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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
28 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1034766
SRR035089.169153
453583
Chlorobiota
CGC
Ala
>SRA1034186
SRR035089.17134
453379
Chlorobiota
TGT
Thr
>SRA1034193
SRR035089.18931
271198
Chlorobiota
CAT
Met
>SRA1034936
SRR035089.202694
272557
Chlorobiota
GGG
Pro
>SRA1035182
SRR035089.255324
452251
Chlorobiota
CAT
Met
>SRA1035265
SRR035089.270799
453379
Chlorobiota
TGT
Thr
>SRA1035402
SRR035089.298918
272734
Chlorobiota
CAT
Met
>SRA1035403
SRR035089.298918
453695
Chlorobiota
CCC
Gly
>SRA1035601
SRR035089.338605
453583
Chlorobiota
CGC
Ala
>SRA1035619
SRR035089.341578
453381
Chlorobiota
CCA
Trp
>SRA1035635
SRR035089.344210
272771
Chlorobiota
GAT
Ile
>SRA1035640
SRR035089.347245
272771
Chlorobiota
GAT
Ile
>SRA1035693
SRR035089.355870
272483
Chlorobiota
GTG
His
>SRA1035691
SRR035089.355870
453483
Chlorobiota
TGG
Pro
>SRA1035694
SRR035089.356123
272734
Chlorobiota
CAT
Met
>SRA1035695
SRR035089.356123
453695
Chlorobiota
CCC
Gly
>SRA1035723
SRR035089.362304
453583
Chlorobiota
CGC
Ala
>SRA1035837
SRR035089.385362
453583
Chlorobiota
CGC
Ala
>SRA1035944
SRR035089.411123
453381
Chlorobiota
CCA
Trp
>SRA1036134
SRR035089.452115
272557
Chlorobiota
GGG
Pro
>SRA1036340
SRR035089.498190
453380
Chlorobiota
GGT
Thr
>SRA1036338
SRR035089.498190
453379
Chlorobiota
TGT
Thr
>SRA1034314
SRR035089.54866
453483
Chlorobiota
TGG
Pro
>SRA1036578
SRR035089.553928
453583
Chlorobiota
CGC
Ala
>SRA1036591
SRR035089.556216
453380
Chlorobiota
GGT
Thr
>SRA1036592
SRR035089.556216
453381
Chlorobiota
CCA
Trp
>SRA1036695
SRR035089.586264
272771
Chlorobiota
GAT
Ile
>SRA1034439
SRR035089.96474
272557
Chlorobiota
GGG
Pro
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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