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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45267 (77 seq.)
>A171000401
CP001338
Euryarchaeota
Methanosphaerula palustris E1-9c [CP001338]
2530742
2530657
-
Ser
GCT
-
¡û
>A171002822
CP003167
Euryarchaeota
Methanoregula formicica SMSP [CP003167]
485333
485418
+
Ser
GCT
-
¡û
>A171007211
HE964772
Euryarchaeota
Methanoculleus bourgensis MS2 MS2T [HE964772]
596733
596648
-
Ser
GCT
-
¡û
>A171007567
LT158599
Euryarchaeota
Methanoculleus bourgensis [LT158599]
611540
611455
-
Ser
GCT
-
¡û
>A171007636
LT549891
Euryarchaeota
Methanoculleus bourgensis [LT549891]
838745
838660
-
Ser
GCT
-
¡û
>WENV180353993
OBLQ011266886
[OBLQ] soil metagenome; soil
99
184
+
Ser
GCT
[ENA]
¢þ
>WENV180584173
OCOJ01015654
[OCOJ] soil metagenome; soil
76
161
+
Ser
GCT
[ENA]
¢þ
>WENV181230048
OFEK01000225
[OFEK] activated sludge metagenome; Anaerobic digester
7608
7693
+
Ser
GCT
[ENA]
¢þ
>WENV181230373
OFEK01000744
[OFEK] activated sludge metagenome; Anaerobic digester
25133
25218
+
Ser
GCT
[ENA]
¢þ
>WENV181359221
OFMW01000412
[OFMW] sediment metagenome; Lake sediment
48
133
+
Ser
GCT
[ENA]
¢þ
>WENV181360962
OFNE01000833
[OFNE] sediment metagenome; Lake sediment
206
291
+
Ser
GCT
[ENA]
¢þ
>WENV181361012
OFNF01000454
[OFNF] sediment metagenome; Lake sediment
79
164
+
Ser
GCT
[ENA]
¢þ
>WENV181361185
OFNL01000196
[OFNL] sediment metagenome; Lake sediment
32
117
+
Ser
GCT
[ENA]
¢þ
>WENV181361273
OFNM01001821
[OFNM] sediment metagenome; Lake sediment
575
490
-
Ser
GCT
[ENA]
¢þ
>WENV181361476
OFNY01001869
[OFNY] sediment metagenome; Lake sediment
131
216
+
Ser
GCT
[ENA]
¢þ
>WENV181361491
OFNZ01000109
[OFNZ] sediment metagenome; Lake sediment
779
694
-
Ser
GCT
[ENA]
¢þ
>WENV181361749
OFOH01000657
[OFOH] sediment metagenome; Lake sediment
423
338
-
Ser
GCT
[ENA]
¢þ
>WENV181361777
OFOI01000417
[OFOI] sediment metagenome; Lake sediment
757
672
-
Ser
GCT
[ENA]
¢þ
>WENV181363166
OFOT01000597
[OFOT] sediment metagenome; Lake sediment
390
475
+
Ser
GCT
[ENA]
¢þ
>WENV183512900
OMKS01001744
[OMKS] sediment metagenome; hot spring sediment
13817
13732
-
Ser
GCT
[ENA]
¢þ
>WENV183701667
PDVH01000144
[PDVH] alkali sediment metagenome; glacial lake sediment
3225
3140
-
Ser
GCT
[ENA]
¢þ
>WENV183701763
PDVH01000972
[PDVH] alkali sediment metagenome; glacial lake sediment
4063
4148
+
Ser
GCT
[ENA]
¢þ
>WENV183702075
PDVH01011619
[PDVH] alkali sediment metagenome; glacial lake sediment
229
314
+
Ser
GCT
[ENA]
¢þ
>WENV183702904
PDVJ01000675
[PDVJ] alkali sediment metagenome; glacial lake sediment
6297
6382
+
Ser
GCT
[ENA]
¢þ
>WENV183703314
PDVJ01009041
[PDVJ] alkali sediment metagenome; glacial lake sediment
65
150
+
Ser
GCT
[ENA]
¢þ
>WENV183703333
PDVJ01009874
[PDVJ] alkali sediment metagenome; glacial lake sediment
2064
1979
-
Ser
GCT
[ENA]
¢þ
>WENV183703815
PDVJ01050219
[PDVJ] alkali sediment metagenome; glacial lake sediment
239
154
-
Ser
GCT
[ENA]
¢þ
>At0698
CP000780
Euryarchaeota
Methanoregula boonei 6A8 [CP000780]
2296584
2296500
-
Ser
GCT
[Ensembl]
¡û
>At1261
CP000562
Euryarchaeota
Methanoculleus marisnigri JR1 [CP000562]
1792799
1792883
+
Ser
GCT
[Ensembl]
¡û
>WENV170561824
CZCB01000166
[CZCB] anaerobic digester metagenome; anaerobic digester
14038
13953
-
Ser
GCT
[ENA]
¢þ
>WENV170562179
CZCB01001303
[CZCB] anaerobic digester metagenome; anaerobic digester
13070
13155
+
Ser
GCT
[ENA]
¢þ
>WENV170668588
LAHQ01002477
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
1820
1735
-
Ser
GCT
[ENA]
¢þ
>WENV170668820
LAHQ01057109
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
408
323
-
Ser
GCT
[ENA]
¢þ
>WENV170669068
LAHR01005769
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
71
156
+
Ser
GCT
[ENA]
¢þ
>WENV170670343
LAHT01002836
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
1156
1071
-
Ser
GCT
[ENA]
¢þ
>WENV170670375
LAHT01004637
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
16909
16994
+
Ser
GCT
[ENA]
¢þ
>WENV170670739
LAHU01000138
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
24142
24057
-
Ser
GCT
[ENA]
¢þ
>WENV170670841
LAHU01002264
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
25181
25094
-
Ser
GCT
[ENA]
¢þ
>WENV170671131
LAHU01017321
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
1788
1703
-
Ser
GCT
[ENA]
¢þ
>WENV170671519
LAHU01071802
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
814
729
-
Ser
GCT
[ENA]
¢þ
>WENV170677571
LDZT01007021
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1556
1471
-
Ser
GCT
[ENA]
¢þ
>WENV170678109
LDZT01011153
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1120
1205
+
Ser
GCT
[ENA]
¢þ
>WENV170678670
LDZU01003608
[LDZU] terrestrial metagenome; oil reservoir sample SB2
8433
8348
-
Ser
GCT
[ENA]
¢þ
>WENV170678713
LDZU01004011
[LDZU] terrestrial metagenome; oil reservoir sample SB2
913
998
+
Ser
GCT
[ENA]
¢þ
>WENV170678763
LDZU01004231
[LDZU] terrestrial metagenome; oil reservoir sample SB2
5473
5388
-
Ser
GCT
[ENA]
¢þ
>WENV170685208
LFRM01078413
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2083
2168
+
Ser
GCT
[ENA]
¢þ
>WENV170689519
LFRM01298634
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
28488
28573
+
Ser
GCT
[ENA]
¢þ
>WENV170715280
LNQE01001264
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
13760
13675
-
Ser
GCT
[ENA]
¢þ
>WENV170715339
LNQE01001586
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
1707
1622
-
Ser
GCT
[ENA]
¢þ
>WENV170715953
LQYC01000011
[LQYC] bioreactor metagenome; benzene-degrading methanogenic enrichment culture from a contaminated aquifer at an oil
7163
7078
-
Ser
GCT
[ENA]
¢þ
>WENV170717948
LSQX01055462
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5236
5321
+
Ser
GCT
[ENA]
¢þ
>WENV170722238
LSQX01222309
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1668
1583
-
Ser
GCT
[ENA]
¢þ
>WENV170727127
LSQX01405805
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2146
2231
+
Ser
GCT
[ENA]
¢þ
>WENV170971248
MTKX01002922
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
311
396
+
Ser
GCT
[ENA]
¢þ
>WENV170978871
MTKZ01064984
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
207
122
-
Ser
GCT
[ENA]
¢þ
>W1910211660
FMID01000003
Euryarchaeota
Methanoculleus chikugoensis [FMID]
24833
24918
+
Ser
GCT
[ENA]
¡û
>W1910226983
FNFT01000012
Euryarchaeota
Methanoculleus thermophilus DSM 2373 [FNFT]
26063
25978
-
Ser
GCT
[ENA]
¡û
>W1910572520
JMIO01000037
Euryarchaeota
Methanoculleus sp. MH98A [JMIO]
48227
48312
+
Ser
GCT
[ENA]
¡û
>W1910583808
JXOJ01000002
Euryarchaeota
Methanoculleus sediminis S3Fa [JXOJ]
118826
118911
+
Ser
GCT
[ENA]
¡û
>W1910617185
LHQS01000004
Euryarchaeota
Methanoculleus taiwanensis CYW4 [LHQS]
142264
142349
+
Ser
GCT
[ENA]
¡û
>W1910783530
MPOY01000258
Euryarchaeota
Methanoculleus sp. EBM-46 [MPOY]
12385
12470
+
Ser
GCT
[ENA]
¡û
>W1911581341
PGCL01000007
Euryarchaeota
Methanofollis fontis FWC-SCC2 [PGCL]
21451
21366
-
Ser
GCT
[ENA]
¡û
>ENV09001119
ABSQ01034865
Freshwater sediment metagenome lwMethenol_C1
273
360
+
Ser
GCT
[ENA]
¡û
>W1610000237
AASI01000001
Euryarchaeota
Methanoculleus marisnigri JR1 [AASI]
173225
173310
+
Ser
GCT
[ENA]
¡û
>W1610000999
ABZB01000002
Euryarchaeota
Methanosphaerula palustris palustris E1-9c [ABZB]
447434
447347
-
Ser
GCT
[ENA]
¡û
>W1610003478
AGCO01000002
Euryarchaeota
Methanofollis liminatans DSM 4140 [AGCO]
16048
15963
-
Ser
GCT
[ENA]
¡û
>W1610062975
BCNW01000001
Euryarchaeota
Methanofollis ethanolicus HASU [BCNW]
2594158
2594243
+
Ser
GCT
[ENA]
¡û
>W1610063037
BCNX01000009
Euryarchaeota
Methanoculleus thermophilus CR-1 [BCNX]
103492
103577
+
Ser
GCT
[ENA]
¡û
>W1610063051
BCNY01000004
Euryarchaeota
Methanoculleus horonobensis T10 [BCNY]
21623
21538
-
Ser
GCT
[ENA]
¡û
>W1610605005
LFRN01000052
Euryarchaeota
Candidatus Methanoculleus thermohydrogenotrophicum DTU006 [LFRN]
2083
2168
+
Ser
GCT
[ENA]
¡û
>W1610605069
LFRO01000077
Euryarchaeota
Methanoculleus sp. DTU007 [LFRO]
28488
28573
+
Ser
GCT
[ENA]
¡û
>W1610613674
LGGD01000047
Euryarchaeota
Methanoculleus marisnigri [LGGD]
1120
1205
+
Ser
GCT
[ENA]
¡û
>W1610613813
LGGJ01000059
Euryarchaeota
Methanocalculus sp. 52_23 [LGGJ]
1556
1471
-
Ser
GCT
[ENA]
¡û
>W1610614407
LGHE01000016
Euryarchaeota
Methanoculleus marisnigri [LGHE]
8433
8348
-
Ser
GCT
[ENA]
¡û
>W1610614469
LGHF01000029
Euryarchaeota
Methanomicrobiales archaeon 53_19 [LGHF]
5473
5388
-
Ser
GCT
[ENA]
¡û
>W1610685966
LKUD01000087
Euryarchaeota
Methanoculleus sp. SDB [LKUD]
87
2
-
Ser
GCT
[ENA]
¡û
>W1610946083
LUYK01000224
Euryarchaeota
Methanomicrobiales archaeon Methan_07 [LUYK]
359
444
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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