG
[SRA]
>SRA1006223
SRR016610.322518
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
74
150
+
His
GTG
[SRA]
>SRA1006134
SRR016610.36786
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
52
128
+
His
GTG
[SRA]
>SRA1006139
SRR016610.50662
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
121
45
-
His
GTG
[SRA]
>SRA1006140
SRR016610.51063
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
21
97
+
His
GTG
[SRA]
>SRA1006142
SRR016610.51350
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
18
94
+
His
GTG
[SRA]
>SRA1006150
SRR016610.91357
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
8
84
+
His
GTG
[SRA]
>SRA1006220
SRR016610.315834
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
81
154
+
Asn
GTT
[SRA]
>SRA1006153
SRR016610.102536
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
3
87
+
Leu
TAG
[SRA]
>SRA1006156
SRR016610.109187
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
3
87
+
Leu
TAG
[SRA]
>SRA1006157
SRR016610.112354
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
91
175
+
Leu
TAG
[SRA]
>SRA1006158
SRR016610.113660
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
97
12
-
Leu
TAG
[SRA]
>SRA1006164
SRR016610.124158
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
96
12
-
Leu
TAG
[SRA]
>SRA1006166
SRR016610.126301
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
3
87
+
Leu
TAG
[SRA]
>SRA1006167
SRR016610.126440
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
96
12
-
Leu
TAG
[SRA]
>SRA1006170
SRR016610.133591
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
127
211
+
Leu
TAG
[SRA]
>SRA1006171
SRR016610.134333
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
142
58
-
Leu
TAG
[SRA]
>SRA1006172
SRR016610.138334
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
141
58
-
Leu
TAG
[SRA]
>SRA1006173
SRR016610.139159
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
214
130
-
Leu
TAG
[SRA]
>SRA1006174
SRR016610.141186
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
127
211
+
Leu
TAG
[SRA]
>SRA1006177
SRR016610.152486
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
96
12
-
Leu
TAG
[SRA]
>SRA1006178
SRR016610.155880
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
97
12
-
Leu
TAG
[SRA]
>SRA1006182
SRR016610.162182
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
128
212
+
Leu
TAG
[SRA]
>SRA1006187
SRR016610.185387
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
15
99
+
Leu
TAG
[SRA]
>SRA1006192
SRR016610.206614
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
42
126
+
Leu
TAG
[SRA]
>SRA1006200
SRR016610.234937
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
106
22
-
Leu
TAG
[SRA]
>SRA1006203
SRR016610.250605
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
42
126
+
Leu
TAG
[SRA]
>SRA1006210
SRR016610.262775
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
7
91
+
Leu
TAG
[SRA]
>SRA1006212
SRR016610.272988
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
7
91
+
Leu
TAG
[SRA]
>SRA1006215
SRR016610.299643
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
7
91
+
Leu
TAG
[SRA]
>SRA1006222
SRR016610.322430
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
120
37
-
Leu
TAG
[SRA]
>SRA1006135
SRR016610.36933
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
2
86
+
Leu
TAG
[SRA]
>SRA1006137
SRR016610.41032
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
187
102
-
Leu
TAG
[SRA]
>SRA1006138
SRR016610.44136
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
141
57
-
Leu
TAG
[SRA]
>SRA1006143
SRR016610.51862
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
107
23
-
Leu
TAG
[SRA]
>SRA1006147
SRR016610.74871
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
96
12
-
Leu
TAG
[SRA]
>SRA1006149
SRR016610.80669
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
92
175
+
Leu
TAG
[SRA]
>SRA1006151
SRR016610.95390
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
97
12
-
Leu
TAG
[SRA]
>SRA1006205
SRR016610.252388
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
109
38
-
Gly
TCC
[SRA]
>SRA1006209
SRR016610.259325
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
109
38
-
Gly
TCC
[SRA]
>SRA1006207
SRR016610.256497
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
5
79
+
Arg
TCT
[SRA]
>SRA1006154
SRR016610.104274
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
92
16
-
Ala
TGC
[SRA]
>SRA1006159
SRR016610.116372
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
104
178
+
Ala
TGC
[SRA]
>SRA1006204
SRR016610.252388
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
189
114
-
Pro
TGG
[SRA]
>SRA1006208
SRR016610.259325
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
189
114
-
Pro
TGG
[SRA]
>SRA1006162
SRR016610.119981
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
93
168
+
Thr
TGT
[SRA]
>SRA1006163
SRR016610.121259
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
94
169
+
Thr
TGT
[SRA]
>SRA1006179
SRR016610.156012
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
97
22
-
Thr
TGT
[SRA]
>SRA1006184
SRR016610.165264
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
42
118
+
Gln
TTG
[SRA]
>SRA1006196
SRR016610.224162
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
85
10
-
Lys
TTT
[SRA]
>SRA1006136
SRR016610.39283
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
178
103
-
Lys
TTT
[SRA]
>SRA1006148
SRR016610.78651
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
178
103
-
Lys
TTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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