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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CAC
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.512638 (5 seq.)
>W1711137566
LVBO01000290
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1927
1852
-
Val
CAC
[ENA]
¡û
>WENV180097749
MTBK01208941
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
94626
94701
+
Val
CAC
[ENA]
¢þ
>WENV180346100
OBLN01026168
[OBLN] sediment metagenome; sediment
348
273
-
Val
CAC
[ENA]
¢þ
>WENV170723509
LSQX01271537
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1695
1770
+
Val
CAC
[ENA]
¢þ
>W1610948686
LVBO01000290
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1927
1852
-
Val
CAC
[ENA]
¡û
Identical group No.516404 (10 seq.)
>WENV180731838
ODGW01019857
[ODGW] human metagenome; G_DNA_Supragingival plaque
585
660
+
Val
CAC
[ENA]
¢þ
>WENV180751572
ODHS01076030
[ODHS] human metagenome; G_DNA_Supragingival plaque
469
394
-
Val
CAC
[ENA]
¢þ
>WENV180798107
ODJB01260597
[ODJB] human metagenome; G_DNA_Supragingival plaque
165
240
+
Val
CAC
[ENA]
¢þ
>WENV180944160
ODUC01009283
[ODUC] human metagenome; G_DNA_Supragingival plaque
1519
1444
-
Val
CAC
[ENA]
¢þ
>WENV180981319
ODVE01015141
[ODVE] human metagenome; G_DNA_Supragingival plaque
1962
1887
-
Val
CAC
[ENA]
¢þ
>WENV181050399
ODYD01017188
[ODYD] human metagenome; G_DNA_Supragingival plaque
1857
1782
-
Val
CAC
[ENA]
¢þ
>WENV181076572
OEAP01007879
[OEAP] human metagenome; G_DNA_Supragingival plaque
2594
2669
+
Val
CAC
[ENA]
¢þ
>WENV181180266
OEJT01180940
[OEJT] human metagenome; G_DNA_Supragingival plaque
130
55
-
Val
CAC
[ENA]
¢þ
>WENV181182875
OEJV01063847
[OEJV] human metagenome; G_DNA_Supragingival plaque
266
341
+
Val
CAC
[ENA]
¢þ
>C161104057
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
213301
213226
-
Val
CAC
-
¡û
Identical group No.658539 (9 seq.)
>WENV181230209
OFEK01000419
[OFEK] activated sludge metagenome; Anaerobic digester
43807
43733
-
Val
CAC
[ENA]
¢þ
>WENV170678352
LDZT01014020
[LDZT] terrestrial metagenome; oil reservoir sample SB1
13383
13457
+
Val
CAC
[ENA]
¢þ
>WENV170717683
LSQX01045764
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7791
7717
-
Val
CAC
[ENA]
¢þ
>WENV170967346
MTKW01001001
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
81953
82027
+
Val
CAC
[ENA]
¢þ
>WENV170971378
MTKX01004540
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
18920
18846
-
Val
CAC
[ENA]
¢þ
>WENV170973931
MTKY01051890
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6208
6282
+
Val
CAC
[ENA]
¢þ
>WENV170978268
MTKZ01044974
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
7190
7264
+
Val
CAC
[ENA]
¢þ
>W1610613704
LGGE01000013
Synergistota
Synergistales bacterium 57_84 [LGGE]
13383
13457
+
Val
CAC
[ENA]
¡û
>W1710734857
LGGE01000013
Synergistota
Synergistales bacterium 57_84 [LGGE]
13383
13457
+
Val
CAC
[ENA]
¡û
Identical group No.658647 (10 seq.)
>WENV170563004
CZCB01008584
[CZCB] anaerobic digester metagenome; anaerobic digester
8040
7966
-
Val
CAC
[ENA]
¢þ
>WENV170676935
LDZS01003257
[LDZS] terrestrial metagenome; oil reservoir sample K3
6990
6916
-
Val
CAC
[ENA]
¢þ
>WENV170685151
LFRM01075334
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
23548
23474
-
Val
CAC
[ENA]
¢þ
>WENV170686334
LFRM01139342
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
7827
7753
-
Val
CAC
[ENA]
¢þ
>WENV170716725
LSQX01009735
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
10575
10501
-
Val
CAC
[ENA]
¢þ
>WENV170723088
LSQX01254763
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3007
3081
+
Val
CAC
[ENA]
¢þ
>WENV170968304
MTKW01007969
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
585
659
+
Val
CAC
[ENA]
¢þ
>WENV170969396
MTKW01027739
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
894
968
+
Val
CAC
[ENA]
¢þ
>W1610613303
LGFQ01000077
Synergistota
Synergistales bacterium 54_24 [LGFQ]
6990
6916
-
Val
CAC
[ENA]
¡û
>W1710734510
LGFQ01000077
Synergistota
Synergistales bacterium 54_24 [LGFQ]
6990
6916
-
Val
CAC
[ENA]
¡û
Identical group No.673446 (12 seq.)
>WENV170008121
AMZC01002271
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
524
450
-
Val
CAC
[ENA]
¢þ
>WENV170563689
CZCB01025451
[CZCB] anaerobic digester metagenome; anaerobic digester
5761
5687
-
Val
CAC
[ENA]
¢þ
>WENV170677182
LDZT01003517
[LDZT] terrestrial metagenome; oil reservoir sample SB1
79
153
+
Val
CAC
[ENA]
¢þ
>WENV170679040
LDZU01006776
[LDZU] terrestrial metagenome; oil reservoir sample SB2
79
153
+
Val
CAC
[ENA]
¢þ
>W09126635
ACJX01000211
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
308
382
+
Val
CAC
[ENA]
¡û
>C121008068
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
1276723
1276797
+
Val
CAC
[Ensembl]
¡û
>W1610613643
LGGB01000269
Synergistota
Synergistales bacterium 53_16 [LGGB]
79
153
+
Val
CAC
[ENA]
¡û
>W1610614487
LGHG01000027
Synergistota
Synergistales bacterium 54_9 [LGHG]
79
153
+
Val
CAC
[ENA]
¡û
>W1710530836
FNPD01000005
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
144973
145047
+
Val
CAC
[ENA]
¡û
>W1710594071
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
1857199
1857125
-
Val
CAC
[ENA]
¡û
>W1710734815
LGGB01000269
Synergistota
Synergistales bacterium 53_16 [LGGB]
79
153
+
Val
CAC
[ENA]
¡û
>W1710735468
LGHG01000027
Synergistota
Synergistales bacterium 54_9 [LGHG]
79
153
+
Val
CAC
[ENA]
¡û
Identical group No.674602 (19 seq.)
>W1711137629
LVBQ01000074
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
14171
14245
+
Val
CAC
[ENA]
¡û
>W1712039362
NFJQ01000002
Synergistota
Cloacibacillus sp. An23 [NFJQ]
174498
174424
-
Val
CAC
[ENA]
¡û
>WENV180963592
ODUN01269315
[ODUN] human metagenome; G_DNA_Stool
140
66
-
Val
CAC
[ENA]
¢þ
>WENV181865516
OGWU01035640
[OGWU] human gut metagenome; faeces
853
779
-
Val
CAC
[ENA]
¢þ
>WENV181908458
OGYB01000037
[OGYB] human gut metagenome; faeces
46447
46521
+
Val
CAC
[ENA]
¢þ
>WENV182172336
OHMY01002713
[OHMY] human gut metagenome; feces
942
1016
+
Val
CAC
[ENA]
¢þ
>WENV182364654
OICH01014090
[OICH] human gut metagenome; feces
1007
933
-
Val
CAC
[ENA]
¢þ
>WENV170690943
LFRM01372112
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
219
293
+
Val
CAC
[ENA]
¢þ
>WENV170691560
LFRM01402870
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2713
2639
-
Val
CAC
[ENA]
¢þ
>WENV170722777
LSQX01242759
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3059
3133
+
Val
CAC
[ENA]
¢þ
>W141452048
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
517745
517671
-
Val
CAC
[ENA]
¡û
>W141701223
JMKI01000047
Synergistota
Synergistes jonesii [JMKI]
18010
17936
-
Val
CAC
[ENA]
¡û
>W121000494
ACUH01000051
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
93163
93237
+
Val
CAC
[ENA]
¡û
>W1610948749
LVBQ01000074
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
14171
14245
+
Val
CAC
[ENA]
¡û
>W1710629264
JPZQ01000056
Synergistota
Synergistes jonesii [JPZQ]
17180
17106
-
Val
CAC
[ENA]
¡û
>W1710629305
JPZR01000046
Synergistota
Synergistes jonesii [JPZR]
17183
17109
-
Val
CAC
[ENA]
¡û
>W1710629347
JPZS01000048
Synergistota
Synergistes jonesii [JPZS]
17180
17106
-
Val
CAC
[ENA]
¡û
>W1710631833
JQEK01000023
Synergistota
Synergistes jonesii [JQEK]
17181
17107
-
Val
CAC
[ENA]
¡û
>W1710631898
JQEL01000049
Synergistota
Synergistes jonesii [JQEL]
17181
17107
-
Val
CAC
[ENA]
¡û
Identical group No.676118 (5 seq.)
>W1711629572
MPPC01000025
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
52405
52479
+
Val
CAC
[ENA]
¡û
>W141279012
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
735989
735915
-
Val
CAC
[ENA]
¡û
>WENV170657287
JTFO01117770
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
148
222
+
Val
CAC
[ENA]
¢þ
>WENV170717390
LSQX01034008
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
6084
6010
-
Val
CAC
[ENA]
¢þ
>C10100316
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
1482118
1482192
+
Val
CAC
[Ensembl]
¡û
Identical group No.706763 (9 seq.)
>W1711744483
MUHX01000002
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
107943
108017
+
Val
CAC
[ENA]
¡û
>WENV181438196
OGDH01023333
[OGDH] metagenome; Human gut stool
424
350
-
Val
CAC
[ENA]
¢þ
>W141146830
AWWC01000001
Synergistota
Jonquetella sp. BV3C21 [AWWC]
35838
35912
+
Val
CAC
[ENA]
¡û
>WENV181988942
OHAO01001567
[OHAO] human gut metagenome; faeces
10993
11067
+
Val
CAC
[ENA]
¢þ
>WENV183763838
PPYE01311113
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
54090
54016
-
Val
CAC
[ENA]
¢þ
>W09132987
ACOO02000031
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
83338
83264
-
Val
CAC
[ENA]
¡û
>W10113028
ADFP01000071
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
21761
21687
-
Val
CAC
[ENA]
¡û
>W11116255
ADFP01000071
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
21761
21687
-
Val
CAC
[ENA]
¡û
>W121017516
AGRU01000004
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
174197
174123
-
Val
CAC
[ENA]
¡û
Identical group No.706863 (1 seq.)
>W11138602
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
915900
915826
-
Val
CAC
[ENA]
¡û
Identical group No.716704 (4 seq.)
>C171050548
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1887551
1887625
+
Val
CAC
-
¡û
>WENV181910671
OGYC01029531
[OGYC] human gut metagenome; faeces
56
130
+
Val
CAC
[ENA]
¢þ
>WENV181915885
OGYF01023162
[OGYF] human gut metagenome; faeces
279
205
-
Val
CAC
[ENA]
¢þ
>WENV181989739
OHAO01038542
[OHAO] human gut metagenome; faeces
25
99
+
Val
CAC
[ENA]
¢þ
Identical group No.718822 (3 seq.)
>WENV170677177
LDZT01003462
[LDZT] terrestrial metagenome; oil reservoir sample SB1
985
911
-
Val
CAC
[ENA]
¢þ
>W1610613638
LGGB01000214
Synergistota
Synergistales bacterium 53_16 [LGGB]
985
911
-
Val
CAC
[ENA]
¡û
>W1710734810
LGGB01000214
Synergistota
Synergistales bacterium 53_16 [LGGB]
985
911
-
Val
CAC
[ENA]
¡û
Identical group No.721551 (2 seq.)
>W131157332
AQRZ01000053
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
29763
29837
+
Val
CAC
[ENA]
¡û
>WENV170007812
AMWB02159040
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
1073
1147
+
Val
CAC
[ENA]
¢þ
Identical group No.744210 (2 seq.)
>WENV170656543
JTFO01023742
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
306
232
-
Val
CAC
[ENA]
¢þ
>W09108888
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
172764
172838
+
Val
CAC
[ENA]
¡û
Identical group No.750735 (2 seq.)
>WENV170655541
JTFN01042650
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1265
1339
+
Val
CAC
[ENA]
¢þ
>W1710608710
FXBB01000021
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
42431
42357
-
Val
CAC
[ENA]
¡û
Identical group No.752745 (4 seq.)
>WENV181409286
OGCI01000066
[OGCI] hot springs metagenome; Hot spring water
79090
79164
+
Val
CAC
[ENA]
¢þ
>W09110125
ABUW01000002
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
176361
176287
-
Val
CAC
[ENA]
¡û
>C10112990
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1407689
1407763
+
Val
CAC
[Ensembl]
¡û
>W121031652
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
448152
448078
-
Val
CAC
[ENA]
¡û
Identical group No.762364 (2 seq.)
>W141278985
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
76660
76586
-
Val
CAC
[ENA]
¡û
>W141278986
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
67927
67853
-
Val
CAC
[ENA]
¡û
Identical group No.771938 (1 seq.)
>C121005691
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1436731
1436805
+
Val
CAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK