This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TGA
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52335 (3 seq.)
>WENV170676931
LDZS01003218
[LDZS] terrestrial metagenome; oil reservoir sample K3
979
1068
+
Ser
TGA
[ENA]
¢þ
>W1610613299
LGFQ01000038
Synergistota
Synergistales bacterium 54_24 [LGFQ]
979
1068
+
Ser
TGA
[ENA]
¡û
>W1710734506
LGFQ01000038
Synergistota
Synergistales bacterium 54_24 [LGFQ]
979
1068
+
Ser
TGA
[ENA]
¡û
Identical group No.89340 (18 seq.)
>C171050527
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
733184
733271
+
Ser
TGA
-
¡û
>WENV181908802
OGYB01000850
[OGYB] human gut metagenome; faeces
13810
13897
+
Ser
TGA
[ENA]
¢þ
>WENV181910756
OGYC01048389
[OGYC] human gut metagenome; faeces
342
429
+
Ser
TGA
[ENA]
¢þ
>WENV181914913
OGYF01001754
[OGYF] human gut metagenome; faeces
14284
14371
+
Ser
TGA
[ENA]
¢þ
>WENV182005909
OHBE01030230
[OHBE] human gut metagenome; faeces
165
252
+
Ser
TGA
[ENA]
¢þ
>WENV182030973
OHCS01000904
[OHCS] human gut metagenome; feces
10896
10809
-
Ser
TGA
[ENA]
¢þ
>WENV182143867
OHKV01039683
[OHKV] human gut metagenome; feces
589
502
-
Ser
TGA
[ENA]
¢þ
>WENV182180636
OHNO01004751
[OHNO] human gut metagenome; feces
2645
2558
-
Ser
TGA
[ENA]
¢þ
>WENV182212717
OHQG01004784
[OHQG] human gut metagenome; feces
1088
1175
+
Ser
TGA
[ENA]
¢þ
>WENV182215805
OHQM01002812
[OHQM] human gut metagenome; feces
3861
3774
-
Ser
TGA
[ENA]
¢þ
>WENV182221080
OHQS01044194
[OHQS] human gut metagenome; feces
460
547
+
Ser
TGA
[ENA]
¢þ
>WENV182260120
OHTI01029199
[OHTI] human gut metagenome; feces
179
266
+
Ser
TGA
[ENA]
¢þ
>WENV182291864
OHVZ01041089
[OHVZ] human gut metagenome; feces
506
419
-
Ser
TGA
[ENA]
¢þ
>WENV182537827
OIXH01020429
[OIXH] human gut metagenome; faeces
2321
2408
+
Ser
TGA
[ENA]
¢þ
>WENV183039565
OLGB01009475
[OLGB] human gut metagenome; faeces
3671
3584
-
Ser
TGA
[ENA]
¢þ
>WENV183489030
OMFZ01039240
[OMFZ] human gut metagenome; feces
162
75
-
Ser
TGA
[ENA]
¢þ
>W141452012
JFBR01000001
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
746693
746780
+
Ser
TGA
[ENA]
¡û
>W121000469
ACUH01000036
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
19280
19367
+
Ser
TGA
[ENA]
¡û
Identical group No.90859 (3 seq.)
>WENV170008129
AMZC01002560
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1556
1469
-
Ser
TGA
[ENA]
¢þ
>C121008088
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
232813
232726
-
Ser
TGA
[Ensembl]
¡û
>W1710594062
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
843111
843198
+
Ser
TGA
[ENA]
¡û
Identical group No.91045 (1 seq.)
>W1712039378
NFJQ01000009
Synergistota
Cloacibacillus sp. An23 [NFJQ]
64668
64755
+
Ser
TGA
[ENA]
¡û
Identical group No.91368 (3 seq.)
>W1711629573
MPPC01000025
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
144568
144655
+
Ser
TGA
[ENA]
¡û
>WENV170719904
LSQX01133135
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
82026
82113
+
Ser
TGA
[ENA]
¢þ
>C10100317
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
1564276
1564363
+
Ser
TGA
[Ensembl]
¡û
Identical group No.91466 (6 seq.)
>W141701225
JMKI01000048
Synergistota
Synergistes jonesii [JMKI]
9879
9966
+
Ser
TGA
[ENA]
¡û
>W1710629266
JPZQ01000057
Synergistota
Synergistes jonesii [JPZQ]
8177
8264
+
Ser
TGA
[ENA]
¡û
>W1710629310
JPZR01000048
Synergistota
Synergistes jonesii [JPZR]
8118
8205
+
Ser
TGA
[ENA]
¡û
>W1710629352
JPZS01000050
Synergistota
Synergistes jonesii [JPZS]
8153
8240
+
Ser
TGA
[ENA]
¡û
>W1710631837
JQEK01000025
Synergistota
Synergistes jonesii [JQEK]
8190
8277
+
Ser
TGA
[ENA]
¡û
>W1710631900
JQEL01000050
Synergistota
Synergistes jonesii [JQEL]
8153
8240
+
Ser
TGA
[ENA]
¡û
Identical group No.92848 (3 seq.)
>WENV170564026
CZCB01042725
[CZCB] anaerobic digester metagenome; anaerobic digester
2579
2492
-
Ser
TGA
[ENA]
¢þ
>W09126625
ACJX01000176
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
3067
3154
+
Ser
TGA
[ENA]
¡û
>W1710530848
FNPD01000014
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
20644
20731
+
Ser
TGA
[ENA]
¡û
Identical group No.92978 (3 seq.)
>WENV170679063
LDZU01006895
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1251
1338
+
Ser
TGA
[ENA]
¢þ
>W1610614510
LGHG01000146
Synergistota
Synergistales bacterium 54_9 [LGHG]
1251
1338
+
Ser
TGA
[ENA]
¡û
>W1710735491
LGHG01000146
Synergistota
Synergistales bacterium 54_9 [LGHG]
1251
1338
+
Ser
TGA
[ENA]
¡û
Identical group No.96328 (3 seq.)
>WENV180798291
ODJB01420342
[ODJB] human metagenome; G_DNA_Supragingival plaque
125
38
-
Ser
TGA
[ENA]
¢þ
>WENV180810384
ODJK01267797
[ODJK] human metagenome; G_DNA_Subgingival plaque
119
32
-
Ser
TGA
[ENA]
¢þ
>C161104054
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
550685
550598
-
Ser
TGA
-
¡û
Identical group No.97699 (1 seq.)
>W11138601
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
1085038
1084951
-
Ser
TGA
[ENA]
¡û
Identical group No.100298 (7 seq.)
>W1711137618
LVBQ01000034
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
13493
13406
-
Ser
TGA
[ENA]
¡û
>WENV170657112
JTFO01085659
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
381
468
+
Ser
TGA
[ENA]
¢þ
>WENV170658636
JTFP01169110
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
46
133
+
Ser
TGA
[ENA]
¢þ
>WENV170670642
LAHT01100927
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
351
438
+
Ser
TGA
[ENA]
¢þ
>WENV170687265
LFRM01186127
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1914
1827
-
Ser
TGA
[ENA]
¢þ
>WENV170720467
LSQX01153859
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
17298
17385
+
Ser
TGA
[ENA]
¢þ
>W1610948738
LVBQ01000034
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
13493
13406
-
Ser
TGA
[ENA]
¡û
Identical group No.105574 (4 seq.)
>WENV170655514
JTFN01040401
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
150
63
-
Ser
TGA
[ENA]
¢þ
>WENV170656272
JTFO01007895
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1181
1094
-
Ser
TGA
[ENA]
¢þ
>W09108889
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
310159
310246
+
Ser
TGA
[ENA]
¡û
>W1710608711
FXBB01000024
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
34689
34776
+
Ser
TGA
[ENA]
¡û
Identical group No.110793 (1 seq.)
>C121005712
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
555577
555490
-
Ser
TGA
[Ensembl]
¡û
Identical group No.110877 (1 seq.)
>W141279013
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
617928
617841
-
Ser
TGA
[ENA]
¡û
Identical group No.145400 (4 seq.)
>WENV181409162
OGCI01000019
[OGCI] hot springs metagenome; Hot spring water
185412
185498
+
Ser
TGA
[ENA]
¢þ
>W09110148
ABUW01000005
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
48179
48093
-
Ser
TGA
[ENA]
¡û
>C10113018
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
642502
642416
-
Ser
TGA
[Ensembl]
¡û
>W121031639
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
1226192
1226278
+
Ser
TGA
[ENA]
¡û
Identical group No.159529 (8 seq.)
>W1711744503
MUHX01000023
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
39624
39539
-
Ser
TGA
[ENA]
¡û
>WENV181618901
OGMC01027274
[OGMC] metagenome; Human gut stool
163
78
-
Ser
TGA
[ENA]
¢þ
>WENV181973277
OHAA01023152
[OHAA] human gut metagenome; faeces
880
795
-
Ser
TGA
[ENA]
¢þ
>WENV181989411
OHAO01008780
[OHAO] human gut metagenome; faeces
2531
2616
+
Ser
TGA
[ENA]
¢þ
>WENV183484416
OMFO01040446
[OMFO] human gut metagenome; feces
471
386
-
Ser
TGA
[ENA]
¢þ
>WENV183763826
PPYE01311108
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
31676
31591
-
Ser
TGA
[ENA]
¢þ
>W10113015
ADFP01000023
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
39179
39094
-
Ser
TGA
[ENA]
¡û
>W11116242
ADFP01000023
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
39179
39094
-
Ser
TGA
[ENA]
¡û
Identical group No.166166 (2 seq.)
>W1711137564
LVBO01000210
Synergistota
Synergistales bacterium Syner_01 [LVBO]
5492
5407
-
Ser
TGA
[ENA]
¡û
>W1610948684
LVBO01000210
Synergistota
Synergistales bacterium Syner_01 [LVBO]
5492
5407
-
Ser
TGA
[ENA]
¡û
Identical group No.166474 (3 seq.)
>W141146858
AWWC01000018
Synergistota
Jonquetella sp. BV3C21 [AWWC]
98586
98501
-
Ser
TGA
[ENA]
¡û
>W09132960
ACOO02000017
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
98974
98889
-
Ser
TGA
[ENA]
¡û
>W121017506
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
103595
103510
-
Ser
TGA
[ENA]
¡û
Identical group No.171970 (3 seq.)
>W1711137597
LVBP01000233
Synergistota
Synergistales bacterium Syner_02 [LVBP]
1761
1676
-
Ser
TGA
[ENA]
¡û
>WENV170720984
LSQX01174082
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1513
1598
+
Ser
TGA
[ENA]
¢þ
>W1610948717
LVBP01000233
Synergistota
Synergistales bacterium Syner_02 [LVBP]
1761
1676
-
Ser
TGA
[ENA]
¡û
Identical group No.176618 (1 seq.)
>W141278984
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
95106
95021
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK