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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TCT
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180449 (24 seq.)
>W1710805087
LJZS01000012
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
81890
81814
-
Arg
TCT
[ENA]
¡û
>W1711220209
LXQG01000102
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
2268
2192
-
Arg
TCT
[ENA]
¡û
>W1711292969
LZYE01000197
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
26446
26370
-
Arg
TCT
[ENA]
¡û
>W1711293012
LZYF01000156
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
12474
12550
+
Arg
TCT
[ENA]
¡û
>W1711293055
LZYG01000157
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
12108
12184
+
Arg
TCT
[ENA]
¡û
>W1711293110
LZYH01000817
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
671
595
-
Arg
TCT
[ENA]
¡û
>WENV181233829
OFET01000129
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
24047
24123
+
Arg
TCT
[ENA]
¢þ
>WENV181406241
OGCG01000045
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
33963
34039
+
Arg
TCT
[ENA]
¢þ
>C181130811
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
1816611
1816687
+
Arg
TCT
-
¡û
>W141703422
JMMC01000007
Gammaproteobacteria
Halomonas sp. HL-48 [JMMC]
24068
24144
+
Arg
TCT
[ENA]
¡û
>W09134925
ACVD01000116
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
11521
11597
+
Arg
TCT
[ENA]
¡û
>W1910339593
FTLE01000003
Gammaproteobacteria
Halomonas massiliensis Marseille-P2426 [FTLE]
139025
139101
+
Arg
TCT
[ENA]
¡û
>W1911539891
ONZI01000004
Gammaproteobacteria
Kushneria phyllosphaerae EAod3 [ONZI]
70113
70189
+
Arg
TCT
[ENA]
¡û
>W1810200045
PNRG01000009
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27 [PNRG]
13322
13398
+
Arg
TCT
[ENA]
¡û
>W1810758273
QPIJ01000003
Gammaproteobacteria
Halomonas rituensis TQ8S [QPIJ]
109602
109526
-
Arg
TCT
[ENA]
¡û
>W1810786973
QRDJ01000006
Gammaproteobacteria
Kushneria indalinina DSM 14324 [QRDJ]
863873
863949
+
Arg
TCT
[ENA]
¡û
>C151007950
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
1698311
1698387
+
Arg
TCT
[Ensembl]
¡û
>W1510071611
CDGR01000150
Gammaproteobacteria
Halomonas salina B6 [CDGR]
24823
24747
-
Arg
TCT
[ENA]
¡û
>C11100494
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
1891530
1891606
+
Arg
TCT
[Ensembl]
¡û
>W1511319693
JPZL01000001
Gammaproteobacteria
Halomonas xinjiangensis TRM 0175 [JPZL]
260030
259954
-
Arg
TCT
[ENA]
¡û
>W1610668944
LJZS01000012
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
81890
81814
-
Arg
TCT
[ENA]
¡û
>W1611004681
LXQG01000102
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
2268
2192
-
Arg
TCT
[ENA]
¡û
>W1710519423
FNES01000008
Gammaproteobacteria
Halomonas gudaonensis [FNES]
111791
111715
-
Arg
TCT
[ENA]
¡û
>W1710544891
FOBC01000028
Gammaproteobacteria
Halomonas daqiaonensis [FOBC]
18793
18869
+
Arg
TCT
[ENA]
¡û
Identical group No.183917 (7 seq.)
>W1711168342
LVXZ01000074
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
16468
16544
+
Arg
TCT
[ENA]
¡û
>C08000435
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
944354
944281
-
Arg
TCT
[Ensembl]
¡û
>C09100413
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
770164
770088
-
Arg
TCT
[Ensembl]
¡û
>W1810679266
QKQP01000001
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
537352
537428
+
Arg
TCT
[ENA]
¡û
>W10127998
AEFB01001230
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
376
452
+
Arg
TCT
[ENA]
¡û
>W11135543
AEFB01001230
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
376
452
+
Arg
TCT
[ENA]
¡û
>W1610978257
LVXZ01000074
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
16468
16544
+
Arg
TCT
[ENA]
¡û
Identical group No.200333 (7 seq.)
>W1711169863
LVZL01000011
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
159629
159553
-
Arg
TCT
[ENA]
¡û
>W1711312173
MASQ01000091
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
2045
1969
-
Arg
TCT
[ENA]
¡û
>W141262894
CCCS020000003
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
34073
33997
-
Arg
TCT
[ENA]
¡û
>WENV170008637
AOMQ01010856
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
441
365
-
Arg
TCT
[ENA]
¢þ
>C11100753
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
1359657
1359581
-
Arg
TCT
[Ensembl]
¡û
>W11164267
AFJD01000005
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
125345
125421
+
Arg
TCT
[ENA]
¡û
>W1611057374
MASQ01000091
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
2045
1969
-
Arg
TCT
[ENA]
¡û
Identical group No.207968 (2 seq.)
>C191005124
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
2001402
2001326
-
Arg
TCT
-
¡û
>W1810257132
PQJK01000004
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
206763
206839
+
Arg
TCT
[ENA]
¡û
Identical group No.209781 (9 seq.)
>W1711190254
LWRY01000053
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
12573
12497
-
Arg
TCT
[ENA]
¡û
>W1711190329
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
23107
23183
+
Arg
TCT
[ENA]
¡û
>W1711190433
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
4831
4755
-
Arg
TCT
[ENA]
¡û
>W1711190561
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
4863
4787
-
Arg
TCT
[ENA]
¡û
>W1711190609
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
11000
10924
-
Arg
TCT
[ENA]
¡û
>W1711190670
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
18922
18998
+
Arg
TCT
[ENA]
¡û
>W1711293195
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
4849
4773
-
Arg
TCT
[ENA]
¡û
>W141206818
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
4760
4684
-
Arg
TCT
[ENA]
¡û
>W1710743671
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
25646
25722
+
Arg
TCT
[ENA]
¡û
Identical group No.209783 (19 seq.)
>W1710777639
LJBT01000013
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
219134
219210
+
Arg
TCT
[ENA]
¡û
>W1711010481
LQRJ01000055
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
25652
25576
-
Arg
TCT
[ENA]
¡û
>W1711190267
LWRY01000145
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
19250
19174
-
Arg
TCT
[ENA]
¡û
>W1711190352
LWRZ01000120
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
25012
25088
+
Arg
TCT
[ENA]
¡û
>W1711190408
LWSA01000095
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
31692
31616
-
Arg
TCT
[ENA]
¡û
>W1711190481
LWSB01000012
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
22209
22133
-
Arg
TCT
[ENA]
¡û
>W1711190585
LWSC01000019
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
26857
26933
+
Arg
TCT
[ENA]
¡û
>W1711190688
LWSD01000117
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
17515
17591
+
Arg
TCT
[ENA]
¡û
>W1711293211
LZYI01000244
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
15602
15678
+
Arg
TCT
[ENA]
¡û
>W1711585814
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
1982193
1982269
+
Arg
TCT
[ENA]
¡û
>W141206779
AZMO01000026
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
31623
31547
-
Arg
TCT
[ENA]
¡û
>W141695596
JMEB01000202
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
2305
2381
+
Arg
TCT
[ENA]
¡û
>W1910831832
MXAV01000013
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
80235
80159
-
Arg
TCT
[ENA]
¡û
>W11168554
AFOH01000132
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
2305
2381
+
Arg
TCT
[ENA]
¡û
>W1610627893
LIEB01000017
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
219108
219184
+
Arg
TCT
[ENA]
¡û
>W1610641825
LJBT01000013
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
219134
219210
+
Arg
TCT
[ENA]
¡û
>W1610859001
LQRJ01000055
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
25652
25576
-
Arg
TCT
[ENA]
¡û
>W1710743684
LGYM01000021
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
4444
4368
-
Arg
TCT
[ENA]
¡û
>W1710759020
LIEB01000017
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
219108
219184
+
Arg
TCT
[ENA]
¡û
Identical group No.209874 (7 seq.)
>W1710799189
LJUK01000117
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
1681
1757
+
Arg
TCT
[ENA]
¡û
>W1710799761
LJVB01000066
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
1636
1712
+
Arg
TCT
[ENA]
¡û
>W1711403000
MFSP01000032
Unclassified
Candidatus Muproteobacteria bacterium RBG_16_60_9 [MFSP]
19844
19768
-
Arg
TCT
[ENA]
¡û
>WENV180353583
OBLQ010879855
[OBLQ] soil metagenome; soil
243
167
-
Arg
TCT
[ENA]
¢þ
>W1610663146
LJUK01000117
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
1681
1757
+
Arg
TCT
[ENA]
¡û
>W1610663718
LJVB01000066
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
1636
1712
+
Arg
TCT
[ENA]
¡û
>W1730027550
MFSS01000108
Unclassified
Candidatus Muproteobacteria bacterium RBG_16_64_11 [MFSS]
5612
5688
+
Arg
TCT
[ENA]
¡û
Identical group No.211240 (26 seq.)
>W131171835
ARGN01000026
Betaproteobacteria
Chitiniphilus shinanonensis DSM 23277 [ARGN]
59719
59795
+
Arg
TCT
[ENA]
¡û
>W131231756
AUIS01000001
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
70568
70492
-
Arg
TCT
[ENA]
¡û
>WENV180042649
LQAF01016641
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
105
181
+
Arg
TCT
[ENA]
¢þ
>WENV180299045
OBJA01916548
[OBJA] soil metagenome; sediment, water from around vicinity
97
21
-
Arg
TCT
[ENA]
¢þ
>WENV181307467
OFIQ01007103
[OFIQ] marine metagenome; seawater
277
201
-
Arg
TCT
[ENA]
¢þ
>WENV170015487
AZIH01000462
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
854
778
-
Arg
TCT
[ENA]
¢þ
>WENV170112057
CEGC01005250
[CEGC] microbial mat metagenome; grass silage
3582
3506
-
Arg
TCT
[ENA]
¢þ
>WENV170112211
CEGD01022905
[CEGD] microbial mat metagenome; grass silage
969
1045
+
Arg
TCT
[ENA]
¢þ
>WENV170112250
CEGE01000271
[CEGE] microbial mat metagenome; grass silage
4512
4436
-
Arg
TCT
[ENA]
¢þ
>WENV170112510
CEGF01002034
[CEGF] microbial mat metagenome; grass silage
274
198
-
Arg
TCT
[ENA]
¢þ
>WENV170112518
CEGF01002037
[CEGF] microbial mat metagenome; grass silage
227
151
-
Arg
TCT
[ENA]
¢þ
>WENV170170504
CEOQ01006940
[CEOQ] marine metagenome genome assembly TARA_034_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1460
1384
-
Arg
TCT
[ENA]
¢þ
>WENV170463043
CEVD01106427
[CEVD] marine metagenome genome assembly TARA_123_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
235
159
-
Arg
TCT
[ENA]
¢þ
>WENV170656321
JTFO01010033
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1469
1545
+
Arg
TCT
[ENA]
¢þ
>WENV170803167
MDSW01025814
[MDSW] marine metagenome; seawater
3172
3248
+
Arg
TCT
[ENA]
¢þ
>WENV170916977
MDTE01185809
[MDTE] marine metagenome; seawater
28309
28233
-
Arg
TCT
[ENA]
¢þ
>W141713666
JMSZ01000021
Gammaproteobacteria
Nitrincola lacisaponensis [JMSZ]
208773
208849
+
Arg
TCT
[ENA]
¡û
>W141727047
JNCK01000001
Gammaproteobacteria
Halomonas zincidurans B6 [JNCK]
1781354
1781278
-
Arg
TCT
[ENA]
¡û
>W09102567
AAHZ01000023
Gammaproteobacteria
Chromohalobacter salexigens DSM 3043 [AAHZ]
176
252
+
Arg
TCT
[ENA]
¡û
>W1910840518
MZZK01000001
Gammaproteobacteria
Chromohalobacter salexigens ANJ 207 [MZZK]
2452830
2452754
-
Arg
TCT
[ENA]
¡û
>W1511334724
JQNW01000001
Gammaproteobacteria
Chromohalobacter israelensis 6768 [JQNW]
233348
233272
-
Arg
TCT
[ENA]
¡û
>W1511349195
JRLB01000099
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
18100
18176
+
Arg
TCT
[ENA]
¡û
>W11170405
AFPL01000026
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
51536
51612
+
Arg
TCT
[ENA]
¡û
>W1710533740
FNRJ01000002
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
57518
57442
-
Arg
TCT
[ENA]
¡û
>W1710578489
FPBP01000012
Gammaproteobacteria
Halomonas korlensis [FPBP]
42907
42831
-
Arg
TCT
[ENA]
¡û
>W1710596375
FTMN01000002
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
11764
11688
-
Arg
TCT
[ENA]
¡û
Identical group No.254252 (2 seq.)
>W10127973
AEFB01000308
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1035
959
-
Arg
TCT
[ENA]
¡û
>W11135518
AEFB01000308
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1035
959
-
Arg
TCT
[ENA]
¡û
Identical group No.289062 (1 seq.)
>C09100411
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1027220
1027145
-
Arg
TCT
[Ensembl]
¡û
Identical group No.393280 (1 seq.)
>W141738826
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
17133
17208
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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