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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV183717474
PDWJ01000965
399246
Bacillota
GCC
Gly
>WENV183717473
PDWJ01000965
140812
Bacillota
TAG
Leu
>WENV183717509
PDWJ01001031
448425
Bacillota
TTC
Glu
>WENV183717549
PDWJ01001108
227487
Bacillota
TGG
Pro
>WENV183717632
PDWJ01001256
399246
Bacillota
GCC
Gly
>WENV183717836
PDWJ01001725
399246
Bacillota
GCC
Gly
>WENV183717889
PDWJ01001878
399246
Bacillota
GCC
Gly
>WENV183717890
PDWJ01001878
480469
Bacillota
GCA
Cys
>WENV183717921
PDWJ01001980
407840
Bacillota
TTC
Glu
>WENV183718076
PDWJ01002303
280643
Bacillota
TTT
Lys
>WENV183718120
PDWJ01002474
280643
Bacillota
TTT
Lys
>WENV183718309
PDWJ01003304
280643
Bacillota
TTT
Lys
>WENV183718304
PDWJ01003304
227487
Bacillota
TGG
Pro
>WENV183718478
PDWJ01004333
227487
Bacillota
TGG
Pro
>WENV183718686
PDWJ01005889
430720
Bacillota
TTC
Glu
>WENV183718699
PDWJ01005943
448425
Bacillota
TTC
Glu
>WENV183718726
PDWJ01006122
280643
Bacillota
TTT
Lys
>WENV183718736
PDWJ01006251
227487
Bacillota
TGG
Pro
>WENV183718775
PDWJ01006522
482441
Bacillota
TCC
Gly
>WENV183718802
PDWJ01006630
280643
Bacillota
TTT
Lys
>WENV183718884
PDWJ01007430
227487
Bacillota
TGG
Pro
>WENV183718965
PDWJ01008161
280643
Bacillota
TTT
Lys
>WENV183719112
PDWJ01009838
227487
Bacillota
TGG
Pro
>WENV183719122
PDWJ01009919
227487
Bacillota
TGG
Pro
>WENV183719217
PDWJ01010849
448425
Bacillota
TTC
Glu
>WENV183719240
PDWJ01010992
399246
Bacillota
GCC
Gly
>WENV183719321
PDWJ01012328
430720
Bacillota
TTC
Glu
>WENV183719427
PDWJ01014008
399246
Bacillota
GCC
Gly
>WENV183719428
PDWJ01014008
280643
Bacillota
TTT
Lys
>WENV183719534
PDWJ01015767
227487
Bacillota
TGG
Pro
>WENV183719659
PDWJ01018014
480469
Bacillota
GCA
Cys
>WENV183719750
PDWJ01019758
227487
Bacillota
TGG
Pro
>WENV183719800
PDWJ01020617
448425
Bacillota
TTC
Glu
>WENV183719803
PDWJ01020617
175915
Bacillota
GTC
Asp
>WENV183719869
PDWJ01021861
482441
Bacillota
TCC
Gly
>WENV183720029
PDWJ01025128
227487
Bacillota
TGG
Pro
>WENV183720092
PDWJ01026180
327695
Bacillota
GAA
Phe
>WENV183720088
PDWJ01026180
53592
Bacillota
TGA
Ser
>WENV183720404
PDWJ01033582
280643
Bacillota
TTT
Lys
>WENV183720590
PDWJ01038518
21311
Bacillota
GCT
Ser
>WENV183720607
PDWJ01039205
187364
Bacillota
CAT
Met
>WENV183720678
PDWJ01041383
227487
Bacillota
TGG
Pro
>WENV183720793
PDWJ01045491
480469
Bacillota
GCA
Cys
>WENV183720947
PDWJ01050270
399246
Bacillota
GCC
Gly
>WENV183720948
PDWJ01050270
280643
Bacillota
TTT
Lys
>WENV183720972
PDWJ01050979
480469
Bacillota
GCA
Cys
>WENV183721020
PDWJ01052485
480469
Bacillota
GCA
Cys
>WENV183721332
PDWJ01064899
227487
Bacillota
TGG
Pro
>WENV183721372
PDWJ01066168
314834
Bacillota
TGC
Ala
>WENV183721413
PDWJ01068122
402928
Bacillota
GCC
Gly
>WENV183721512
PDWJ01073250
399246
Bacillota
GCC
Gly
>WENV183721513
PDWJ01073250
280643
Bacillota
TTT
Lys
>WENV183721521
PDWJ01073624
448425
Bacillota
TTC
Glu
>WENV183721611
PDWJ01077373
120213
Bacillota
GTA
Tyr
>WENV183721917
PDWJ01094580
46655
Bacillota
TGA
Ser
>WENV183722077
PDWJ01104429
399246
Bacillota
GCC
Gly
>WENV183722149
PDWJ01108233
141617
Bacillota
TAG
Leu
>WENV183722192
PDWJ01111335
444984
Bacillota
GCC
Gly
>WENV183722273
PDWJ01115883
25413
Bacillota
GCT
Ser
>WENV183722265
PDWJ01115883
227487
Bacillota
TGG
Pro
>WENV183722448
PDWJ01130082
314834
Bacillota
TGC
Ala
>WENV183722471
PDWJ01131654
399246
Bacillota
GCC
Gly
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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