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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001809)
Anticodon = GCT
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.2703 (6 seq.)
>WENV170625690
FUWD013203496
[FUWD] metagenome; unknown
589
683
+
Ser
GCT
[ENA]
¢þ
>WENV170633912
FUWD013405504
[FUWD] metagenome; unknown
589
683
+
Ser
GCT
[ENA]
¢þ
>SRA1030022
SRR035087.217440
454 Sequencing (SRP001808)
78
172
+
Ser
GCT
[SRA]
>SRA1030095
SRR035087.227049
454 Sequencing (SRP001808)
194
100
-
Ser
GCT
[SRA]
>SRA1033394
SRR035088.244413
454 Sequencing (SRP001809)
17
111
+
Ser
GCT
[SRA]
>SRA1034125
SRR035088.498793
454 Sequencing (SRP001809)
16
110
+
Ser
GCT
[SRA]
Identical group No.3200 (9 seq.)
>WENV170612673
FUWD012655651
[FUWD] metagenome; unknown
322
416
+
Ser
GCT
[ENA]
¢þ
>WENV170620938
FUWD013043900
[FUWD] metagenome; unknown
2831
2736
-
Ser
GCT
[ENA]
¢þ
>WENV170629096
FUWD013260871
[FUWD] metagenome; unknown
2831
2736
-
Ser
GCT
[ENA]
¢þ
>SRA1032818
SRR035088.108338
454 Sequencing (SRP001809)
21
116
+
Ser
GCT
[SRA]
>SRA1033563
SRR035088.289739
454 Sequencing (SRP001809)
17
112
+
Ser
GCT
[SRA]
>SRA1033753
SRR035088.346198
454 Sequencing (SRP001809)
106
11
-
Ser
GCT
[SRA]
>SRA1034081
SRR035088.477773
454 Sequencing (SRP001809)
17
112
+
Ser
GCT
[SRA]
>SRA1040731
SRR035091.138811
454 Sequencing (SRP001812)
372
467
+
Ser
GCT
[SRA]
>SRA1044773
SRR035092.340381
454 Sequencing (SRP001813)
323
417
+
Ser
GCT
[SRA]
Identical group No.5712 (3 seq.)
>SRA1025728
SRR035085.71766
454 Sequencing (SRP001806)
433
340
-
Ser
GCT
[SRA]
>SRA1033307
SRR035088.221490
454 Sequencing (SRP001809)
187
94
-
Ser
GCT
[SRA]
>SRA1035956
SRR035089.412710
454 Sequencing (SRP001810)
521
428
-
Ser
GCT
[SRA]
Identical group No.5730 (11 seq.)
>W131193794
ASPC01000002
Atribacterota
Atribacteria bacterium SCGC AAA255-N14 OP9 bacterium SCGC AAA255-N14 [ASPC]
18682
18589
-
Ser
GCT
[ENA]
¡û
>W1711398145
MEYG01000038
Atribacterota
Candidatus Atribacteria bacterium RBG_16_35_8 [MEYG]
17391
17484
+
Ser
GCT
[ENA]
¡û
>WENV183513745
OMKS01007564
[OMKS] sediment metagenome; hot spring sediment
2150
2243
+
Ser
GCT
[ENA]
¢þ
>WENV170017963
BARV01001435
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
1277
1370
+
Ser
GCT
[ENA]
¢þ
>WENV170018169
BARV01021379
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
419
512
+
Ser
GCT
[ENA]
¢þ
>WENV170620838
FUWD013041018
[FUWD] metagenome; unknown
1511
1418
-
Ser
GCT
[ENA]
¢þ
>WENV170628989
FUWD013258109
[FUWD] metagenome; unknown
1511
1418
-
Ser
GCT
[ENA]
¢þ
>SRA1030572
SRR035087.297375
454 Sequencing (SRP001808)
288
195
-
Ser
GCT
[SRA]
>SRA1034097
SRR035088.485169
454 Sequencing (SRP001809)
116
23
-
Ser
GCT
[SRA]
>SRA1036619
SRR035089.565424
454 Sequencing (SRP001810)
262
169
-
Ser
GCT
[SRA]
>W1510076792
CDPM01000229
Atribacterota
Atribacteria bacterium JGI 0000014-F07 [CDPM]
4811
4904
+
Ser
GCT
[ENA]
¡û
Identical group No.7940 (1 seq.)
>SRA1032691
SRR035088.80046
454 Sequencing (SRP001809)
307
214
-
Ser
GCT
[SRA]
Identical group No.8553 (19 seq.)
>W131157564
AQSK01000206
Unclassified
Cloacimonetes bacterium SCGC AAA252-E13 KSB1 bacterium SCGC AAA252-E13 [AQSK]
33931
34023
+
Ser
GCT
[ENA]
¡û
>W131157629
AQSM01000150
Unclassified
Cloacimonetes bacterium SCGC AAA252-N14 KSB1 bacterium SCGC AAA252-N14 [AQSM]
368
276
-
Ser
GCT
[ENA]
¡û
>W131192172
ASKQ01000029
Unclassified
Cloacimonetes bacterium SCGC AAA252-O17 KSB1 bacterium SCGC AAA252-O17 [ASKQ]
286
194
-
Ser
GCT
[ENA]
¡û
>W131192940
ASNH01000025
Unclassified
Cloacimonetes bacterium SCGC AAA255-C20 KSB1 bacterium SCGC AAA255-C20 [ASNH]
6953
7045
+
Ser
GCT
[ENA]
¡û
>W131192985
ASNI01000022
Unclassified
Cloacimonetes bacterium SCGC AAA252-N17 KSB1 bacterium SCGC AAA252-N17 [ASNI]
8677
8585
-
Ser
GCT
[ENA]
¡û
>W131193059
ASNM01000043
Unclassified
Cloacimonetes bacterium SCGC AAA252-G08 KSB1 bacterium SCGC AAA252-G08 [ASNM]
13323
13415
+
Ser
GCT
[ENA]
¡û
>W131193141
ASNQ01000022
Unclassified
Cloacimonetes bacterium SCGC AAA252-K16 KSB1 bacterium SCGC AAA252-K16 [ASNQ]
9325
9233
-
Ser
GCT
[ENA]
¡û
>W131193198
ASNT01000035
Unclassified
Cloacimonetes bacterium SCGC AAA252-P10 KSB1 bacterium SCGC AAA252-P10 [ASNT]
16968
17060
+
Ser
GCT
[ENA]
¡û
>W141139674
AWNX01000008
Unclassified
Cloacimonetes bacterium JGI OTU-1 [AWNX]
4630
4538
-
Ser
GCT
[ENA]
¡û
>WENV170625243
FUWD013193950
[FUWD] metagenome; unknown
4981
4889
-
Ser
GCT
[ENA]
¢þ
>WENV170633488
FUWD013396907
[FUWD] metagenome; unknown
4981
4889
-
Ser
GCT
[ENA]
¢þ
>SRA1025630
SRR035085.53463
454 Sequencing (SRP001806)
135
227
+
Ser
GCT
[SRA]
>SRA1026168
SRR035085.157123
454 Sequencing (SRP001806)
300
392
+
Ser
GCT
[SRA]
>SRA1026621
SRR035085.243480
454 Sequencing (SRP001806)
302
394
+
Ser
GCT
[SRA]
>SRA1030332
SRR035087.264545
454 Sequencing (SRP001808)
242
150
-
Ser
GCT
[SRA]
>SRA1031463
SRR035087.433744
454 Sequencing (SRP001808)
197
105
-
Ser
GCT
[SRA]
>SRA1032099
SRR035087.552143
454 Sequencing (SRP001808)
287
379
+
Ser
GCT
[SRA]
>SRA1033582
SRR035088.293464
454 Sequencing (SRP001809)
271
363
+
Ser
GCT
[SRA]
>SRA1033777
SRR035088.351273
454 Sequencing (SRP001809)
377
469
+
Ser
GCT
[SRA]
Identical group No.8561 (6 seq.)
>WENV170598543
FUWD010039374
[FUWD] metagenome; unknown
621
529
-
Ser
GCT
[ENA]
¢þ
>WENV170616647
FUWD012895619
[FUWD] metagenome; unknown
330
422
+
Ser
GCT
[ENA]
¢þ
>SRA1031785
SRR035087.486254
454 Sequencing (SRP001808)
330
422
+
Ser
GCT
[SRA]
>SRA1033300
SRR035088.219543
454 Sequencing (SRP001809)
489
397
-
Ser
GCT
[SRA]
>SRA1034833
SRR035089.182052
454 Sequencing (SRP001810)
311
403
+
Ser
GCT
[SRA]
>SRA1049834
SRR035095.145163
454 Sequencing (SRP001816)
238
330
+
Ser
GCT
[SRA]
Identical group No.10833 (4 seq.)
>WENV170600994
FUWD010151907
[FUWD] metagenome; unknown
715
623
-
Ser
GCT
[ENA]
¢þ
>SRA1032865
SRR035088.118836
454 Sequencing (SRP001809)
384
292
-
Ser
GCT
[SRA]
>SRA1033014
SRR035088.152092
454 Sequencing (SRP001809)
506
414
-
Ser
GCT
[SRA]
>SRA1033714
SRR035088.334285
454 Sequencing (SRP001809)
143
235
+
Ser
GCT
[SRA]
Identical group No.10840 (3 seq.)
>WENV170607976
FUWD010876762
[FUWD] metagenome; unknown
134
226
+
Ser
GCT
[ENA]
¢þ
>SRA1032517
SRR035088.35468
454 Sequencing (SRP001809)
230
322
+
Ser
GCT
[SRA]
>SRA1039167
SRR035090.436099
454 Sequencing (SRP001811)
7
99
+
Ser
GCT
[SRA]
Identical group No.12258 (1 seq.)
>SRA1032508
SRR035088.30772
454 Sequencing (SRP001809)
407
499
+
Ser
GCT
[SRA]
Identical group No.12259 (1 seq.)
>SRA1033007
SRR035088.150723
454 Sequencing (SRP001809)
106
198
+
Ser
GCT
[SRA]
Identical group No.16620 (2 seq.)
>WENV170612802
FUWD012692890
[FUWD] metagenome; unknown
36
127
+
Ser
GCT
[ENA]
¢þ
>SRA1034134
SRR035088.504117
454 Sequencing (SRP001809)
68
159
+
Ser
GCT
[SRA]
Identical group No.27729 (1 seq.)
>SRA1033280
SRR035088.212861
454 Sequencing (SRP001809)
106
16
-
Ser
GCT
[SRA]
Identical group No.51201 (8 seq.)
>WENV170607687
FUWD010849024
[FUWD] metagenome; unknown
268
356
+
Ser
GCT
[ENA]
¢þ
>WENV170623248
FUWD013142891
[FUWD] metagenome; unknown
1030
1118
+
Ser
GCT
[ENA]
¢þ
>WENV170631505
FUWD013355087
[FUWD] metagenome; unknown
1030
1118
+
Ser
GCT
[ENA]
¢þ
>SRA1032850
SRR035088.114817
454 Sequencing (SRP001809)
161
249
+
Ser
GCT
[SRA]
>SRA1040859
SRR035091.160378
454 Sequencing (SRP001812)
322
410
+
Ser
GCT
[SRA]
>SRA1041193
SRR035091.211840
454 Sequencing (SRP001812)
293
205
-
Ser
GCT
[SRA]
>SRA1041739
SRR035091.285308
454 Sequencing (SRP001812)
343
431
+
Ser
GCT
[SRA]
>SRA1042056
SRR035091.332909
454 Sequencing (SRP001812)
205
293
+
Ser
GCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK