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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = GCT
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44725 (1 seq.)
>CL171300031
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
394363
392653
-
Ser
GCT
-
¡û
Identical group No.100651 (1 seq.)
>A171000308
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1587413
1587326
-
Ser
GCT
-
¡û
Identical group No.113052 (8 seq.)
>A171003702
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1480441
1480525
+
Ser
GCT
-
¡û
>WENV180620105
OCQB01028971
[OCQB] human gut metagenome; human gut
557
473
-
Ser
GCT
[ENA]
¢þ
>WENV181035836
ODXP01000015
[ODXP] human metagenome; G_DNA_Stool
135249
135165
-
Ser
GCT
[ENA]
¢þ
>WENV182031532
OHCS01035960
[OHCS] human gut metagenome; feces
672
588
-
Ser
GCT
[ENA]
¢þ
>WENV182194012
OHPB01062552
[OHPB] human gut metagenome; feces
165
249
+
Ser
GCT
[ENA]
¢þ
>WENV182535780
OIXH01000001
[OIXH] human gut metagenome; faeces
318542
318626
+
Ser
GCT
[ENA]
¢þ
>WENV183038991
OLGB01002328
[OLGB] human gut metagenome; faeces
11333
11249
-
Ser
GCT
[ENA]
¢þ
>WENV183040425
OLGD01000006
[OLGD] human gut metagenome; faeces
318541
318625
+
Ser
GCT
[ENA]
¢þ
Identical group No.124678 (3 seq.)
>A171006522
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1562465
1562379
-
Ser
GCT
-
¡û
>WENV180674515
OCVV011352227
[OCVV] gut metagenome; gut
1975
2061
+
Ser
GCT
[ENA]
¢þ
>WENV180674516
OCVV011352227
[OCVV] gut metagenome; gut
1975
2061
+
Ser
GCT
[ENA]
¢þ
Identical group No.151262 (1 seq.)
>CL171300030
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
394362
394181
-
Ser
GCT
-
¡û
Identical group No.152465 (1 seq.)
>A171005732
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1072890
1072974
+
Ser
GCT
-
¡û
Identical group No.154097 (9 seq.)
>A171003545
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
282964
282879
-
Ser
GCT
-
¡û
>WENV180326471
OBKS01081571
[OBKS] human gut metagenome; human gut
546
461
-
Ser
GCT
[ENA]
¢þ
>WENV181606997
OGLM01002525
[OGLM] metagenome; Human gut stool
1906
1821
-
Ser
GCT
[ENA]
¢þ
>WENV181655738
OGOB01000866
[OGOB] metagenome; Human gut stool
1827
1742
-
Ser
GCT
[ENA]
¢þ
>WENV181772707
OGRD01012816
[OGRD] human gut metagenome; faeces
77
162
+
Ser
GCT
[ENA]
¢þ
>WENV182525532
OIWT01002798
[OIWT] human gut metagenome; faeces
14320
14405
+
Ser
GCT
[ENA]
¢þ
>WENV183045695
OLGE01020912
[OLGE] human gut metagenome; faeces
1279
1364
+
Ser
GCT
[ENA]
¢þ
>WENV183517666
OMNP01007241
[OMNP] human gut metagenome; feces
2436
2521
+
Ser
GCT
[ENA]
¢þ
>W1610011051
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
26409
26494
+
Ser
GCT
[ENA]
¡û
Identical group No.158039 (9 seq.)
>A171003617
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
335106
335190
+
Ser
GCT
-
¡û
>A171006621
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1222986
1223070
+
Ser
GCT
-
¡û
>W141000063
AADL01001315
Unclassified
mine drainage metagenome Group III [AADL]
433
517
+
Ser
GCT
[ENA]
¡û
>W141000088
AADL01001522
Unclassified
mine drainage metagenome Group III [AADL]
39559
39475
-
Ser
GCT
[ENA]
¡û
>W141000107
AADL01001635
Unclassified
mine drainage metagenome Group III [AADL]
14443
14527
+
Ser
GCT
[ENA]
¡û
>W1610000056
AABC05000008
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
98598
98682
+
Ser
GCT
[ENA]
¡û
>WENV077071
AADL01001315
Acid Mine Drainage microbial communities from Richmond mine
433
520
+
Ser
GCT
[ENA]
>WENV077096
AADL01001522
Acid Mine Drainage microbial communities from Richmond mine
39559
39472
-
Ser
GCT
[ENA]
>WENV077115
AADL01001635
Acid Mine Drainage microbial communities from Richmond mine
14443
14530
+
Ser
GCT
[ENA]
Identical group No.158041 (5 seq.)
>A171007738
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1065003
1065088
+
Ser
GCT
-
¡û
>A171007775
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1068436
1068521
+
Ser
GCT
-
¡û
>W141000126
AADL01001777
Unclassified
mine drainage metagenome Group III [AADL]
527
612
+
Ser
GCT
[ENA]
¡û
>ENV09002269
ACXJ01012553
Mine drainage metagenome Contig1
534
619
+
Ser
GCT
[ENA]
¡û
>WENV077134
AADL01001777
Acid Mine Drainage microbial communities from Richmond mine
527
614
+
Ser
GCT
[ENA]
Identical group No.167865 (1 seq.)
>A171002559
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
333829
333744
-
Ser
GCT
-
¡û
Identical group No.168026 (2 seq.)
>At1774
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
1159710
1159628
-
Ser
GCT
[Ensembl]
¡û
>W1910469099
FWYE01000003
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
188715
188632
-
Ser
GCT
[ENA]
¡û
Identical group No.193835 (4 seq.)
>A171001353
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
200169
200251
+
Ser
GCT
-
¡û
>W1610000642
ABSD01000006
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
118727
118811
+
Ser
GCT
[ENA]
¡û
>W1610000669
ABSD01000036
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
9343
9259
-
Ser
GCT
[ENA]
¡û
>W1610001685
ADFG01000002
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
54665
54749
+
Ser
GCT
[ENA]
¡û
Identical group No.196803 (1 seq.)
>At2047
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1131366
1131285
-
Ser
GCT
[Ensembl]
¡û
Identical group No.198833 (1 seq.)
>A171002888
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
763829
763747
-
Ser
GCT
-
¡û
Identical group No.204520 (2 seq.)
>At1998
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
996371
996290
-
Ser
GCT
[Ensembl]
¡û
>W1911681174
QJSM01000026
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
15990
15909
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK